**Last updated:** 2019-03-31

**Checks:** 2 0

**Knit directory:** `fiveMinuteStats/analysis/`

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```
Ignored files:
Ignored: .Rhistory
Ignored: .Rproj.user/
Ignored: analysis/.Rhistory
Ignored: analysis/figure/
Untracked files:
Untracked: _workflowr.yml
Untracked: analysis/CI.Rmd
Untracked: analysis/gibbs_structure.Rmd
Untracked: analysis/libs/
Untracked: analysis/results.Rmd
Untracked: analysis/shiny/tester/
Untracked: docs/MH_intro_files/
Untracked: docs/citations.bib
Untracked: docs/hmm_files/
Untracked: docs/libs/
Untracked: docs/shiny/tester/
Unstaged changes:
Modified: analysis/BF_and_pvalue.Rmd
Modified: analysis/CI_conditional_coverage.Rmd
Modified: analysis/Importance_sampling.Rmd
Modified: analysis/LR_and_BF.Rmd
Modified: analysis/LR_error.Rmd
Modified: analysis/MH-examples1.Rmd
Modified: analysis/MH_intro.Rmd
Modified: analysis/_site.yml
Modified: analysis/approx_wright_fisher_model.Rmd
Modified: analysis/asymptotic_normality_mle.Rmd
Modified: analysis/bayes_beta_binomial.Rmd
Modified: analysis/bayes_conjugate.Rmd
Modified: analysis/bayes_conjugate_normal_mean.Rmd
Modified: analysis/bayes_independent.Rmd
Modified: analysis/bayes_multiclass.Rmd
Modified: analysis/bernoulli_poisson_process.Rmd
Modified: analysis/beta.Rmd
Deleted: analysis/chunks.R
Modified: analysis/citations.bib
Modified: analysis/decision_theory_bayes_rule.Rmd
Modified: analysis/decisions_costs_intro.Rmd
Modified: analysis/dirichlet.Rmd
Modified: analysis/ebnm_normal.Rmd
Modified: analysis/gibbs1.Rmd
Modified: analysis/gibbs2.Rmd
Modified: analysis/gibbs_structure_simple.Rmd
Modified: analysis/hmm.Rmd
Modified: analysis/index.Rmd
Modified: analysis/integral.Rmd
Modified: analysis/intro_to_em.Rmd
Modified: analysis/intro_to_mixture_models.Rmd
Modified: analysis/inverse_transform_sampling.Rmd
Modified: analysis/is_simple.Rmd
Modified: analysis/likelihood_combining_independent.Rmd
Modified: analysis/likelihood_do_dont.Rmd
Modified: analysis/likelihood_function.Rmd
Modified: analysis/likelihood_ratio_simple_continuous_data.Rmd
Modified: analysis/likelihood_ratio_simple_models.Rmd
Modified: analysis/loglikelihood.Rmd
Modified: analysis/markov_chains_discrete_intro.Rmd
Modified: analysis/markov_chains_discrete_stationary_dist.Rmd
Modified: analysis/markov_chains_time_reversibility.Rmd
Modified: analysis/model.Rmd
Modified: analysis/mvnorm.Rmd
Modified: analysis/normal_markov_chain.Rmd
Modified: analysis/poisson_process_time_dependent_thinning.Rmd
Modified: analysis/pvalue_difficult_calibrate_example.Rmd
Modified: analysis/shiny_binomial_example.Rmd
Modified: analysis/shiny_normal_example.Rmd
Modified: analysis/simple_nonconjugate.Rmd
Modified: analysis/simulating_discrete_chains_1.Rmd
Modified: analysis/simulating_discrete_chains_2.Rmd
Modified: analysis/stationary_distribution.Rmd
Modified: analysis/summarize_interpret_posterior.Rmd
Modified: analysis/wilks.Rmd
Modified: analysis/wright_fisher_model.Rmd
Modified: fiveMinuteStats.Rproj
```

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File | Version | Author | Date | Message |
---|---|---|---|---|

html | 34bcc51 | John Blischak | 2017-03-06 | Build site. |

Rmd | 2aa70fe | John Blischak | 2017-03-06 | Manually udpate some Rmd files. |

html | fb0f6e3 | stephens999 | 2017-03-03 | Merge pull request #33 from mdavy86/f/review |

html | 0713277 | stephens999 | 2017-03-03 | Merge pull request #31 from mdavy86/f/review |

html | c3b365a | John Blischak | 2017-01-02 | Build site. |

Rmd | 5ec12c7 | John Blischak | 2017-01-02 | Use session-info chunk. |

Rmd | 90df5f8 | stephens999 | 2016-01-05 | tidy up material related to ashlar by removing much of it |

Rmd | 1b891a0 | jhsiao999 | 2015-12-12 | first commit |

Matthew Stephens is a Professor in Statistics and Human Genetics at the University of Chicago.

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