Packaging functionality
Last updated: 2019-04-09
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Knit directory: rrresearch/
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| File | Version | Author | Date | Message |
|---|---|---|---|---|
| html | 3339a89 | Anna Krystalli | 2019-04-09 | update navbar in docs |
| html | cd7663f | Anna Krystalli | 2019-04-09 | update site yml |
| Rmd | c534ba5 | Anna Krystalli | 2019-04-09 | add packagking materials |
| html | 74ffa63 | Anna Krystalli | 2019-04-09 | commit site |
# Hello, world!
#
# This is an example function named 'hello'
# which prints 'Hello, world!'.
#
# You can learn more about package authoring with RStudio at:
#
# http://r-pkgs.had.co.nz/
#
# Some useful keyboard shortcuts for package authoring:
#
# Build and Reload Package: 'Cmd + Shift + B'
# Check Package: 'Cmd + Shift + E'
# Test Package: 'Cmd + Shift + T'
hello <- function() {
print("Hello, world!")
}[1] "Hello, world!"Roxygen documetation
Used to control namespace and document functions
First delete automatically generated NAMESPACE & man
#' Hello World!
#'
#' Print hello greeting
#' @return prints hello greeting to console
#' @export
#'
#' @examples
#' hello()
hello <- function() {
print("Hello, world!")
}#' Hello World!
#'
#' Print hello greeting
#' @return prints hello greeting to console from me
#' @export
#'
#' @examples
#' hello()
hello <- function() {
print("Hello, world from Anna")
}
hello()[1] "Hello, world from Anna"#' Hello World!
#'
#' Print personalised hello greeting from me.
#'
#' @param name character string. Your name!
#' @param ... additional arguments passed to `cowsay::say()`
#'
#' @return prints hello greeting to console
#' @export
#'
#' @examples
#' hello()
#' hello("Lucy Elen")
hello <- function(name = NULL, ...) {
if(is.null(name)){name <- "world"}
greeting <- paste("Hello", name, "from Anna!")
animal_names <- names(cowsay::animals)
i <- sample(1:length(animal_names), 1)
cowsay::say(greeting, animal_names[i], ...)
}Testing
create test file
To create a new test file (and the testing framework if required), use function usethis::use_test(). It’s good practice to name the test files after the .R files containing the functions being tested.
✔ Setting active project to '/Users/Anna/Documents/workflows/workshops/materials/mypackage'
✔ Adding 'testthat' to Suggests field in DESCRIPTION
✔ Creating 'tests/testthat/'
✔ Writing 'tests/testthat.R'
✔ Writing 'tests/testthat/test-hello.R'
● Modify 'tests/testthat/test-hello.R'This just created the following folders and files
tests
├── testthat
│ └── test-hello.R
└── testthat.R
1 directory, 2 filesWhen the tests are run (either through running devtools::test(), clicking on More > Test Package in the Build panel or Cmd/Ctrl + Shift + T), the code in each test script in directory testthat is run.
It also added testthat to the suggested packages in the DESCRIPTION file.
Suggests:
testthatThat’s because you don’t need test that to run the functions in mypackage, but you do if you want to run the tests.
test-hello.R
Let’s load the library so we can explore the testthat testing framework
If the test doesn’t pass it throws an error
Error: Test failed: 'multiplication works'
* 2 * 2 not equal to 5.
1/1 mismatches
[1] 4 - 5 == -1write tests
We’ll write tests to ensure that when our function is given a certain set of arguments as input, it generates output that we know to be correct
Let’s create something to test against.
The first thing to note, looking at the say() documentation is that it takes an argument type which allows us to specify the output we want. It defaults message which means the output of the function is returned as a message.
We can therefore use testthat::expect_message()
Colors cannot be applied in this environment :( Try using a terminal or RStudio."\n\n ----- \nHello world from Anna! \n ------ \n \\ \n \\\n __\n / \\\n | |\n @ @\n || ||\n || ||\n |\\_/|\n \\___/ GB\n"
R version 3.5.2 (2018-12-20)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Mojave 10.14.3
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib
locale:
[1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] testthat_2.0.1
loaded via a namespace (and not attached):
[1] rmsfact_0.0.3 workflowr_1.2.0 Rcpp_1.0.1
[4] crayon_1.3.4 digest_0.6.18 rprojroot_1.3-2
[7] R6_2.4.0 backports_1.1.3 git2r_0.24.0.9001
[10] magrittr_1.5 evaluate_0.13 rlang_0.3.1
[13] stringi_1.3.1 fs_1.2.7 whisker_0.3-2
[16] cowsay_0.7.0 fortunes_1.5-4 rmarkdown_1.12
[19] tools_3.5.2 stringr_1.4.0 glue_1.3.1
[22] xfun_0.5 yaml_2.2.0 compiler_3.5.2
[25] htmltools_0.3.6 knitr_1.22