Last updated: 2018-05-23

workflowr checks: (Click a bullet for more information)

• ✖ R Markdown file: uncommitted changes

  The R Markdown file has unstaged changes. To know which version of the R Markdown file created these results, you’ll want to first commit it to the Git repo. If you’re still working on the analysis, you can ignore this warning. When you’re finished, you can run wflow_publish to commit the R Markdown file and build the HTML.

• ✔ Repository version: cc6353a

  Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility. The version displayed above was the version of the Git repository at the time these results were generated.
  
  Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:

  
  Ignored files:
      Ignored:    .DS_Store
      Ignored:    .Rhistory
      Ignored:    .Rproj.user/
      Ignored:    figure/.DS_Store
      Ignored:    figure/ch02/.DS_Store
  
  Untracked files:
      Untracked:  _workflowr.yml
  
  Unstaged changes:
      Modified:   analysis/_site.yml
      Modified:   analysis/about.Rmd
      Modified:   analysis/ch01.Rmd
      Modified:   analysis/ch02.Rmd
      Modified:   analysis/ch03.Rmd
      Modified:   analysis/ch04.Rmd
      Deleted:    analysis/chunks.R
      Modified:   analysis/index.Rmd
      Modified:   analysis/license.Rmd
  
  

  Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

Expand here to see past versions:

File	Version	Author	Date	Message
html	6209669	John Blischak	2018-02-16	Build site.
Rmd	221239f	John Blischak	2018-02-10	Add scaffolding for ch01 from index.
html	cf73f46	John Blischak	2018-01-26	Build site.
Rmd	d61faa9	John Blischak	2018-01-26	Add Chapter 02 analysis.
html	3bcf168	John Blischak	2018-01-12	Build site.
Rmd	20cdf3d	John Blischak	2018-01-12	Fix typo in links.
Rmd	6395f07	John Blischak	2018-01-11	Start organizing Ch 03
html	17de7de	John Blischak	2018-01-11	Build site.
Rmd	93052d7	John Blischak	2018-01-11	Apply workflowr infrastructure. Committed files manually.

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Lesson material for differential expression analysis with limma.

• Chapter 1
• Chapter 2
• Chapter 3
• Chapter 4

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This reproducible R Markdown analysis was created with workflowr 1.0.1

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