Last updated: 2018-05-23

• R Markdown file: uncommitted changes The R Markdown file has unstaged changes. To know which version of the R Markdown file created these results, you’ll want to first commit it to the Git repo. If you’re still working on the analysis, you can ignore this warning. When you’re finished, you can run wflow_publish to commit the R Markdown file and build the HTML.

• Repository version: cc6353a

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility. The version displayed above was the version of the Git repository at the time these results were generated.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:

Ignored files:
Ignored:    .DS_Store
Ignored:    .Rhistory
Ignored:    .Rproj.user/
Ignored:    analysis/figure/
Ignored:    figure/.DS_Store
Ignored:    figure/ch02/.DS_Store

Untracked files:
Untracked:  _workflowr.yml

Unstaged changes:
Modified:   analysis/_site.yml
Modified:   analysis/ch01.Rmd
Modified:   analysis/ch02.Rmd
Modified:   analysis/ch03.Rmd
Modified:   analysis/ch04.Rmd
Deleted:    analysis/chunks.R
Modified:   analysis/index.Rmd


Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
Expand here to see past versions:
File Version Author Date Message
html 17de7de John Blischak 2018-01-11 Build site.
Rmd 93052d7 John Blischak 2018-01-11 Apply workflowr infrastructure. Committed files manually.

I’m John Blischak. I work with Matthew Stephens at the University of Chicago to develop software and lesson material to support reproducible research.

This reproducible R Markdown analysis was created with workflowr 1.0.1