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Supplementary material reporting R code for the manuscript ‘Population density affects sexual selection in an insect model’.

Part 5: Total sexual selection on males

Finally, we calculated the total opportunity for sexual selection (ITS) for males as I_TS=var(MS)+var(PS)+2 cov(MS,PS). We used relativized data and bootstrapping to estimate ITS and two-sided permutation tests to compare it between treatments.

Load and prepare data

Before we started the analyses, we loaded all necessary packages and data.

rm(list = ls()) # Clear work environment

# Load R-packages ####
list_of_packages=cbind('ggeffects','ggplot2','gridExtra','lme4','lmerTest','readr','dplyr','EnvStats','cowplot','gridGraphics','car','RColorBrewer','boot','data.table','base','ICC','knitr')
lapply(list_of_packages, require, character.only = TRUE) 

# Load data set ####
D_data=read_delim("./data/Data_Winkler_et_al_2023_Denstiy.csv",";", escape_double = FALSE, trim_ws = TRUE)

# Set factors and levels for factors
D_data$Week=as.factor(D_data$Week)
D_data$Sex=as.factor(D_data$Sex)
D_data$Gr_size=as.factor(D_data$Gr_size)
D_data$Gr_size <- factor(D_data$Gr_size, levels=c("SG","LG"))
D_data$Arena=as.factor(D_data$Arena)

## Subset data set ####
### Data according to denstiy ####
D_data_0.26=D_data[D_data$Treatment=='D = 0.26',]
D_data_0.52=D_data[D_data$Treatment=='D = 0.52',]
D_data_0.67=D_data[D_data$Treatment=='D = 0.67',]
D_data_1.33=D_data[D_data$Treatment=='D = 1.33',]

### Subset data by sex ####
D_data_m=D_data[D_data$Sex=='M',]
D_data_f=D_data[D_data$Sex=='F',]

### Calculate data relativized within treatment and sex ####
# Small group + large Area
D_data_0.26=D_data[D_data$Treatment=='D = 0.26',]

D_data_0.26$rel_m_RS=NA
D_data_0.26$rel_m_prop_RS=NA
D_data_0.26$rel_m_cMS=NA
D_data_0.26$rel_m_InSuc=NA
D_data_0.26$rel_m_feSuc=NA
D_data_0.26$rel_m_pFec=NA
D_data_0.26$rel_m_PS=NA
D_data_0.26$rel_m_pFec_compl=NA

D_data_0.26$rel_f_RS=NA
D_data_0.26$rel_f_prop_RS=NA
D_data_0.26$rel_f_cMS=NA
D_data_0.26$rel_f_fec_pMate=NA

D_data_0.26$rel_m_RS=D_data_0.26$m_RS/mean(D_data_0.26$m_RS,na.rm=T)
D_data_0.26$rel_m_prop_RS=D_data_0.26$m_prop_RS/mean(D_data_0.26$m_prop_RS,na.rm=T)
D_data_0.26$rel_m_cMS=D_data_0.26$m_cMS/mean(D_data_0.26$m_cMS,na.rm=T)
D_data_0.26$rel_m_InSuc=D_data_0.26$m_InSuc/mean(D_data_0.26$m_InSuc,na.rm=T)
D_data_0.26$rel_m_feSuc=D_data_0.26$m_feSuc/mean(D_data_0.26$m_feSuc,na.rm=T)
D_data_0.26$rel_m_pFec=D_data_0.26$m_pFec/mean(D_data_0.26$m_pFec,na.rm=T)
D_data_0.26$rel_m_PS=D_data_0.26$m_PS/mean(D_data_0.26$m_PS,na.rm=T)
D_data_0.26$rel_m_pFec_compl=D_data_0.26$m_pFec_compl/mean(D_data_0.26$m_pFec_compl,na.rm=T)

D_data_0.26$rel_f_RS=D_data_0.26$f_RS/mean(D_data_0.26$f_RS,na.rm=T)
D_data_0.26$rel_f_prop_RS=D_data_0.26$f_prop_RS/mean(D_data_0.26$f_prop_RS,na.rm=T)
D_data_0.26$rel_f_cMS=D_data_0.26$f_cMS/mean(D_data_0.26$f_cMS,na.rm=T)
D_data_0.26$rel_f_fec_pMate=D_data_0.26$f_fec_pMate/mean(D_data_0.26$f_fec_pMate,na.rm=T)

# Large group + large Area
D_data_0.52=D_data[D_data$Treatment=='D = 0.52',]
#Relativize data

D_data_0.52$rel_m_RS=NA
D_data_0.52$rel_m_prop_RS=NA
D_data_0.52$rel_m_cMS=NA
D_data_0.52$rel_m_InSuc=NA
D_data_0.52$rel_m_feSuc=NA
D_data_0.52$rel_m_pFec=NA
D_data_0.52$rel_m_PS=NA
D_data_0.52$rel_m_pFec_compl=NA

D_data_0.52$rel_f_RS=NA
D_data_0.52$rel_f_prop_RS=NA
D_data_0.52$rel_f_cMS=NA
D_data_0.52$rel_f_fec_pMate=NA

D_data_0.52$rel_m_RS=D_data_0.52$m_RS/mean(D_data_0.52$m_RS,na.rm=T)
D_data_0.52$rel_m_prop_RS=D_data_0.52$m_prop_RS/mean(D_data_0.52$m_prop_RS,na.rm=T)
D_data_0.52$rel_m_cMS=D_data_0.52$m_cMS/mean(D_data_0.52$m_cMS,na.rm=T)
D_data_0.52$rel_m_InSuc=D_data_0.52$m_InSuc/mean(D_data_0.52$m_InSuc,na.rm=T)
D_data_0.52$rel_m_feSuc=D_data_0.52$m_feSuc/mean(D_data_0.52$m_feSuc,na.rm=T)
D_data_0.52$rel_m_pFec=D_data_0.52$m_pFec/mean(D_data_0.52$m_pFec,na.rm=T)
D_data_0.52$rel_m_PS=D_data_0.52$m_PS/mean(D_data_0.52$m_PS,na.rm=T)
D_data_0.52$rel_m_pFec_compl=D_data_0.52$m_pFec_compl/mean(D_data_0.52$m_pFec_compl,na.rm=T)

D_data_0.52$rel_f_RS=D_data_0.52$f_RS/mean(D_data_0.52$f_RS,na.rm=T)
D_data_0.52$rel_f_prop_RS=D_data_0.52$f_prop_RS/mean(D_data_0.52$f_prop_RS,na.rm=T)
D_data_0.52$rel_f_cMS=D_data_0.52$f_cMS/mean(D_data_0.52$f_cMS,na.rm=T)
D_data_0.52$rel_f_fec_pMate=D_data_0.52$f_fec_pMate/mean(D_data_0.52$f_fec_pMate,na.rm=T)

# Small group + small Area
D_data_0.67=D_data[D_data$Treatment=='D = 0.67',]
#Relativize data
D_data_0.67$rel_m_RS=NA
D_data_0.67$rel_m_prop_RS=NA
D_data_0.67$rel_m_cMS=NA
D_data_0.67$rel_m_InSuc=NA
D_data_0.67$rel_m_feSuc=NA
D_data_0.67$rel_m_pFec=NA
D_data_0.67$rel_m_PS=NA
D_data_0.67$rel_m_pFec_compl=NA

D_data_0.67$rel_f_RS=NA
D_data_0.67$rel_f_prop_RS=NA
D_data_0.67$rel_f_cMS=NA
D_data_0.67$rel_f_fec_pMate=NA

D_data_0.67$rel_m_RS=D_data_0.67$m_RS/mean(D_data_0.67$m_RS,na.rm=T)
D_data_0.67$rel_m_prop_RS=D_data_0.67$m_prop_RS/mean(D_data_0.67$m_prop_RS,na.rm=T)
D_data_0.67$rel_m_cMS=D_data_0.67$m_cMS/mean(D_data_0.67$m_cMS,na.rm=T)
D_data_0.67$rel_m_InSuc=D_data_0.67$m_InSuc/mean(D_data_0.67$m_InSuc,na.rm=T)
D_data_0.67$rel_m_feSuc=D_data_0.67$m_feSuc/mean(D_data_0.67$m_feSuc,na.rm=T)
D_data_0.67$rel_m_pFec=D_data_0.67$m_pFec/mean(D_data_0.67$m_pFec,na.rm=T)
D_data_0.67$rel_m_PS=D_data_0.67$m_PS/mean(D_data_0.67$m_PS,na.rm=T)
D_data_0.67$rel_m_pFec_compl=D_data_0.67$m_pFec_compl/mean(D_data_0.67$m_pFec_compl,na.rm=T)

D_data_0.67$rel_f_RS=D_data_0.67$f_RS/mean(D_data_0.67$f_RS,na.rm=T)
D_data_0.67$rel_f_prop_RS=D_data_0.67$f_prop_RS/mean(D_data_0.67$f_prop_RS,na.rm=T)
D_data_0.67$rel_f_cMS=D_data_0.67$f_cMS/mean(D_data_0.67$f_cMS,na.rm=T)
D_data_0.67$rel_f_fec_pMate=D_data_0.67$f_fec_pMate/mean(D_data_0.67$f_fec_pMate,na.rm=T)

# Large group + small Area
D_data_1.33=D_data[D_data$Treatment=='D = 1.33',]
#Relativize data

D_data_1.33$rel_m_RS=NA
D_data_1.33$rel_m_prop_RS=NA
D_data_1.33$rel_m_cMS=NA
D_data_1.33$rel_m_InSuc=NA
D_data_1.33$rel_m_feSuc=NA
D_data_1.33$rel_m_pFec=NA
D_data_1.33$rel_m_PS=NA
D_data_1.33$rel_m_pFec_compl=NA

D_data_1.33$rel_f_RS=NA
D_data_1.33$rel_f_prop_RS=NA
D_data_1.33$rel_f_cMS=NA
D_data_1.33$rel_f_fec_pMate=NA

D_data_1.33$rel_m_RS=D_data_1.33$m_RS/mean(D_data_1.33$m_RS,na.rm=T)
D_data_1.33$rel_m_prop_RS=D_data_1.33$m_prop_RS/mean(D_data_1.33$m_prop_RS,na.rm=T)
D_data_1.33$rel_m_cMS=D_data_1.33$m_cMS/mean(D_data_1.33$m_cMS,na.rm=T)
D_data_1.33$rel_m_InSuc=D_data_1.33$m_InSuc/mean(D_data_1.33$m_InSuc,na.rm=T)
D_data_1.33$rel_m_feSuc=D_data_1.33$m_feSuc/mean(D_data_1.33$m_feSuc,na.rm=T)
D_data_1.33$rel_m_pFec=D_data_1.33$m_pFec/mean(D_data_1.33$m_pFec,na.rm=T)
D_data_1.33$rel_m_PS=D_data_1.33$m_PS/mean(D_data_1.33$m_PS,na.rm=T)
D_data_1.33$rel_m_pFec_compl=D_data_1.33$m_pFec_compl/mean(D_data_1.33$m_pFec_compl,na.rm=T)

D_data_1.33$rel_f_RS=D_data_1.33$f_RS/mean(D_data_1.33$f_RS,na.rm=T)
D_data_1.33$rel_f_prop_RS=D_data_1.33$f_prop_RS/mean(D_data_1.33$f_prop_RS,na.rm=T)
D_data_1.33$rel_f_cMS=D_data_1.33$f_cMS/mean(D_data_1.33$f_cMS,na.rm=T)
D_data_1.33$rel_f_fec_pMate=D_data_1.33$f_fec_pMate/mean(D_data_1.33$f_fec_pMate,na.rm=T)

### Reduce treatments to arena and population size ####
# Arena size
D_data_Large_arena=rbind(D_data_0.26,D_data_0.52)
D_data_Small_arena=rbind(D_data_0.67,D_data_1.33)

# Population size
D_data_Small_pop=rbind(D_data_0.26,D_data_0.67)
D_data_Large_pop=rbind(D_data_0.52,D_data_1.33)

## Set figure schemes ####
# Set color-sets for figures
colpal=brewer.pal(4, 'Dark2')
colpal2=c("#b2182b","#2166AC")
colpal3=brewer.pal(4, 'Paired')

# Set theme for ggplot2 figures
fig_theme=theme(panel.border = element_blank(),
                plot.margin = margin(0,2.2,0,0.2,"cm"),
                plot.title = element_text(hjust = 0.5),
                panel.background = element_blank(),
                legend.key=element_blank(),
                panel.grid.major = element_blank(),
                panel.grid.minor = element_blank(), 
                legend.position = c(1.25, 0.8),
                plot.tag.position=c(0.01,0.98),
                legend.title = element_blank(),
                legend.text = element_text(colour="black", size=10),
                axis.line.x = element_line(colour = "black", size = 1),
                axis.line.y = element_line(colour = "black", size = 1),
                axis.text.x = element_text(face="plain", color="black", size=16, angle=0),
                axis.text.y = element_text(face="plain", color="black", size=16, angle=0),
                axis.title.x = element_text(size=16,face="plain", margin = margin(r=0,10,0,0)),
                axis.title.y = element_text(size=16,face="plain", margin = margin(r=10,0,0,0)),
                axis.ticks = element_line(size = 1),
                axis.ticks.length = unit(.3, "cm"))

## Create customized functions for analysis ####
# Create function to calculate standard error and upper/lower standard deviation
standard_error <- function(x) sd(x,na.rm=T) / sqrt(length(!is.na(x)))
upper_SD <- function(x) mean(x,na.rm=T)+(sd(x)/2)
lower_SD <- function(x) mean(x,na.rm=T)-(sd(x)/2)

We bootstrapped the total opportunity for sexual selection (ITS) for males.

## Bootstrapping total sexual selection on males ####

# Large arena size
D_data_Large_arena_M_totalSexSel <-as.data.table(cbind(D_data_Large_arena$rel_m_cMS,D_data_Large_arena$rel_m_PS))
c <- function(d, i){
  d2 <- d[i,]
  return(var(d2[,1], na.rm=TRUE)+var(d2[,2], na.rm=TRUE)+2*cov(d2[,1],d2[,2],use='pairwise.complete.obs'))
}
Large_arena_M__totalSexSel_bootvar <- boot(D_data_Large_arena_M_totalSexSel, c, R=10000)

# Small arena size
D_data_Small_arena_M_totalSexSel <-as.data.table(cbind(D_data_Small_arena$rel_m_cMS,D_data_Small_arena$rel_m_PS))

Small_arena_M__totalSexSel_bootvar <- boot(D_data_Small_arena_M_totalSexSel, c, R=10000)

# Large population size
D_data_Large_pop_M_totalSexSel <-as.data.table(cbind(D_data_Large_pop$rel_m_cMS,D_data_Large_pop$rel_m_PS))

Large_pop_M__totalSexSel_bootvar <- boot(D_data_Large_pop_M_totalSexSel, c, R=10000)

# Small population size
D_data_Small_pop_M_totalSexSel <-as.data.table(cbind(D_data_Small_pop$rel_m_cMS,D_data_Small_pop$rel_m_PS))

Small_pop_M__totalSexSel_bootvar <- boot(D_data_Small_pop_M_totalSexSel, c, R=10000)
rm(c)

### Extract data and write results table ####
PhenVarBoot_Table_Male_Large_arena_totalSexSel <- as.data.frame(cbind("Total sexual selection", "Large arena size", mean(Large_arena_M__totalSexSel_bootvar$t), quantile(Large_arena_M__totalSexSel_bootvar$t,.025, names = FALSE), quantile(Large_arena_M__totalSexSel_bootvar$t,.975, names = FALSE)))
PhenVarBoot_Table_Male_Small_arena_totalSexSel <- as.data.frame(cbind("Total sexual selection", "Small arena size", mean(Small_arena_M__totalSexSel_bootvar$t), quantile(Small_arena_M__totalSexSel_bootvar$t,.025, names = FALSE), quantile(Small_arena_M__totalSexSel_bootvar$t,.975, names = FALSE)))
PhenVarBoot_Table_Male_Large_pop_totalSexSel <- as.data.frame(cbind("Total sexual selection", "Large population size", mean(Large_pop_M__totalSexSel_bootvar$t), quantile(Large_pop_M__totalSexSel_bootvar$t,.025, names = FALSE), quantile(Large_pop_M__totalSexSel_bootvar$t,.975, names = FALSE)))
PhenVarBoot_Table_Male_Small_pop_totalSexSel <- as.data.frame(cbind("Total sexual selection", "Small population size", mean(Small_pop_M__totalSexSel_bootvar$t), quantile(Small_pop_M__totalSexSel_bootvar$t,.025, names = FALSE), quantile(Small_pop_M__totalSexSel_bootvar$t,.975, names = FALSE)))


totalSexSel_Table <- as.data.frame(as.matrix(rbind(PhenVarBoot_Table_Male_Large_arena_totalSexSel,PhenVarBoot_Table_Male_Small_arena_totalSexSel,
                                                   PhenVarBoot_Table_Male_Large_pop_totalSexSel,PhenVarBoot_Table_Male_Small_pop_totalSexSel)))

is.table(totalSexSel_Table)
colnames(totalSexSel_Table)[1] <- "Variance_component"
colnames(totalSexSel_Table)[2] <- "Treatment"
colnames(totalSexSel_Table)[3] <- "Variance"
colnames(totalSexSel_Table)[4] <- "l95_CI"
colnames(totalSexSel_Table)[5] <- "u95_CI"
totalSexSel_Table[,3]=round(as.numeric(totalSexSel_Table[,3]),digits=2)
totalSexSel_Table[,4]=round(as.numeric(totalSexSel_Table[,4]),digits=2)
totalSexSel_Table[,5]=round(as.numeric(totalSexSel_Table[,5]),digits=2)
rownames(totalSexSel_Table) <- c()

Table A7: Total opportunity for sexual selection (ITS) for males including 95% confidence intervals.

kable(totalSexSel_Table)
Variance_component Treatment Variance l95_CI u95_CI
Total sexual selection Large arena size 0.38 0.23 0.56
Total sexual selection Small arena size 0.37 0.22 0.56
Total sexual selection Large population size 0.45 0.27 0.65
Total sexual selection Small population size 0.29 0.16 0.44

Permutation test for treatment comparisons

Next, we used permutation tests to compare the total opportunity for sexual selection between the treatments.

## Permutation test for treatment comparisons ####

# Arena size
Treat_diff_Male_arena_totalSexSel=cbind(Small_arena_M__totalSexSel_bootvar$t)-cbind(Large_arena_M__totalSexSel_bootvar$t)

t_Treat_diff_Male_arena_totalSexSel=mean(Treat_diff_Male_arena_totalSexSel,na.rm=TRUE)
t_Treat_diff_Male_arena_totalSexSel_lower=quantile(Treat_diff_Male_arena_totalSexSel,.025,na.rm=TRUE)
t_Treat_diff_Male_arena_totalSexSel_upper=quantile(Treat_diff_Male_arena_totalSexSel,.975,na.rm=TRUE)

# Permutation test to calculate p value
comb_data_MS=c(D_data_Large_arena$rel_m_cMS,D_data_Small_arena$rel_m_cMS)
comb_data_PS=c(D_data_Large_arena$rel_m_PS,D_data_Small_arena$rel_m_PS)

diff.observed = (var(na.omit((D_data_Small_arena$rel_m_cMS)))-var(na.omit((D_data_Large_arena$rel_m_cMS))))+ 
  (var(na.omit((D_data_Small_arena$rel_m_PS)))-var(na.omit((D_data_Large_arena$rel_m_PS))))+
  2*cov(((D_data_Small_arena$rel_m_cMS)),((D_data_Small_arena$rel_m_PS)), use = 'pairwise.complete.obs')-2*cov(((D_data_Large_arena$rel_m_cMS)),((D_data_Large_arena$rel_m_PS)), use = 'pairwise.complete.obs')


number_of_permutations = 100000
diff.random = NULL
for (i in 1 : number_of_permutations) {
  
  # Sample from the combined dataset
  a.random = sample (na.omit(comb_data_MS), length(c(D_data_Large_arena$rel_m_cMS)), TRUE)
  b.random = sample (na.omit(comb_data_MS), length(c(D_data_Small_arena$rel_m_cMS)), TRUE)
  c.random = sample (na.omit(comb_data_PS), length(c(D_data_Large_arena$rel_m_PS)), TRUE)
  d.random = sample (na.omit(comb_data_PS), length(c(D_data_Small_arena$rel_m_PS)), TRUE) 
  
  # Null (permuated) difference
  diff.random[i] = (var(na.omit((b.random)))-var(na.omit((a.random))))+ 
    (var(na.omit((d.random)))-var(na.omit((c.random))))+
    2*cov(((b.random)),((d.random)), use = 'pairwise.complete.obs')-2*cov(((a.random)),((c.random)), use = 'pairwise.complete.obs')
  
}

# P-value is the fraction of how many times the permuted difference is equal or more extreme than the observed difference

t_Treat_diff_Male_arena_totalSexSel_p = sum(abs(diff.random) >= as.numeric(abs(diff.observed)))/   number_of_permutations

# Group size
Treat_diff_Male_pop_totalSexSel=cbind(Large_pop_M__totalSexSel_bootvar$t)-cbind(Small_pop_M__totalSexSel_bootvar$t)

t_Treat_diff_Male_pop_totalSexSel=mean(Treat_diff_Male_pop_totalSexSel,na.rm=TRUE)
t_Treat_diff_Male_pop_totalSexSel_lower=quantile(Treat_diff_Male_pop_totalSexSel,.025,na.rm=TRUE)
t_Treat_diff_Male_pop_totalSexSel_upper=quantile(Treat_diff_Male_pop_totalSexSel,.975,na.rm=TRUE)

# Permutation test to calculate p value
comb_data_MS=c(D_data_Large_pop$rel_m_cMS,D_data_Small_pop$rel_m_cMS)
comb_data_PS=c(D_data_Large_pop$rel_m_InSuc,D_data_Small_pop$rel_m_PS)

diff.observed = (var(na.omit((D_data_Large_pop$rel_m_cMS)))-var(na.omit((D_data_Small_pop$rel_m_cMS))))+ 
  (var(na.omit((D_data_Large_pop$rel_m_PS)))-var(na.omit((D_data_Small_pop$rel_m_PS))))+
  2*cov(((D_data_Large_pop$rel_m_cMS)),((D_data_Large_pop$rel_m_PS)), use = 'pairwise.complete.obs')-2*cov(((D_data_Small_pop$rel_m_cMS)),((D_data_Small_pop$rel_m_PS)), use = 'pairwise.complete.obs')

number_of_permutations = 100000
diff.random = NULL
for (i in 1 : number_of_permutations) {
  
  # Sample from the combined dataset
  a.random = sample (na.omit(comb_data_MS), length(c(D_data_Large_pop$rel_m_cMS)), TRUE)
  b.random = sample (na.omit(comb_data_MS), length(c(D_data_Small_pop$rel_m_cMS)), TRUE)
  c.random = sample (na.omit(comb_data_PS), length(c(D_data_Large_pop$rel_m_PS)), TRUE)
  d.random = sample (na.omit(comb_data_PS), length(c(D_data_Small_pop$rel_m_PS)), TRUE) 
  
  # Null (permuated) difference
  diff.random[i] =  var(na.omit(a.random))-var(na.omit(b.random))
  
  diff.random[i] = (var(na.omit((a.random)))-var(na.omit((b.random))))+ 
    (var(na.omit((c.random)))-var(na.omit((d.random))))+
    2*cov(((a.random)),((c.random)), use = 'pairwise.complete.obs')-2*cov(((b.random)),((d.random)), use = 'pairwise.complete.obs')
  
}

# P-value is the fraction of how many times the permuted difference is equal or more extreme than the observed difference

t_Treat_diff_Male_pop_totalSexSel_p = sum(abs(diff.random) >= as.numeric(abs(diff.observed)))/   number_of_permutations

### Extract data and write results table ####
CompTreat_Table_Male_arena_totalSexSel <- as.data.frame(cbind("Arena size", "Total sexual selection", t_Treat_diff_Male_arena_totalSexSel, t_Treat_diff_Male_arena_totalSexSel_lower, t_Treat_diff_Male_arena_totalSexSel_upper, t_Treat_diff_Male_arena_totalSexSel_p))
names(CompTreat_Table_Male_arena_totalSexSel)=c('V1','V2','V3','V4','V5','V6')
CompTreat_Table_Male_pop_totalSexSel <- as.data.frame(cbind("Group size", "Total sexual selection", t_Treat_diff_Male_pop_totalSexSel, t_Treat_diff_Male_pop_totalSexSel_lower, t_Treat_diff_Male_pop_totalSexSel_upper, t_Treat_diff_Male_pop_totalSexSel_p))
names(CompTreat_Table_Male_pop_totalSexSel)=c('V1','V2','V3','V4','V5','V6')

Table_totalSexSel_TreatComp <- as.data.frame(as.matrix(rbind(CompTreat_Table_Male_arena_totalSexSel,CompTreat_Table_Male_pop_totalSexSel)))

colnames(Table_totalSexSel_TreatComp)[1] <- "Treatment"
colnames(Table_totalSexSel_TreatComp)[2] <- "Variance_component"
colnames(Table_totalSexSel_TreatComp)[3] <- "Variance"
colnames(Table_totalSexSel_TreatComp)[4] <- "l95_CI"
colnames(Table_totalSexSel_TreatComp)[5] <- "u95_CI"
colnames(Table_totalSexSel_TreatComp)[6] <- "p-value"
Table_totalSexSel_TreatComp[,3]=round(as.numeric(Table_totalSexSel_TreatComp[,3]),digits=2)
Table_totalSexSel_TreatComp[,4]=round(as.numeric(Table_totalSexSel_TreatComp[,4]),digits=2)
Table_totalSexSel_TreatComp[,5]=round(as.numeric(Table_totalSexSel_TreatComp[,5]),digits=2)
Table_totalSexSel_TreatComp[,6]=round(as.numeric(Table_totalSexSel_TreatComp[,6]),digits=3)
rownames(Table_totalSexSel_TreatComp) <- c()

Table A8: Treatment difference in the total opportunity for sexual selection (ITS) for males including 95% confidence intervals. Negative effect sizes indicate larger values at lower density and positive effect sizes larger values at higher density.

kable(totalSexSel_Table)
Variance_component Treatment Variance l95_CI u95_CI
Total sexual selection Large arena size 0.38 0.23 0.56
Total sexual selection Small arena size 0.37 0.22 0.56
Total sexual selection Large population size 0.45 0.27 0.65
Total sexual selection Small population size 0.29 0.16 0.44

Plot: total sexual selection on males (Figure S9)

Finally, we plotted the total opportunity for sexual selection for each treatment.

### Plot: total sexual selection on males (Figure S9) ####
# Reorder data
plot_totalSexSel_data_1=totalSexSel_Table[c(1,4),]
names(plot_totalSexSel_data_1)[3] <- "Variance_low"
names(plot_totalSexSel_data_1)[4] <- "lCI_low"
names(plot_totalSexSel_data_1)[5] <- "uCI_low"
plot_totalSexSel_data_2=totalSexSel_Table[c(2,3),c(3,4,5)]
names(plot_totalSexSel_data_2)[1] <- "Variance_high"
names(plot_totalSexSel_data_2)[2] <- "lCI_high"
names(plot_totalSexSel_data_2)[3] <- "uCI_high"
plot_totalSexSel_data=cbind(plot_totalSexSel_data_1,plot_totalSexSel_data_2)
plot_totalSexSel_data[c(2),2]='Group size'
plot_totalSexSel_data[c(1),2]='Arena size'

ggplot(plot_totalSexSel_data, aes(x=Variance_low, y=Variance_high, shape=Treatment)) + geom_abline(intercept = 0, slope = 1,size=1,linetype=2) +
  annotate(geom = "polygon", x = c(Inf, -Inf, -Inf), y = c(Inf, -Inf, Inf), fill = "grey", alpha = 0.2 )+
  geom_point(alpha=1,size = 5,color=colpal2[2])+
  geom_errorbar(alpha=0.5,size=1.1,width=0,color=colpal2[2], orientation='y',aes(xmin=lCI_low, xmax=uCI_low)) +geom_errorbar(alpha=0.5,size=1.1,color=colpal2[2],width=0, orientation='x', aes(ymin=lCI_high, ymax=uCI_high))+
  ylab(expression(paste('High density total ',~italic("I"['TS']))))+labs(tag = "")+xlab(expression(paste('Low density total ',~italic("I"['TS']))))+
  scale_shape_manual(values=c(15, 19))+
  guides(shape = guide_legend(override.aes = list(size = 3.5)))+
  xlim(0.1,0.7)+ylim(0.1,0.7)+
  guides(shape = guide_legend(override.aes = list(size = 5)))+
  fig_theme+theme(legend.position = c(1, 0.8))
Figure S9: Total opportunity for sexual selection (ITS) in males for group and arena size treatment. Mean and 95%CI estimated via bootstrapping. Dashed lines mark equal effect size for both densities. In grey area metrics were larger under high density treatments. The x-/y-distance of means from dashed line is equal to the effect size of the treatment.

Figure S9: Total opportunity for sexual selection (ITS) in males for group and arena size treatment. Mean and 95%CI estimated via bootstrapping. Dashed lines mark equal effect size for both densities. In grey area metrics were larger under high density treatments. The x-/y-distance of means from dashed line is equal to the effect size of the treatment. 


sessionInfo()
R version 4.2.0 (2022-04-22 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19045)

Matrix products: default

locale:
[1] LC_COLLATE=German_Germany.utf8  LC_CTYPE=German_Germany.utf8   
[3] LC_MONETARY=German_Germany.utf8 LC_NUMERIC=C                   
[5] LC_TIME=German_Germany.utf8    

attached base packages:
[1] grid      stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
 [1] knitr_1.42         ICC_2.4.0          data.table_1.14.8  boot_1.3-28       
 [5] RColorBrewer_1.1-3 car_3.1-1          carData_3.0-5      gridGraphics_0.5-1
 [9] cowplot_1.1.1      EnvStats_2.7.0     dplyr_1.1.0        readr_2.1.4       
[13] lmerTest_3.1-3     lme4_1.1-31        Matrix_1.5-3       gridExtra_2.3     
[17] ggplot2_3.4.1      ggeffects_1.2.0   

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.10         lattice_0.20-45     rprojroot_2.0.3    
 [4] digest_0.6.31       utf8_1.2.3          R6_2.5.1           
 [7] evaluate_0.20       highr_0.10          pillar_1.8.1       
[10] rlang_1.0.6         rstudioapi_0.14     minqa_1.2.5        
[13] whisker_0.4.1       jquerylib_0.1.4     nloptr_2.0.3       
[16] rmarkdown_2.20      labeling_0.4.2      splines_4.2.0      
[19] stringr_1.5.0       bit_4.0.5           munsell_0.5.0      
[22] compiler_4.2.0      numDeriv_2016.8-1.1 httpuv_1.6.9       
[25] xfun_0.37           pkgconfig_2.0.3     htmltools_0.5.4    
[28] tidyselect_1.2.0    tibble_3.2.0        workflowr_1.7.0    
[31] fansi_1.0.4         crayon_1.5.2        tzdb_0.3.0         
[34] withr_2.5.0         later_1.3.0         MASS_7.3-56        
[37] nlme_3.1-157        jsonlite_1.8.4      gtable_0.3.1       
[40] lifecycle_1.0.3     git2r_0.31.0        magrittr_2.0.3     
[43] scales_1.2.1        vroom_1.6.1         cli_3.6.1          
[46] stringi_1.7.12      cachem_1.0.7        farver_2.1.1       
[49] fs_1.6.1            promises_1.2.0.1    bslib_0.4.2        
[52] ellipsis_0.3.2      generics_0.1.3      vctrs_0.5.2        
[55] tools_4.2.0         bit64_4.0.5         glue_1.6.2         
[58] hms_1.1.2           parallel_4.2.0      abind_1.4-5        
[61] fastmap_1.1.1       yaml_2.3.7          colorspace_2.1-0   
[64] sass_0.4.5