Last updated: 2020-08-25
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Knit directory: single-cell-topics/analysis/
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| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | 66bbdf4 | Peter Carbonetto | 2020-08-18 | Implemented functions basic_pca_plot and pca_plot_with_labels in plots.R. |
| html | 64b881d | Peter Carbonetto | 2020-08-18 | Updated links in overview page. |
| Rmd | 61917ad | Peter Carbonetto | 2020-08-18 | Working on new analysis, plots_tracheal_epithelium.Rmd. |
| html | 7b10d81 | Peter Carbonetto | 2020-08-10 | A couple minor edits to the overview page. |
| Rmd | 2b9f856 | Peter Carbonetto | 2020-08-10 | wflow_publish(“index.Rmd”) |
| html | 94e55ae | Peter Carbonetto | 2020-08-10 | Updated overview page. |
| Rmd | bd72e7d | Peter Carbonetto | 2020-08-10 | wflow_publish(“index.Rmd”) |
| html | c652099 | Peter Carbonetto | 2020-07-28 | Added some explanatory text to the overview page. |
| Rmd | 7d5e9c8 | Peter Carbonetto | 2020-07-28 | wflow_publish(“index.Rmd”, view = FALSE, verbose = TRUE) |
| html | e8da766 | Peter Carbonetto | 2020-07-26 | Added more links to overview page. |
| Rmd | 3136222 | Peter Carbonetto | 2020-07-26 | wflow_publish(“index.Rmd”) |
| html | a42d6cc | Peter Carbonetto | 2020-07-26 | Fixed links in overview page. |
| Rmd | 67d1667 | Peter Carbonetto | 2020-07-26 | wflow_publish(“index.Rmd”) |
| html | 15b3a57 | Peter Carbonetto | 2020-07-26 | Added links to overview page. |
| Rmd | be55916 | Peter Carbonetto | 2020-07-26 | wflow_publish(“index.Rmd”) |
| html | c46e2fe | Peter Carbonetto | 2020-07-26 | Build home page and populated docs folder. |
| Rmd | 8890f6b | Peter Carbonetto | 2020-07-26 | wflow_publish(“index.Rmd”) |
| Rmd | 8237842 | Peter Carbonetto | 2020-07-26 | Added workflowr files. |
These pages detail the steps taken to prepare the single-cell RNA-seq data sets for topic modeling analysis.
In these pages, we compare the quality of the Poisson NMF fits with different updates (EM, CCD, SCD, with and without extrapolation), and with different \(k\).