Last updated: 2021-08-27

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Knit directory: BreedingSchemeOpt/

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Rmd 9d369ee wolfemd 2021-08-27 Publish burnInSims with the toy example completed and the full analysis almost ready to run.
html e210a1f wolfemd 2021-08-19 Build site.
Rmd 5914d8d wolfemd 2021-08-19 Publish initial sims towards a baseline set of sims using runBreedingScheme_wBurnIn
Rmd 0ebe65f wolfemd 2021-08-13 test
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html 5395509 wolfemd 2021-04-22 Build site.
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Rmd bf9f68c wolfemd 2021-04-22 Publish the workflowr workflow itself.
html fe3048a wolfemd 2021-04-22 Build site.
Rmd 9df9d9b wolfemd 2021-04-22 Publish the initial files for the Breeding Scheme Optimization Group project
Rmd 32a7aff wolfemd 2021-04-22 Start workflowr project.

Simulations

  1. Burn-in simulations:
  2. Baseline simulations:

Breeding Scheme Opt Group

Group Objectives

  • Participants learn about the usage of empirically-parameterized simulations for decision making about optimal breeding schemes.
  • Generate recommendations to NGC and stakeholders regarding key breeding scheme-related questions.

2021

Meeting 1 - 2021-Mar-12

Meeting 2 - 2021-Apr-02

Meeting 3 - 2021-Apr-23

AlphaSimHlpR first steps: Installation and quickly running the AlphaSimHlpR tutorial example.

Reducing error with new tools: Run a simple example simulation of the effect of reducing error with new tools. The first part, which currently is where my progress terminated, was to try and initiate a simulation and burn-in under phenotypic selection for several cycles before switching to genomic selection. Spoiler alert: Still needs work.

Creating this workflowR page for the group:

Meeting 4 - 2021-Jul-02

Meeting Slides: Concept for empirically estimating selection error described.