Last updated: 2019-08-20

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Knit directory: rss-peca/

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Rmd 1a85c20 xiangzhu 2019-08-20 wflow_publish(“analysis/index.Rmd”)
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Rmd c07849b Xiang Zhu 2018-07-19 Start workflowr project.

Overview

This is my online notebook to document and share the full results of whole-genome integrated analyses of regulatory networks and complex traits described in the manuscript:

TBA

If you find the analysis results, the pre-processed networks, the statistical methods, and/or the open-source software useful for your work, please kindly cite our manuscript listed above, Zhu et al (2019).

If you have any question about the notebook and/or the manuscript, please feel free to contact me: Xiang Zhu, xiangzhu[at]stanford.edu.

Main results

For each phenotype below, please click to view network enrichment results, and click to view gene prioritization results. Please note that loading pages of gene prioritization results may take a while because of the large number of genes displayed.

Phenotype (GWAS publication) Network enrichment Gene prioritization
Adult height (Wood et al. 2014)
Inflammatory bowel disease (Liu et al. 2015)
Low-density lipoprotein (Teslovich et al. 2010)
Alzheimer’s disease (Lambert et al. 2013)
Schizophrenia (Ripke et al. 2014)

Additional resources

TBA


─ Session info ──────────────────────────────────────────────────────────
 setting  value                       
 version  R version 3.6.1 (2019-07-05)
 os       Ubuntu 18.04.3 LTS          
 system   x86_64, linux-gnu           
 ui       X11                         
 language (EN)                        
 collate  en_US.UTF-8                 
 ctype    en_US.UTF-8                 
 tz       America/Los_Angeles         
 date     2019-08-20                  

─ Packages ──────────────────────────────────────────────────────────────
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 workflowr     1.4.0   2019-06-08 [1] CRAN (R 3.6.0)
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 yaml          2.2.0   2018-07-25 [1] CRAN (R 3.6.0)

[1] /home/maimaizhu/R/x86_64-pc-linux-gnu-library/3.6
[2] /usr/local/lib/R/site-library
[3] /usr/lib/R/site-library
[4] /usr/lib/R/library