Last updated: 2019-11-20

Checks: 2 0

Knit directory: finemap-uk-biobank/

This reproducible R Markdown analysis was created with workflowr (version 1.5.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

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Repository version: 1aad447

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Ignored files:
    Ignored:    data/height.ACAN.XtX.Xty.rds
    Ignored:    data/height.ADAMTS10.XtX.Xty.rds
    Ignored:    data/height.ADAMTS17.XtX.Xty.rds
    Ignored:    data/height.ADAMTSL3.XtX.Xty.rds
    Ignored:    data/height.CABLES1.XtX.Xty.rds
    Ignored:    data/height.CDK6.XtX.Xty.rds
    Ignored:    data/height.DLEU1.XtX.Xty.rds
    Ignored:    data/height.EFEMP1.XtX.Xty.rds
    Ignored:    data/height.GDF5.XtX.Xty.rds
    Ignored:    data/height.GNA12.XtX.Xty.rds
    Ignored:    data/height.HHIP.XtX.Xty.rds
    Ignored:    data/height.HMGA2.XtX.Xty.rds
    Ignored:    data/height.KDM2A.XtX.Xty.rds
    Ignored:    data/height.LCORL.XtX.Xty.rds
    Ignored:    data/height.MTMR11.XtX.Xty.rds
    Ignored:    data/height.UQCC1.XtX.Xty.rds
    Ignored:    data/height.ZBTB38.XtX.Xty.rds
    Ignored:    data/height.ZBTB38.removeCS1.XtX.Xty.rds
    Ignored:    data/height.ZBTB38.removeCS2.XtX.Xty.rds
    Ignored:    output/height.CABLES1.removeCS1.XtX.Xty.rds
    Ignored:    output/height.CABLES1.removeCS2.XtX.Xty.rds
    Ignored:    output/height.GDF5.removeCS1.XtX.Xty.rds
    Ignored:    output/height.ZBTB38.removeCS1.XtX.Xty.rds
    Ignored:    output/height.ZBTB38.removeCS2.XtX.Xty.rds

Untracked files:
    Untracked:  output/height.CABLES1.simulation1000.rds
    Untracked:  output/height.ZBTB38.plink2.height.glm.linear
    Untracked:  output/height.ZBTB38.simulation1000.rds
    Untracked:  output/height.ZBTB38.susie.model.rds

Unstaged changes:
    Modified:   .gitignore
    Modified:   analysis/_site.yml
    Modified:   scripts/plots.R
    Modified:   scripts/prepare.region.sh
    Modified:   scripts/prepare.susieinput.R

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the R Markdown and HTML files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view them.

File Version Author Date Message
Rmd 1aad447 zouyuxin 2019-11-20 wflow_publish(“analysis/index.Rmd”)
html 96570f9 zouyuxin 2019-11-19 Build site.
Rmd a801f44 zouyuxin 2019-11-14 Start workflowr project.

This repository contains code and results for fine-mapping on UK Biobank phenotypes.