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Last updated: 2020-06-23
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Knit directory: PSYMETAB/
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Untracked files:
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These are the previous versions of the R Markdown and HTML files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view them.
| File | Version | Author | Date | Message |
|---|---|---|---|---|
| html | 46477dd | Jenny Sjaarda | 2019-12-06 | Build site. |
| Rmd | b503ef0 | Sjaarda Jennifer Lynn | 2019-12-06 | add more details to website |
| html | d1e539c | Jenny Sjaarda | 2019-12-06 | Build site. |
| Rmd | 487b5f5 | Sjaarda Jennifer Lynn | 2019-12-06 | update website, add qc description |
| html | 9f1ba5e | Jenny Sjaarda | 2019-12-06 | Build site. |
| Rmd | d480e35 | Jenny | 2019-12-04 | misc annotations |
| html | 12223b3 | Jenny Sjaarda | 2019-12-02 | Build site. |
| Rmd | dafe346 | Jenny | 2019-12-02 | modify index |
| Rmd | 0dd02a7 | Jenny | 2019-12-02 | modify website |
| html | 2849dcb | Jenny Sjaarda | 2019-12-02 | wflow_git_commit(all = T) |
| Rmd | 3d512c2 | Sjaarda Jennifer Lynn | 2019-12-02 | modify website and drake plans |
| Rmd | 8e743a8 | Sjaarda Jennifer Lynn | 2019-11-27 | drakeplan |
| html | 97b2b48 | Jenny | 2019-11-26 | Build site. |
| Rmd | 2db9bcf | Jenny | 2019-11-26 | wflow_publish(all = T) |
| html | 2db9bcf | Jenny | 2019-11-26 | wflow_publish(all = T) |
| html | 5fb939e | Jenny Sjaarda | 2019-11-26 | Build site. |
| Rmd | 7bae873 | Jenny Sjaarda | 2019-11-26 | Start workflowr project. |
This workflowr site contains all information and results about this research project.
Project details and overview can be found in the About page.
See Data sources for details on data origins. See Setup for details on setting up the analyses for this project.
Result shortcuts
- Overview of processing in genomestudio
- Genotype quality control and phenotype quality control
- Imputation report
- GWAS
Useful papers
Notes - Creating custom cluster files
Acknowledgements
This work has been supported by the Swiss National Science Foundation.
sessionInfo()R version 3.5.3 (2019-03-11)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
Matrix products: default
BLAS: /data/sgg2/jenny/bin/R-3.5.3/lib64/R/lib/libRblas.so
LAPACK: /data/sgg2/jenny/bin/R-3.5.3/lib64/R/lib/libRlapack.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] workflowr_1.6.0
loaded via a namespace (and not attached):
[1] Rcpp_1.0.3 rprojroot_1.3-2 packrat_0.5.0 digest_0.6.25
[5] later_1.0.0 R6_2.4.1 backports_1.1.6 git2r_0.26.1
[9] magrittr_1.5 evaluate_0.14 stringi_1.4.5 rlang_0.4.5
[13] fs_1.3.1 promises_1.1.0 whisker_0.4 rmarkdown_1.18
[17] tools_3.5.3 stringr_1.4.0 glue_1.4.0 yaml_2.2.0
[21] httpuv_1.5.2 xfun_0.11 compiler_3.5.3 htmltools_0.4.0
[25] knitr_1.26