Single-cell matrix factorization jamboree

Last updated: 2024-10-30

Checks: 2 0

Knit directory: single-cell-jamboree/analysis/

This reproducible R Markdown analysis was created with workflowr (version 1.7.1). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: 214ec1a

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 214ec1a. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Untracked files:
    Untracked:  data/Immune_ALL_human.h5ad
    Untracked:  data/human_pancreas_norm_complexBatch.h5ad

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
Rmd	214ec1a	Peter Carbonetto	2024-10-30	workflowr::wflow_publish("index.Rmd")
html	a3b945a	Peter Carbonetto	2024-10-30	Build site.
Rmd	5479746	Peter Carbonetto	2024-10-30	workflowr::wflow_publish("index.Rmd")
html	528d5ef	Peter Carbonetto	2024-10-30	First build of the pancreas workflowr page.
Rmd	6750e29	Peter Carbonetto	2024-10-30	workflowr::wflow_publish(c("pancreas.Rmd", "index.Rmd"))
Rmd	c090d1d	Peter Carbonetto	2024-10-30	Working on initial examination of pancreas data.
html	7638168	Peter Carbonetto	2024-10-21	Build site.
Rmd	6fcd079	Peter Carbonetto	2024-10-21	workflowr::wflow_publish("index.Rmd")
html	8a62d32	Peter Carbonetto	2024-10-21	Build the overview for the first time.
Rmd	db49e71	Peter Carbonetto	2024-10-21	workflowr::wflow_publish("index.Rmd")
Rmd	401e597	Peter Carbonetto	2024-10-21	Ran wflow_start(".",name = "single-cell-jamboree",existing = TRUE,git = FALSE).