Last updated: 2024-01-09

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Knit directory: mi_spatialomics/

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Repository version: 60d835c

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File Version Author Date Message
html 2dcd178 FloWuenne 2023-12-06 wflow_publish("*")
Rmd 5dee03d FloWuenne 2023-09-04 Latest code update.
html 5dee03d FloWuenne 2023-09-04 Latest code update.
html d7ea71e FloWuenne 2023-08-11 Build site.
Rmd 64318a3 FloWuenne 2023-08-11 wflow_publish(c("analysis/molkart.process_quantifications_seurat.Rmd",
Rmd 9b98d64 FloWuenne 2023-08-04 Updated python and R scripts for Molkart.
html 67e546d FloWuenne 2023-07-23 Build site.
Rmd ed31d81 FloWuenne 2023-07-02 Finalized proteomics analysis.
html ed31d81 FloWuenne 2023-07-02 Finalized proteomics analysis.
html c1395e6 FloWuenne 2023-06-20 Build site.
Rmd 236130c FloWuenne 2023-06-20 Updating proteomic analysis.
html 236130c FloWuenne 2023-06-20 Updating proteomic analysis.
html 05aec09 FloWuenne 2023-06-14 Build site.
Rmd 0eba381 FloWuenne 2023-06-14 Updating Data analysis links.
html 0eba381 FloWuenne 2023-06-14 Updating Data analysis links.
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Rmd 2d015dd FloWuenne 2023-06-14 Finalized imputation with RF.
html 2d015dd FloWuenne 2023-06-14 Finalized imputation with RF.
html 5816aca FloWuenne 2023-06-12 Build site.
Rmd 3b5ca40 FloWuenne 2023-06-12 Added code for supplementary Figures.
html 3b5ca40 FloWuenne 2023-06-12 Added code for supplementary Figures.
html e3bbd70 FloWuenne 2023-06-12 Build site.
Rmd 412d64f FloWuenne 2023-06-12 Fixed links in data_analysis
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Rmd ff0c849 FloWuenne 2023-06-12 wflow_publish("*")
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Rmd ebb85a5 FloWuenne 2023-06-12 Updated organization for proteomics data analysis.
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html d764fa8 FloWuenne 2023-06-12 Build site.
Rmd 62020bf FloWuenne 2023-06-12 Configure site header.

Molecular Cartography

These scripts were used to analyze Molecular Cartography data from the nf-Molkart pipeline.

  1. QC RNA spots This script will
  2. Seurat analysis of Molkart output
  3. Misty and abundance analysis