Last updated: 2020-09-16
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Knit directory: IITA_2020GS/
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Objective of this analysis is to refresh the IITA genomic predictions for all available germplasm, but especially adding the 45 trials listed by Ismail Rabbi on Sep. 14, 2020 (printed below). Clones are already planted in a mixed crossing block in Ubiaja and the new set of GEBV and GETGV will be used for selecting parents and crosses.
We may try optimal contributions. For now skip cross-validation.
Re-prediction of NRCRI germplasm. Updating available training data as of April 2020. Produce GEBV and GETGV.
From Ismail Rabbi on 14 Sep. 2020:
We finished uploading to cassavabase the trials harvested so far. A few trials remain but we cant wait for them since flowering in Ubiaja is kicking in.
R version 4.0.2 (2020-06-22)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Mojave 10.14.6
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] workflowr_1.6.2
loaded via a namespace (and not attached):
[1] Rcpp_1.0.5 whisker_0.4 knitr_1.29 magrittr_1.5
[5] hms_0.5.3 here_0.1 R6_2.4.1 rlang_0.4.7
[9] stringr_1.4.0 tools_4.0.2 xfun_0.17 git2r_0.27.1
[13] htmltools_0.5.0 ellipsis_0.3.1 yaml_2.2.1 digest_0.6.25
[17] rprojroot_1.3-2 tibble_3.0.3 lifecycle_0.2.0 crayon_1.3.4
[21] readr_1.3.1 later_1.1.0.1 vctrs_0.3.4 promises_1.1.1
[25] fs_1.5.0 glue_1.4.2 evaluate_0.14 rmarkdown_2.3
[29] stringi_1.5.3 compiler_4.0.2 pillar_1.4.6 backports_1.1.9
[33] jsonlite_1.7.1 httpuv_1.5.4 pkgconfig_2.0.3