Last updated: 2019-04-09

Checks: 6 0

Knit directory: rrresearch/

This reproducible R Markdown analysis was created with workflowr (version 1.2.0). The Report tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.


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Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    analysis/.DS_Store
    Ignored:    analysis/assets/
    Ignored:    assets/
    Ignored:    data/metadata/
    Ignored:    data/raw/
    Ignored:    demos/demo-rmd-0_files/
    Ignored:    demos/demo-rmd-1_files/
    Ignored:    demos/demo-rmd_files/
    Ignored:    docs/.DS_Store
    Ignored:    docs/assets/.DS_Store
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    Ignored:    docs/demo-rmd-1_files/
    Ignored:    docs/demo-rmd-2_files/
    Ignored:    docs/demo-rmd-3_files/
    Ignored:    docs/demo-rmd_files/
    Ignored:    docs/index-demo-pre_files/
    Ignored:    figure/
    Ignored:    install.R
    Ignored:    rmd/
    Ignored:    slides/libs/

Unstaged changes:
    Modified:   analysis/_site.yml
    Deleted:    analysis/license.Rmd
    Modified:   render-other.R

Staged changes:
    Modified:   analysis/_site.yml

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.


These are the previous versions of the R Markdown and HTML files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view them.

File Version Author Date Message
html 3339a89 Anna Krystalli 2019-04-09 update navbar in docs
html cd7663f Anna Krystalli 2019-04-09 update site yml
Rmd c534ba5 Anna Krystalli 2019-04-09 add packagking materials
html 74ffa63 Anna Krystalli 2019-04-09 commit site

[1] "Hello, world!"

Testing

create test file

To create a new test file (and the testing framework if required), use function usethis::use_test(). It’s good practice to name the test files after the .R files containing the functions being tested.

This just created the following folders and files

tests
├── testthat
│   └── test-hello.R
└── testthat.R

1 directory, 2 files

When the tests are run (either through running devtools::test(), clicking on More > Test Package in the Build panel or Cmd/Ctrl + Shift + T), the code in each test script in directory testthat is run.

It also added testthat to the suggested packages in the DESCRIPTION file.

Suggests: 
    testthat

That’s because you don’t need test that to run the functions in mypackage, but you do if you want to run the tests.

test-hello.R

Let’s load the library so we can explore the testthat testing framework

If the test doesn’t pass it throws an error

Error: Test failed: 'multiplication works'
* 2 * 2 not equal to 5.
1/1 mismatches
[1] 4 - 5 == -1

write tests

We’ll write tests to ensure that when our function is given a certain set of arguments as input, it generates output that we know to be correct

Let’s create something to test against.

The first thing to note, looking at the say() documentation is that it takes an argument type which allows us to specify the output we want. It defaults message which means the output of the function is returned as a message.

We can therefore use testthat::expect_message()

Colors cannot be applied in this environment :( Try using a terminal or RStudio.
"\n\n ----- \nHello world from Anna! \n ------ \n    \\   \n     \\\n   __\n   / \\\n   | |\n   @ @\n  || ||\n  || ||\n  |\\_/|\n  \\___/ GB\n"


R version 3.5.2 (2018-12-20)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Mojave 10.14.3

Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib

locale:
[1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] testthat_2.0.1

loaded via a namespace (and not attached):
 [1] rmsfact_0.0.3     workflowr_1.2.0   Rcpp_1.0.1       
 [4] crayon_1.3.4      digest_0.6.18     rprojroot_1.3-2  
 [7] R6_2.4.0          backports_1.1.3   git2r_0.24.0.9001
[10] magrittr_1.5      evaluate_0.13     rlang_0.3.1      
[13] stringi_1.3.1     fs_1.2.7          whisker_0.3-2    
[16] cowsay_0.7.0      fortunes_1.5-4    rmarkdown_1.12   
[19] tools_3.5.2       stringr_1.4.0     glue_1.3.1       
[22] xfun_0.5          yaml_2.2.0        compiler_3.5.2   
[25] htmltools_0.3.6   knitr_1.22