<<<<<<< HEAD Last updated: 2023-12-13 ======= Last updated: 2023-12-07 >>>>>>> e4f99a1f3e7312d4460b937a01900706a3cb792f

Checks: 2 0

Knit directory: multigroup_ctwas_analysis/

This reproducible R Markdown analysis was created with workflowr (version 1.7.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

<<<<<<< HEAD Repository version: 9a49925

>>>>>>> e4f99a1f3e7312d4460b937a01900706a3cb792f

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

<<<<<<< HEAD The results in this page were generated with repository version 9a49925. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files. ======= The results in this page were generated with repository version b98fcd9. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files. >>>>>>> e4f99a1f3e7312d4460b937a01900706a3cb792f

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


<<<<<<< HEAD
Untracked files:
    Untracked:  analysis/region_merge_test.Rmd
=======
Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
>>>>>>> e4f99a1f3e7312d4460b937a01900706a3cb792f

Unstaged changes:
    Modified:   analysis/detect_LD_mismatch_gwas_UKBBref_susie_rss.Rmd

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
Rmd <<<<<<< HEAD ======= b98fcd9 kevinlkx 2023-12-07 wflow_publish("analysis/index.Rmd")
Rmd >>>>>>> e4f99a1f3e7312d4460b937a01900706a3cb792f 9a49925 sq-96 2023-12-05 update
html 9a49925 sq-96 2023-12-05 update
html d2ccdfd sq-96 2023-12-03 update
html 769171e sq-96 2023-12-03 update
Rmd 90d301d XSun 2023-12-03 update
html 90d301d XSun 2023-12-03 update
html 93d4d29 sq-96 2023-12-03 update
Rmd a69235e sq-96 2023-12-03 update
html a69235e sq-96 2023-12-03 update
html 11b528b sq-96 2023-12-03 update
html 7837083 sq-96 2023-12-03 update
Rmd bd6ce49 sq-96 2023-12-03 update
html bd6ce49 sq-96 2023-12-03 update
Rmd e1fd609 sq-96 2023-12-03 update
html e1fd609 sq-96 2023-12-03 update
html 43b79d7 kevinlkx 2023-11-29 Build site.
Rmd 4672c9e kevinlkx 2023-11-29 added link with DENTIST result
Rmd 602e846 sq-96 2023-11-20 update histone weights
html 602e846 sq-96 2023-11-20 update histone weights
Rmd 23b5515 sq-96 2023-11-20 update apa results
html 23b5515 sq-96 2023-11-20 update apa results
html 9b57773 kevinlkx 2023-11-14 Build site.
Rmd c062fd9 kevinlkx 2023-11-14 wflow_publish("analysis/index.Rmd")
Rmd a406e50 XSun 2023-11-13 update
html a406e50 XSun 2023-11-13 update
Rmd ddf474a Xiaotong Sun 2023-11-13 update
Rmd 909f2ad XSun 2023-11-13 update
html 909f2ad XSun 2023-11-13 update
html f9cd866 sq-96 2023-11-12 Build site.
Rmd 66430f6 sq-96 2023-11-12 Start workflowr project.

Data

link

LD mismatch diagnosis

Multi-tissue

Single QTL analysis

Simulation results

Region Merge