Last updated: 2020-10-26

Checks: 2 0

Knit directory: uci_covid_modeling/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: bdb793f

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version bdb793f. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    analysis/aug12_sept16_cache/
    Ignored:    analysis/aug17_sep21_cache/
    Ignored:    analysis/aug28_oct02_cache/
    Ignored:    analysis/aug2_sept6_cache/
    Ignored:    analysis/aug7_sept11_cache/
    Ignored:    analysis/index_cache/
    Ignored:    analysis/jul18_aug22_cache/
    Ignored:    analysis/jul24_aug28_cache/
    Ignored:    analysis/jul28_sept1_cache/
    Ignored:    analysis/sept02_oct09_cache/

Untracked files:
    Untracked:  analysis/sept02_oct09.Rmd
    Untracked:  code/SEIeIpRD/oc/2020-09-11_2020-10-16/

Unstaged changes:
    Modified:   analysis/_site.yml
    Modified:   analysis/index.Rmd
    Modified:   code/file_list.R
    Modified:   data/data_for_calcat.csv
    Modified:   data/oc_data.csv

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/license.Rmd) and HTML (docs/license.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
html bdb793f igoldsteinh 2020-10-21 really fixed the archived post problem
html 14f388c igoldsteinh 2020-10-21 Fixing displaying archived posts
html d7bda0b vnminin 2020-09-14 rebuilt everything just in case
html 246fc9c vnminin 2020-09-13 fixed cachign issue with prevalence plot and rounded off prevalence a bit
html 9de0db7 vnminin 2020-09-12 about page edits
html 2b665a5 vnminin 2020-09-12 tried to add google analytics unsuccessfully yet
html 5cbf476 vnminin 2020-09-08 got rid of caching warnings in the most recent archived report
html 33f234e vnminin 2020-08-27 some formatting
Rmd 4ca76fb igoldsteinh 2020-08-27 Updating website, also adding latest report Jul 11 - Aug 15
html 4ca76fb igoldsteinh 2020-08-27 Updating website, also adding latest report Jul 11 - Aug 15
html 8d52b42 igoldsteinh 2020-08-26 more updates to website
Rmd 79a6fd6 igoldsteinh 2020-08-26 updating about and license, experimenting with figure size
html 99d68f7 igoldsteinh 2020-07-29 bare bones report
Rmd 792b89a vnminin 2020-07-27 Start workflowr project.

Site Content

This work is licensed under the Creative Commons Attribution 4.0 International License.

Source Code

The source code is licensed under the MIT License.

MIT License

Copyright (c) UCI-NIH Covid Modeling Group

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.