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Last updated: 2021-03-09

Checks: 2 0

Knit directory: mmbr-rss-dsc/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: d0376fa

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version d0376fa. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    data/.DS_Store
    Ignored:    output/.DS_Store

Untracked files:
    Untracked:  data/ENSG00000140265.12.Multi_Tissues.rds
    Untracked:  data/FastQTLSumStats.mash.FL_PC3.rds
    Untracked:  data/mmbr_ukb_simulation/
    Untracked:  data/mmbr_ukb_simulation_problem/
    Untracked:  data/ukb_rss_naive_lfsr_problem.rds
    Untracked:  data/ukb_rss_naive_pip_problem.rds
    Untracked:  output/GTExprofile_res.rds
    Untracked:  output/GTExprofile_resL1.rds
    Untracked:  output/GTExprofile_resL1_elbo.rds
    Untracked:  output/GTExprofile_resL3.rds
    Untracked:  output/GTExprofile_resL3_elbo.rds
    Untracked:  output/GTExprofile_res_elbo.rds
    Untracked:  output/GTExprofile_resapprox.rds
    Untracked:  output/GTExprofile_resapproxL1.rds
    Untracked:  output/GTExprofile_resapproxL1_elbo.rds
    Untracked:  output/GTExprofile_resapproxL3.rds
    Untracked:  output/GTExprofile_resapproxL3_elbo.rds
    Untracked:  output/GTExprofile_resapprox_elbo.rds
    Untracked:  output/GTExprofile_resapproxdiag.rds
    Untracked:  output/GTExprofile_resapproxdiagL1.rds
    Untracked:  output/GTExprofile_resapproxdiagL1_elbo.rds
    Untracked:  output/GTExprofile_resapproxdiagL3.rds
    Untracked:  output/GTExprofile_resapproxdiagL3_elbo.rds
    Untracked:  output/GTExprofile_resapproxdiag_elbo.rds
    Untracked:  output/GTExprofile_resdiag.rds
    Untracked:  output/mmbr_gtex_res.Rprof
    Untracked:  output/mmbr_gtex_res_approx.Rprof
    Untracked:  output/mmbr_gtex_res_approx_diag.Rprof
    Untracked:  output/mmbr_gtex_res_diag.Rprof
    Untracked:  output/mnm_missing_output.20200527.rds
    Untracked:  output/test
    Untracked:  output/tiny_data_211_cond2L2.gif
    Untracked:  output/tiny_data_211_cond2L2.pdf
    Untracked:  output/tiny_data_211_cond2L3.gif
    Untracked:  output/tiny_data_211_cond2L3.pdf
    Untracked:  output/tiny_data_211_cond2initL3.gif
    Untracked:  output/tiny_data_211_cond2initL3.pdf
    Untracked:  output/ukb_rss_20200107/

Unstaged changes:
    Modified:   analysis/mmbr_missing_rss_problem1.Rmd

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
Rmd	d0376fa	zouyuxin	2021-03-09	wflow_publish(“analysis/index.Rmd”)
html	92ffd5e	zouyuxin	2021-02-11	Build site.
Rmd	813ced0	zouyuxin	2021-02-11	wflow_publish(“analysis/index.Rmd”)
html	072e906	zouyuxin	2021-01-08	Build site.
Rmd	5e7f587	zouyuxin	2021-01-08	wflow_publish(“analysis/index.Rmd”)
html	6e91c5b	zouyuxin	2020-12-22	Build site.
Rmd	7f930cb	zouyuxin	2020-12-22	wflow_publish(“analysis/index.Rmd”)
html	3cf2637	zouyuxin	2020-12-18	Build site.
Rmd	037d169	zouyuxin	2020-12-18	wflow_publish(“analysis/index.Rmd”)
html	cad91e2	zouyuxin	2020-12-02	Build site.
Rmd	c2b75cf	zouyuxin	2020-12-02	wflow_publish(“analysis/index.Rmd”)
html	59ddf37	zouyuxin	2020-11-10	Build site.
Rmd	fb1542a	zouyuxin	2020-11-10	wflow_publish(“analysis/index.Rmd”)
html	941dd8a	zouyuxin	2020-11-09	Build site.
Rmd	a45fbf7	zouyuxin	2020-11-09	wflow_publish(“analysis/index.Rmd”)
html	bad42b9	zouyuxin	2020-10-30	Build site.
Rmd	d6faf0c	zouyuxin	2020-10-30	wflow_publish(“analysis/index.Rmd”)
html	fa98467	zouyuxin	2020-10-21	Build site.
Rmd	f7ce59e	zouyuxin	2020-10-21	wflow_publish(“analysis/index.Rmd”)
html	b114d6f	zouyuxin	2020-09-21	Build site.
Rmd	6baf404	zouyuxin	2020-09-21	wflow_publish(“analysis/index.Rmd”)
html	f340cee	zouyuxin	2020-07-12	Build site.
Rmd	cbc342f	zouyuxin	2020-07-12	wflow_publish(“analysis/index.Rmd”)
html	a6d5a07	zouyuxin	2020-07-08	Build site.
Rmd	339274f	zouyuxin	2020-07-08	wflow_publish(“analysis/index.Rmd”)
Rmd	8c595db	zouyuxin	2020-07-06	solve conflict
html	8c595db	zouyuxin	2020-07-06	solve conflict
html	931570e	zouyuxin	2020-05-28	Build site.
Rmd	ef2918b	zouyuxin	2020-05-28	wflow_publish(“analysis/index.Rmd”)
html	a309337	zouyuxin	2020-03-14	Build site.
Rmd	08f69dc	zouyuxin	2020-03-14	wflow_publish(“analysis/index.Rmd”)
html	97a0659	zouyuxin	2020-03-02	Build site.
Rmd	cbb1bbb	zouyuxin	2020-03-02	wflow_publish(“analysis/index.Rmd”)
html	b9250c9	zouyuxin	2020-03-02	Build site.
Rmd	4eb3fbf	zouyuxin	2020-03-02	wflow_publish(“analysis/index.Rmd”)
Rmd	a6797ff	zouyuxin	2020-02-27	Start workflowr project.