Last updated: 2019-03-06

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Expand here to see past versions:
    File Version Author Date Message
    html 3d2c5f6 Yasin Kaymaz 2019-03-06 Build site.
    Rmd 53e6dd4 Yasin Kaymaz 2019-03-06 violin plots
    html f4d0605 Yasin Kaymaz 2019-03-05 Build site.
    html ced17ea Yasin Kaymaz 2019-03-05 Build site.
    html c534f45 Yasin Kaymaz 2019-03-04 Build site.
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    Rmd 1be7385 Yasin Kaymaz 2019-03-04 initial commit

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Session information

sessionInfo()
R version 3.5.0 (2018-04-23)
Platform: x86_64-apple-darwin17.5.0 (64-bit)
Running under: macOS  10.14.3

Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] Seurat_2.3.3    Matrix_1.2-14   cowplot_0.9.3   here_0.1       
 [5] forcats_0.3.0   stringr_1.4.0   dplyr_0.7.6     purrr_0.2.5    
 [9] readr_1.1.1     tidyr_0.8.1     tibble_2.0.1    tidyverse_1.2.1
[13] DT_0.4          plotly_4.8.0    ggplot2_3.1.0  

loaded via a namespace (and not attached):
  [1] readxl_1.1.0         snow_0.4-3           backports_1.1.2     
  [4] Hmisc_4.1-1          workflowr_1.1.1      plyr_1.8.4          
  [7] igraph_1.2.1         lazyeval_0.2.1       splines_3.5.0       
 [10] digest_0.6.18        foreach_1.4.4        htmltools_0.3.6     
 [13] lars_1.2             gdata_2.18.0         magrittr_1.5        
 [16] checkmate_1.8.5      cluster_2.0.7-1      mixtools_1.1.0      
 [19] ROCR_1.0-7           modelr_0.1.2         R.utils_2.6.0       
 [22] colorspace_1.4-0     rvest_0.3.2          haven_1.1.2         
 [25] crayon_1.3.4         jsonlite_1.6         bindr_0.1.1         
 [28] survival_2.42-6      zoo_1.8-3            iterators_1.0.10    
 [31] ape_5.1              glue_1.3.0           gtable_0.2.0        
 [34] kernlab_0.9-26       prabclus_2.2-6       DEoptimR_1.0-8      
 [37] scales_1.0.0         mvtnorm_1.0-8        Rcpp_1.0.0          
 [40] metap_0.9            dtw_1.20-1           viridisLite_0.3.0   
 [43] htmlTable_1.12       reticulate_1.9       foreign_0.8-70      
 [46] bit_1.1-14           proxy_0.4-22         mclust_5.4.1        
 [49] SDMTools_1.1-221     Formula_1.2-3        stats4_3.5.0        
 [52] tsne_0.1-3           htmlwidgets_1.2      httr_1.3.1          
 [55] gplots_3.0.1         RColorBrewer_1.1-2   fpc_2.1-11          
 [58] acepack_1.4.1        modeltools_0.2-22    ica_1.0-2           
 [61] pkgconfig_2.0.2      R.methodsS3_1.7.1    flexmix_2.3-14      
 [64] nnet_7.3-12          tidyselect_0.2.4     rlang_0.3.1         
 [67] reshape2_1.4.3       munsell_0.5.0        cellranger_1.1.0    
 [70] tools_3.5.0          cli_1.0.1            broom_0.5.0         
 [73] ggridges_0.5.0       evaluate_0.10.1      yaml_2.2.0          
 [76] knitr_1.20           bit64_0.9-7          fitdistrplus_1.0-9  
 [79] robustbase_0.93-1    caTools_1.17.1       RANN_2.6            
 [82] bindrcpp_0.2.2       pbapply_1.4-0        nlme_3.1-137        
 [85] whisker_0.3-2        R.oo_1.22.0          xml2_1.2.0          
 [88] hdf5r_1.0.1          compiler_3.5.0       rstudioapi_0.8      
 [91] png_0.1-7            stringi_1.2.4        lattice_0.20-35     
 [94] trimcluster_0.1-2    diffusionMap_1.1-0   pillar_1.3.1        
 [97] lmtest_0.9-36        data.table_1.11.4    bitops_1.0-6        
[100] irlba_2.3.2          R6_2.3.0             latticeExtra_0.6-28 
[103] KernSmooth_2.23-15   gridExtra_2.3        codetools_0.2-15    
[106] MASS_7.3-50          gtools_3.8.1         assertthat_0.2.0    
[109] rprojroot_1.3-2      withr_2.1.2          diptest_0.75-7      
[112] parallel_3.5.0       doSNOW_1.0.16        hms_0.4.2           
[115] grid_3.5.0           rpart_4.1-13         class_7.3-14        
[118] rmarkdown_1.10       segmented_0.5-3.0    Rtsne_0.15          
[121] git2r_0.23.0         scatterplot3d_0.3-41 lubridate_1.7.4     
[124] base64enc_0.1-3

This reproducible R Markdown analysis was created with workflowr 1.1.1