Last updated: 2021-06-22
Checks: 2 0
Knit directory: muse/
This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.
Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.
Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.
The results in this page were generated with repository version 8ae8e21. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.
Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:
Ignored files:
Ignored: .Rhistory
Ignored: .Rproj.user/
Unstaged changes:
Modified: muse.Rproj
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.
| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | 8ae8e21 | Dave Tang | 2021-06-22 | Post on splitting a single column of annotations |
| html | 1cd1577 | davetang | 2021-01-27 | Build site. |
| Rmd | 687a6ca | davetang | 2021-01-27 | Gene Ontology Enrichment Analysis |
| html | 6ef7a62 | davetang | 2020-12-01 | Build site. |
| Rmd | acb1733 | davetang | 2020-12-01 | Read GTF files into R |
| html | e8c8661 | davetang | 2020-11-15 | Build site. |
| Rmd | ab3533f | davetang | 2020-11-15 | Fix link |
| html | 5dc50c6 | davetang | 2020-11-15 | Build site. |
| Rmd | 9639627 | davetang | 2020-11-15 | Complex UpSet plots |
| html | 2db13ea | davetang | 2020-11-10 | Build site. |
| Rmd | 268312f | davetang | 2020-11-10 | wflow_publish(files = c(“analysis/index.Rmd”, “analysis/google_trends.Rmd”, |
| html | 03f05e8 | davetang | 2020-10-18 | Build site. |
| Rmd | f79342a | davetang | 2020-10-18 | Markov chain post |
| html | 586b91f | Dave Tang | 2020-07-12 | Build site. |
| Rmd | b1d6edd | Dave Tang | 2020-07-12 | pheatmap |
| Rmd | b3f3dc1 | Dave Tang | 2020-07-12 | Start workflowr project. |
I refer to my blog often to look up notes and code I have written. I will recreate my blog posts here, to make it easier to reuse and also maintain my code. Some posts only exist here and not on my blog, so there is no original hyperlink back to my blog.