Last updated: 2022-04-23
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Knit directory: cTWAS_analysis/
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Supplementary_Table_20_Prioritised_Genes <- read_excel("data/Supplementary Table 20 - Prioritised Genes.xlsx",
sheet = "ST20 all criteria")
SMR_genes <- Supplementary_Table_20_Prioritised_Genes[,c("Symbol.ID","SMRmap","SMRsingleGene","HI.C.SMR")]
SMR_genes["index"] <- (SMR_genes$SMRmap==1) | (SMR_genes$SMRsingleGene==1) | (SMR_genes$HI.C.SMR==1)
SMR_genes <- SMR_genes[SMR_genes$index==1,]$Symbol.ID
sessionInfo()R version 4.1.0 (2021-05-18)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Scientific Linux 7.4 (Nitrogen)
Matrix products: default
BLAS/LAPACK: /software/openblas-0.3.13-el7-x86_64/lib/libopenblas_haswellp-r0.3.13.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] reactable_0.2.3 readxl_1.3.1 workflowr_1.6.2
loaded via a namespace (and not attached):
[1] Rcpp_1.0.7 pillar_1.6.1 compiler_4.1.0 bslib_0.2.5.1
[5] cellranger_1.1.0 later_1.2.0 jquerylib_0.1.4 git2r_0.28.0
[9] highr_0.9 tools_4.1.0 digest_0.6.27 jsonlite_1.7.2
[13] evaluate_0.14 lifecycle_1.0.0 tibble_3.1.2 pkgconfig_2.0.3
[17] rlang_0.4.11 crosstalk_1.1.1 yaml_2.2.1 xfun_0.24
[21] reactR_0.4.4 stringr_1.4.0 knitr_1.33 htmlwidgets_1.5.3
[25] fs_1.5.0 vctrs_0.3.8 sass_0.4.0 rprojroot_2.0.2
[29] glue_1.4.2 data.table_1.14.0 R6_2.5.0 fansi_0.5.0
[33] rmarkdown_2.9 magrittr_2.0.1 whisker_0.4 promises_1.2.0.1
[37] ellipsis_0.3.2 htmltools_0.5.1.1 httpuv_1.6.1 utf8_1.2.1
[41] stringi_1.6.2 crayon_1.4.1