Last updated: 2024-01-09

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Knit directory: mi_spatialomics/

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Repository version: 60d835c

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File Version Author Date Message
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html 2dcd178 FloWuenne 2023-12-06 wflow_publish("*")
Rmd 5dee03d FloWuenne 2023-09-04 Latest code update.
html 5dee03d FloWuenne 2023-09-04 Latest code update.
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html 3b5ca40 FloWuenne 2023-06-12 Added code for supplementary Figures.
html 51754b9 FloWuenne 2023-06-12 Build site.
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Rmd 62020bf FloWuenne 2023-06-12 Configure site header.

Molecular Cartography

Processing of raw data

The raw Molecular Cartography data was processed using the nf-core/molkart pipeline (revision: 81eafe9f9993d4daf16371ba3804ce9ae08053ad). The configurations, parameters and models used to reproduce the processing can be found in Synapse in the following location:

/Molecular_Cartography/nfcore_molkart

All downstream processing after nf-core/molkart was performed in R and python using scripts provided and documented in this repository. See Data processing for details.

Lunaphore

Raw Lunaphore images were processed using MCMICRO. The configurations, parameters and commands used can be found in the following files: