Last updated: 2020-07-20
Checks: 7 0
This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.
Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.
Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.
set.seed(20200714) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.
Great job! Recording the operating system, R version, and package versions is critical for reproducibility.
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Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.
The results in this page were generated with repository version ff54d1d. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.
Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use
wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:
Ignored files: Ignored: .DS_Store Ignored: .Rhistory Ignored: .Rproj.user/ Unstaged changes: Modified: analysis/style.css Staged changes: Modified: analysis/_site.yml New: analysis/style.css
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
These are the previous versions of the repository in which changes were made to the R Markdown (
analysis/index.Rmd) and HTML (
docs/index.html) files. If you’ve configured a remote Git repository (see
?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.
|Rmd||7bd8ff7||Damon Bayer||2020-07-20||Y Axis Labels|
|Rmd||77cc6b0||Damon Bayer||2020-07-20||Fix Stay at Home text position|
|html||77cc6b0||Damon Bayer||2020-07-20||Fix Stay at Home text position|
|html||5369804||Damon Bayer||2020-07-19||Update 2020-07-19|
|Rmd||32aeff8||Damon Bayer||2020-07-17||Orange County is Orange|
|html||32aeff8||Damon Bayer||2020-07-17||Orange County is Orange|
|Rmd||bc97c2a||Damon Bayer||2020-07-17||Changes from plot feedback|
|html||bc97c2a||Damon Bayer||2020-07-17||Changes from plot feedback|
|Rmd||02dbf86||Damon Bayer||2020-07-17||New Data + ICU Occupancy|
|html||02dbf86||Damon Bayer||2020-07-17||New Data + ICU Occupancy|
|html||65c7195||Damon Bayer||2020-07-16||theme change|
|html||cc4c194||Damon Bayer||2020-07-16||First Draft|
|Rmd||68a123b||Damon Bayer||2020-07-16||workflowr::wflow_git_commit(all = T)|
|Rmd||de88c5a||Damon Bayer||2020-07-16||workflowr::wflow_git_commit(all = T)|
|html||de88c5a||Damon Bayer||2020-07-16||workflowr::wflow_git_commit(all = T)|
|html||6b4b352||Damon Bayer||2020-07-14||Build site.|
|Rmd||66110a1||Damon Bayer||2020-07-14||Initial Proof of Concept|
|html||66110a1||Damon Bayer||2020-07-14||Initial Proof of Concept|
|Rmd||6151dc8||Damon Bayer||2020-07-14||Start workflowr project.|
Data collected from the California Open Data Portal.
Last updated 2020-07-20.
R version 4.0.2 (2020-06-22) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Catalina 10.15.5 Matrix products: default BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib LAPACK: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib locale:  en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages:  stats graphics grDevices utils datasets methods base other attached packages:  ckanr_0.4.0 DBI_1.1.0 patchwork_1.0.1 glue_1.4.1  TTR_0.23-6 scales_1.1.1 lubridate_1.7.9 forcats_0.5.0  stringr_1.4.0 dplyr_1.0.0 purrr_0.3.4 readr_1.3.1  tidyr_1.1.0 tibble_3.0.3 ggplot2_3.3.2 tidyverse_1.3.0  workflowr_1.6.2 loaded via a namespace (and not attached):  Rcpp_1.0.5 lattice_0.20-41 zoo_1.8-8 assertthat_0.2.1  rprojroot_1.3-2 digest_0.6.25 R6_2.4.1 cellranger_1.1.0  backports_1.1.8 reprex_0.3.0 evaluate_0.14 httr_1.4.1  pillar_1.4.6 rlang_0.4.7 curl_4.3 readxl_1.3.1  rstudioapi_0.11 whisker_0.4 blob_1.2.1 rmarkdown_2.3  labeling_0.3 munsell_0.5.0 broom_0.7.0 compiler_4.0.2  httpuv_1.5.4 modelr_0.1.8 xfun_0.15 pkgconfig_2.0.3  htmltools_0.5.0 tidyselect_1.1.0 fansi_0.4.1 crayon_1.3.4  dbplyr_1.4.4 withr_2.2.0 later_18.104.22.168 grid_4.0.2  jsonlite_1.7.0 gtable_0.3.0 lifecycle_0.2.0 git2r_0.27.1  magrittr_1.5 cli_2.0.2 stringi_1.4.6 farver_2.0.3  fs_1.4.2 promises_1.1.1 xml2_1.3.2 ellipsis_0.3.1  xts_0.12-0 generics_0.0.2 vctrs_0.3.1 tools_4.0.2  hms_0.5.3 yaml_2.2.1 colorspace_1.4-1 rvest_0.3.5  knitr_1.29 haven_2.3.1