Last updated: 2024-09-16
Checks: 2 0
Knit directory: rss-gsea/
This reproducible R Markdown analysis was created with workflowr (version 1.7.1). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.
Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.
Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.
The results in this page were generated with repository version b4d5d4d. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.
Note that you need to be careful to ensure that all relevant files for
the analysis have been committed to Git prior to generating the results
(you can use wflow_publish
or
wflow_git_commit
). workflowr only checks the R Markdown
file, but you know if there are other scripts or data files that it
depends on. Below is the status of the Git repository when the results
were generated:
Ignored files:
Ignored: .Rproj.user/
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
These are the previous versions of the repository in which changes were
made to the R Markdown (analysis/license.Rmd
) and HTML
(docs/license.html
) files. If you’ve configured a remote
Git repository (see ?wflow_git_remote
), click on the
hyperlinks in the table below to view the files as they were in that
past version.
File | Version | Author | Date | Message |
---|---|---|---|---|
html | 7223781 | Xiang Zhu | 2019-02-18 | Build site. |
html | 7e484b8 | Xiang Zhu | 2018-12-26 | Build site. |
Rmd | a0fe25c | Xiang Zhu | 2018-12-26 | wflow_publish("analysis/license.Rmd") |
html | 6b9c441 | Xiang Zhu | 2018-12-26 | Build site. |
Rmd | 2217178 | Xiang Zhu | 2018-12-26 | wflow_publish("analysis/license.Rmd") |
html | db3c134 | Xiang Zhu | 2018-10-29 | Build site. |
Rmd | cda0864 | Xiang Zhu | 2018-10-29 | wflow_publish("analysis/license.Rmd") |
html | 6fcb3cf | Xiang Zhu | 2018-10-29 | Build site. |
Rmd | abed2b1 | Xiang Zhu | 2018-10-29 | wflow_publish("analysis/license.Rmd") |
html | 4cd1ff8 | Xiang Zhu | 2018-10-19 | Build site. |
Rmd | 7d05b78 | Xiang Zhu | 2018-10-19 | wflow_publish("analysis/license.Rmd") |
html | 1c85967 | Xiang Zhu | 2018-10-05 | Build site. |
html | ff6afd0 | Xiang Zhu | 2018-06-26 | Build site. |
Rmd | bf31edf | Xiang Zhu | 2018-06-26 | wflow_publish(files = c("analysis/index.Rmd", "analysis/license.Rmd")) |
Rmd | cee1a92 | Xiang Zhu | 2018-06-26 | Start workflowr project. |
This notebook is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this notebook are included in the notebook’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the notebook’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
If you use any results from this notebook, please explicitly acknowledge that the results are retrieved from https://doi.org/10.5281/zenodo.1473807, and cite the following article:
Xiang Zhu and Matthew Stephens (2018). Large-scale genome-wide enrichment analyses identify new trait-associated genes and pathways across 31 human phenotypes. Nature Communications 9, 4361. https://doi.org/10.1038/s41467-018-06805-x.
The source code in the notebook is licensed under the GNU General Public License, version 3.0 (GPLv3).
Icons used in this notebook are credited to the Noun Project https://thenounproject.com.