Last updated: 2019-05-01

Checks: 2 0

Knit directory: dsc-susie-z/

This reproducible R Markdown analysis was created with workflowr (version 1.3.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: 4299a41

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility. The version displayed above was the version of the Git repository at the time these results were generated.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    .sos/
    Ignored:    analysis/.DS_Store
    Ignored:    data/.DS_Store
    Ignored:    output/.DS_Store

Untracked files:
    Untracked:  data/random_data_31.rds
    Untracked:  data/random_data_31_sim_gaussian_35.rds
    Untracked:  data/random_data_31_sim_gaussian_35_get_sumstats_1.rds
    Untracked:  data/small_data_1.ld_in_file.in.ld
    Untracked:  data/small_data_1.ld_out_file.out.ld
    Untracked:  data/small_data_132.ld_in_file.in.ld
    Untracked:  data/small_data_132.ld_out_file.out.ld
    Untracked:  data/small_data_132_sim_gaussian_12.rds
    Untracked:  data/small_data_132_sim_gaussian_12_get_sumstats_1.rds
    Untracked:  data/small_data_1_sim_gaussian_2.rds
    Untracked:  data/small_data_1_sim_gaussian_2_get_sumstats_1.rds
    Untracked:  data/small_data_46.rds
    Untracked:  data/small_data_46_sim_gaussian_10.rds
    Untracked:  data/small_data_46_sim_gaussian_10_get_sumstats_2.rds
    Untracked:  data/small_data_69.ld_in_file.in.ld
    Untracked:  data/small_data_69.ld_out_file.out.ld
    Untracked:  data/small_data_69.rds
    Untracked:  data/small_data_69_sim_gaussian_3.rds
    Untracked:  data/small_data_69_sim_gaussian_3_get_sumstats_1.rds
    Untracked:  data/small_data_69_sim_gaussian_3_get_sumstats_1_susie_z_1.rds
    Untracked:  data/small_data_69_sim_gaussian_3_get_sumstats_1_susie_z_2.rds
    Untracked:  figure/
    Untracked:  output/dscoutProblem475.rds
    Untracked:  output/dscoutProblem75.rds
    Untracked:  output/finemap_compare_random_data_null_dscout.rds
    Untracked:  output/finemap_compare_random_data_signal_dscout.rds
    Untracked:  output/finemap_compare_small_data_signal_dscout.rds
    Untracked:  output/finemap_compare_small_data_signal_dscout_RE8.rds
    Untracked:  output/r_compare_FINEMAP_PIP_ROC.rds
    Untracked:  output/r_compare_add_z_FINEMAP_PIP_ROC.rds
    Untracked:  output/r_compare_add_z_FINEMAP_ROC.rds
    Untracked:  output/r_compare_add_z_SuSiEb_ROC.rds
    Untracked:  output/r_compare_add_z_SuSiErss_ROC.rds
    Untracked:  output/r_compare_add_z_dscout_susie_finemap_tibble.rds
    Untracked:  output/r_compare_add_z_lambda_FINEMAP_ROC.rds
    Untracked:  output/r_compare_add_z_lambda_SuSiEb_ROC.rds
    Untracked:  output/r_compare_add_z_lambda_SuSiErss_ROC.rds
    Untracked:  output/r_compare_add_z_lambda_dscout_susie_finemap_tibble.rds
    Untracked:  output/r_compare_dscout_susie_finemappip_tibble.rds
    Untracked:  output/r_compare_dscout_susie_finemappip_truth_tibble.rds
    Untracked:  output/r_compare_susieb_PIP_ROC.rds
    Untracked:  output/r_compare_susiepip_tibble.rds
    Untracked:  output/r_compare_susierss_PIP_ROC.rds
    Untracked:  output/random_data_100_sim_gaussian_null_1_get_sumstats_1_finemap_1.rds
    Untracked:  output/random_data_31_35_fit_em.rds
    Untracked:  output/random_data_76.rds
    Untracked:  output/random_data_76_sim_gaussian_8.rds
    Untracked:  output/random_data_76_sim_gaussian_8_get_sumstats_1.rds
    Untracked:  output/small_data_42_sim_gaussian_36_get_sumstats_2_susie_z_2.rds
    Untracked:  output/small_data_92_sim_gaussian_30_get_sumstats_2_susie_z_2.rds

Unstaged changes:
    Modified:   analysis/SuSiErssNotConverge.Rmd
    Modified:   analysis/SusieZPerformance.Rmd
    Modified:   analysis/SusieZPerformanceRE3.Rmd
    Modified:   output/dsc_susie_z_v_output.rds

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the R Markdown and HTML files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view them.

File Version Author Date Message
Rmd 4299a41 zouyuxin 2019-05-01 wflow_publish(“analysis/index.Rmd”)
html b5ec7e3 zouyuxin 2019-04-30 Build site.
Rmd e6a00a4 zouyuxin 2019-04-30 wflow_publish(“analysis/index.Rmd”)
html a712050 zouyuxin 2019-04-24 Build site.
Rmd f6e92c6 zouyuxin 2019-04-24 wflow_publish(“analysis/index.Rmd”)
html 24d19f4 zouyuxin 2019-04-24 Build site.
Rmd 1303c25 zouyuxin 2019-04-24 wflow_publish(“analysis/index.Rmd”)
html 1d7a525 zouyuxin 2019-04-16 Build site.
html a9ecf62 zouyuxin 2019-04-15 Build site.
Rmd c558dc1 zouyuxin 2019-04-15 wflow_publish(“analysis/index.Rmd”)
html 3915ed4 zouyuxin 2019-04-15 Build site.
Rmd c101ada zouyuxin 2019-04-15 wflow_publish(“analysis/index.Rmd”)
html 0e143b6 zouyuxin 2019-04-15 Build site.
Rmd df60eac zouyuxin 2019-04-15 wflow_publish(“analysis/index.Rmd”)
html 0e2f6df zouyuxin 2019-03-12 Build site.
Rmd 13a6b56 zouyuxin 2019-03-12 wflow_publish(“analysis/index.Rmd”)
html 4cc29fd zouyuxin 2019-03-03 Build site.
Rmd a2686b9 zouyuxin 2019-03-03 wflow_publish(“analysis/index.Rmd”)
html 8d36de3 zouyuxin 2019-03-03 Build site.
Rmd 4c08b97 zouyuxin 2019-03-03 wflow_publish(“analysis/index.Rmd”)
html 392a2e5 zouyuxin 2019-02-24 Build site.
Rmd bb256df zouyuxin 2019-02-24 wflow_publish(“analysis/index.Rmd”)
html b89dba8 zouyuxin 2019-02-21 Build site.
Rmd b61eba3 zouyuxin 2019-02-21 wflow_publish(“analysis/index.Rmd”)
html 0fc5650 zouyuxin 2019-02-17 Build site.
Rmd 1c65da2 zouyuxin 2019-02-17 wflow_publish(“analysis/index.Rmd”)
html aa74837 zouyuxin 2019-02-15 Build site.
Rmd 2a566dd zouyuxin 2019-02-15 wflow_publish(“analysis/index.Rmd”)
html 796bdf7 zouyuxin 2019-01-17 Build site.
Rmd 6431042 zouyuxin 2019-01-17 wflow_publish(“analysis/index.Rmd”)
html beb0685 zouyuxin 2019-01-15 Build site.
Rmd c915005 zouyuxin 2019-01-15 Start workflowr project.

Welcome to my research website.

SuSiE z vs DAP Power in one data set