Last updated: 2021-02-12

Checks: 1 1

Knit directory: melanoma_publication_old_data/

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File Version Author Date Message
html 2e443a5 toobiwankenobi 2021-02-09 remove files that are not needed
html d1c9a41 toobiwankenobi 2021-02-09 index file
html 3828d53 toobiwankenobi 2021-02-09 index file
html c19bae4 toobiwankenobi 2021-02-09 add index file
Rmd f075b06 toobiwankenobi 2020-07-28 Start workflowr project.

Multiplexed Imaging Mass Cytometry in Metastatic Melanoma Utilizing RNA and Protein Co-Detection Links Features of Response to Immunotherapy 1

Tobias Hoch\(^{1,2,4,*}\), Daniel Schulz\(^{1,2,4}\), Nils Eling\(^{1,2}\), Julia Martínez Gómez\(^{3}\), Mitch Levesque\(^{3}\), Bernd Bodenmiller\(^{1,2,5,*}\)

1 University of Zurich, Department of Quantitative Biomedicine, Zurich, 8057, Switzerland
2 ETH Zurich, Institute for Molecular Health Sciences, Zurich, 8093 Switzerland
3 University Hospital Zurich, Department of Dermatology, Schlieren, 8952, Switzerland
4 These authors contributed equally
5 Lead Contact
* Correspondence:

Introduction

This page contains all pre-processing of single-cell data and scripts to generate all Figures and Supplementary Figures.

How-To reproduce the pipeline

  1. Download the data at
  2. clone the GitHub repository
  3. Move the downloaded data in the repo folder “data/”
  4. Install the required packages
  5. Run the pipeline