Last updated: 2021-03-09

Checks: 2 0

Knit directory: mmbr-rss-dsc/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.


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Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version d0376fa. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    data/.DS_Store
    Ignored:    output/.DS_Store

Untracked files:
    Untracked:  data/ENSG00000140265.12.Multi_Tissues.rds
    Untracked:  data/FastQTLSumStats.mash.FL_PC3.rds
    Untracked:  data/mmbr_ukb_simulation/
    Untracked:  data/mmbr_ukb_simulation_problem/
    Untracked:  data/ukb_rss_naive_lfsr_problem.rds
    Untracked:  data/ukb_rss_naive_pip_problem.rds
    Untracked:  output/GTExprofile_res.rds
    Untracked:  output/GTExprofile_resL1.rds
    Untracked:  output/GTExprofile_resL1_elbo.rds
    Untracked:  output/GTExprofile_resL3.rds
    Untracked:  output/GTExprofile_resL3_elbo.rds
    Untracked:  output/GTExprofile_res_elbo.rds
    Untracked:  output/GTExprofile_resapprox.rds
    Untracked:  output/GTExprofile_resapproxL1.rds
    Untracked:  output/GTExprofile_resapproxL1_elbo.rds
    Untracked:  output/GTExprofile_resapproxL3.rds
    Untracked:  output/GTExprofile_resapproxL3_elbo.rds
    Untracked:  output/GTExprofile_resapprox_elbo.rds
    Untracked:  output/GTExprofile_resapproxdiag.rds
    Untracked:  output/GTExprofile_resapproxdiagL1.rds
    Untracked:  output/GTExprofile_resapproxdiagL1_elbo.rds
    Untracked:  output/GTExprofile_resapproxdiagL3.rds
    Untracked:  output/GTExprofile_resapproxdiagL3_elbo.rds
    Untracked:  output/GTExprofile_resapproxdiag_elbo.rds
    Untracked:  output/GTExprofile_resdiag.rds
    Untracked:  output/mmbr_gtex_res.Rprof
    Untracked:  output/mmbr_gtex_res_approx.Rprof
    Untracked:  output/mmbr_gtex_res_approx_diag.Rprof
    Untracked:  output/mmbr_gtex_res_diag.Rprof
    Untracked:  output/mnm_missing_output.20200527.rds
    Untracked:  output/test
    Untracked:  output/tiny_data_211_cond2L2.gif
    Untracked:  output/tiny_data_211_cond2L2.pdf
    Untracked:  output/tiny_data_211_cond2L3.gif
    Untracked:  output/tiny_data_211_cond2L3.pdf
    Untracked:  output/tiny_data_211_cond2initL3.gif
    Untracked:  output/tiny_data_211_cond2initL3.pdf
    Untracked:  output/ukb_rss_20200107/

Unstaged changes:
    Modified:   analysis/mmbr_missing_rss_problem1.Rmd

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.


These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
Rmd d0376fa zouyuxin 2021-03-09 wflow_publish(“analysis/index.Rmd”)
html 92ffd5e zouyuxin 2021-02-11 Build site.
Rmd 813ced0 zouyuxin 2021-02-11 wflow_publish(“analysis/index.Rmd”)
html 072e906 zouyuxin 2021-01-08 Build site.
Rmd 5e7f587 zouyuxin 2021-01-08 wflow_publish(“analysis/index.Rmd”)
html 6e91c5b zouyuxin 2020-12-22 Build site.
Rmd 7f930cb zouyuxin 2020-12-22 wflow_publish(“analysis/index.Rmd”)
html 3cf2637 zouyuxin 2020-12-18 Build site.
Rmd 037d169 zouyuxin 2020-12-18 wflow_publish(“analysis/index.Rmd”)
html cad91e2 zouyuxin 2020-12-02 Build site.
Rmd c2b75cf zouyuxin 2020-12-02 wflow_publish(“analysis/index.Rmd”)
html 59ddf37 zouyuxin 2020-11-10 Build site.
Rmd fb1542a zouyuxin 2020-11-10 wflow_publish(“analysis/index.Rmd”)
html 941dd8a zouyuxin 2020-11-09 Build site.
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Rmd d6faf0c zouyuxin 2020-10-30 wflow_publish(“analysis/index.Rmd”)
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Rmd f7ce59e zouyuxin 2020-10-21 wflow_publish(“analysis/index.Rmd”)
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Rmd 6baf404 zouyuxin 2020-09-21 wflow_publish(“analysis/index.Rmd”)
html f340cee zouyuxin 2020-07-12 Build site.
Rmd cbc342f zouyuxin 2020-07-12 wflow_publish(“analysis/index.Rmd”)
html a6d5a07 zouyuxin 2020-07-08 Build site.
Rmd 339274f zouyuxin 2020-07-08 wflow_publish(“analysis/index.Rmd”)
Rmd 8c595db zouyuxin 2020-07-06 solve conflict
html 8c595db zouyuxin 2020-07-06 solve conflict
html 931570e zouyuxin 2020-05-28 Build site.
Rmd ef2918b zouyuxin 2020-05-28 wflow_publish(“analysis/index.Rmd”)
html a309337 zouyuxin 2020-03-14 Build site.
Rmd 08f69dc zouyuxin 2020-03-14 wflow_publish(“analysis/index.Rmd”)
html 97a0659 zouyuxin 2020-03-02 Build site.
Rmd cbb1bbb zouyuxin 2020-03-02 wflow_publish(“analysis/index.Rmd”)
html b9250c9 zouyuxin 2020-03-02 Build site.
Rmd 4eb3fbf zouyuxin 2020-03-02 wflow_publish(“analysis/index.Rmd”)
Rmd a6797ff zouyuxin 2020-02-27 Start workflowr project.

This repository contains simulation results related to M&M RSS.

mvSuSiE full data application on GTEx

UKB simulations: