Isoform level Contrasts
Yasin Kaymaz
1/31/2019
Last updated: 2019-03-15
Checks: 6 0
Knit directory: Harvard-RosenbrockLab/
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| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | ae57569 | Yasin Kaymaz | 2019-03-15 | isoform results |
| html | 1abd5c7 | Yasin Kaymaz | 2019-03-15 | Build site. |
| Rmd | dbac3ec | Yasin Kaymaz | 2019-03-15 | isoform results |
Isoform expression distributions among cells in each group
Violin plots show normalized expression distribution of the isoform of the given gene in each cell (black dots) binned in various groups. y-axis is in log2 scale!
Expression distributions based on brain regions
Expression distributions based on cell subsets identified in Hook et al.
Gpr83 isoforms:
| Version | Author | Date |
|---|---|---|
| 1abd5c7 | Yasin Kaymaz | 2019-03-15 |
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sessionInfo()R version 3.5.0 (2018-04-23)
Platform: x86_64-apple-darwin17.5.0 (64-bit)
Running under: macOS 10.14.3
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] Seurat_2.3.4 Matrix_1.2-14 cowplot_0.9.4 here_0.1
[5] forcats_0.4.0 stringr_1.4.0 dplyr_0.8.0.1 purrr_0.3.1
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[13] DT_0.5 plotly_4.8.0 ggplot2_3.1.0
loaded via a namespace (and not attached):
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[49] SDMTools_1.1-221 Formula_1.2-3 tsne_0.1-3
[52] stats4_3.5.0 htmlwidgets_1.3 httr_1.4.0
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