Last updated: 2018-11-08

workflowr checks: (Click a bullet for more information)

• ✔ R Markdown file: up-to-date

  Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

• ✔ Repository version: f4372ca

  Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility. The version displayed above was the version of the Git repository at the time these results were generated.
  
  Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:

  
  Ignored files:
      Ignored:    dsc/code/Wavelab850/MEXSource/CPAnalysis.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/DownDyadHi.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/DownDyadLo.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/FAIPT.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/FCPSynthesis.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/FMIPT.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/FWPSynthesis.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/FWT2_PO.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/FWT_PBS.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/FWT_PO.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/FWT_TI.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/IAIPT.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/IMIPT.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/IWT2_PO.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/IWT_PBS.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/IWT_PO.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/IWT_TI.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/LMIRefineSeq.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/MedRefineSeq.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/UpDyadHi.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/UpDyadLo.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/WPAnalysis.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/dct_ii.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/dct_iii.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/dct_iv.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/dst_ii.mexmac
      Ignored:    dsc/code/Wavelab850/MEXSource/dst_iii.mexmac
  
  

  Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

Expand here to see past versions:

File	Version	Author	Date	Message
Rmd	f4372ca	Peter Carbonetto	2018-11-08	Moved around some of the files, and revising the home page.
html	b5453fa	Peter Carbonetto	2018-11-06	Small edit to home page.
html	4c88a8b	Peter Carbonetto	2018-11-06	A few more fixes to the home page.
Rmd	7caace6	Peter Carbonetto	2018-11-06	wflow_publish(“index.Rmd”)
Rmd	4baa137	Peter Carbonetto	2018-11-06	wflow_publish(“index.Rmd”)
html	0328612	Peter Carbonetto	2018-11-06	Re-built the home page after revamping it.
Rmd	aa4437d	Peter Carbonetto	2018-11-06	wflow_publish(“index.Rmd”)
Rmd	27bb547	Peter Carbonetto	2018-11-06	Greatly simplified the README.
html	0a6b926	Peter Carbonetto	2018-10-18	Adjusted workflowr site rendering.
html	c0faf17	Peter Carbonetto	2018-10-18	Added links to analyses in home page.
Rmd	40ad2f2	Peter Carbonetto	2018-10-18	wflow_publish(“index.Rmd”)
html	0797696	Peter Carbonetto	2018-08-23	Build site.
Rmd	80e51ae	Peter Carbonetto	2018-08-23	Start workflowr project with wflow_start().

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This repository contains data and R source code accompanying our manuscript,

Zhengrong Xing and Matthew Stephens (2016). Smoothing via Adaptive Shrinkage (smash): denoising Poisson and heteroskedastic Gaussian signals. arXiv:1709.10066.

If you find any of the source code in this repository useful for your work, please cite our paper.

The new methods can be found in the smashr package.

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This reproducible R Markdown analysis was created with workflowr 1.1.1

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