Last updated: 2022-08-01

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Knit directory: scATACseq-topics/

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Rmd 08d32c2 Peter Carbonetto 2022-08-01 workflowr::wflow_publish("analysis/index.Rmd", verbose = TRUE)
html c04a77d Peter Carbonetto 2022-05-03 Updated link in overview page.
Rmd 16eb0d9 Peter Carbonetto 2022-05-03 workflowr::wflow_publish("index.Rmd")
html e644301 Peter Carbonetto 2022-05-03 Added link to overview page.
Rmd bb54994 Peter Carbonetto 2022-05-03 workflowr::wflow_publish("index.Rmd")
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Rmd 6608114 kevinlkx 2022-03-29 added results using filtered peaks
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Rmd 7359d78 kevinlkx 2022-03-11 Updated the link for the structure plots and DA analysis for Buenrostro data
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Rmd e5e3bb2 kevinlkx 2022-03-09 added gene score analysis for Buenrostro data with k = 10
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Rmd bd51c66 kevinlkx 2022-03-09 added motif_analysis_Buenrostro2018_k10_v2.html
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Rmd 64a4ed2 kevinlkx 2022-02-24 updated with version 2 of DA analysis
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Rmd 6ffed16 kevinlkx 2021-02-24 added compare_different_k_Cusanovich2018.html
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Rmd 02f35cc kevinlkx 2021-02-05 clean the page
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Rmd 14e2172 kevinlkx 2021-02-05 reorganized the Buenrostro2018 results
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Rmd 277a73c kevinlkx 2021-01-19 fix a link
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Rmd cbb2e61 kevinlkx 2021-01-19 created separate analysis files of motif and gene analysis for Cusanovich 2018 data
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Rmd d96bcdc kevinlkx 2021-01-05 wflow_publish("analysis/index.Rmd")
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Rmd 322233d kevinlkx 2021-01-05 add results for chomVAR_scPeaks_filtered data
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Rmd c4a3ba4 kevinlkx 2020-12-23 add motif and gene analysis results for Cusanovich 2018 and Buenrostro 2018 datasets
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Rmd 3d1285c kevinlkx 2020-12-02 wflow_publish("analysis/index.Rmd")
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Rmd d2cc33a kevinlkx 2020-11-06 add PCA and k-means clustering of topic proportions for Buenrostro 2018 results
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Rmd 3105624 kevinlkx 2020-10-21 wflow_publish("analysis/index.Rmd")
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Rmd 4a0657b kevinlkx 2020-10-20 add clustering with k = 13 topics
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Rmd d8d1730 kevinlkx 2020-10-07 add PCA plots of topic proportions for Cusanovich 2018 dataset
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Rmd e7d466d kevinlkx 2020-10-07 add PCA plots of topic proportions for Cusanovich 2018 dataset
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Rmd 9bb909e kevinlkx 2020-07-29 add a link to the literatures for scATAC-seq data resources
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Rmd b09eb42 kevinlkx 2020-07-29 wflow_publish("analysis/*")
Rmd 758af0e kevinlkx 2020-07-29 Start workflowr project.

Topic modeling analysis of single-cell ATAC-seq data