Last updated: 2023-12-06
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Knit directory: bgc_argo_r_argodata/
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Load in OceanSODA surface pH and SST data
OceanSODA <-
tidync::hyper_tibble(paste(
path_updata,
"/OceanSODA_ETHZ-v2023.OCADS.01_1982-2022.nc",
sep = ""
))
OceanSODA <- OceanSODA %>%
mutate(date = as.Date(time, origin = '1982-01-15'),
year = year(date)) %>%
mutate(lon = if_else(lon < 20, lon + 360, lon)) %>%
mutate(
lat = cut(lat, seq(-90, 90, 1), seq(-89.5, 89.5, 1)),
lat = as.numeric(as.character(lat)),
lon = cut(lon, seq(20, 380, 1), seq(20.5, 379.5, 1)),
lon = as.numeric(as.character(lon))
) %>%
filter(year >= 1995)
OceanSODA_temp <- OceanSODA %>%
select(year, date, lon, lat, temperature)
OceanSODA_temp %>%
write_rds(file = paste0(path_argo_preprocessed, '/OceanSODA_temp.rds'))OceanSODA <- OceanSODA %>%
select(year, date, lat, lon, ph_total, ph_total_uncert)
OceanSODA %>%
write_rds(file = paste0(path_argo_preprocessed, '/OceanSODA.rds'))
sessionInfo()R version 4.2.2 (2022-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: openSUSE Leap 15.5
Matrix products: default
BLAS: /usr/local/R-4.2.2/lib64/R/lib/libRblas.so
LAPACK: /usr/local/R-4.2.2/lib64/R/lib/libRlapack.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] lubridate_1.9.0 timechange_0.1.1 forcats_0.5.2 stringr_1.5.0
[5] dplyr_1.1.3 purrr_1.0.2 readr_2.1.3 tidyr_1.3.0
[9] tibble_3.2.1 ggplot2_3.4.4 tidyverse_1.3.2
loaded via a namespace (and not attached):
[1] Rcpp_1.0.10 assertthat_0.2.1 rprojroot_2.0.3
[4] digest_0.6.30 utf8_1.2.2 R6_2.5.1
[7] cellranger_1.1.0 backports_1.4.1 reprex_2.0.2
[10] evaluate_0.18 httr_1.4.4 pillar_1.9.0
[13] rlang_1.1.1 googlesheets4_1.0.1 readxl_1.4.1
[16] ncmeta_0.3.5 rstudioapi_0.15.0 whisker_0.4
[19] jquerylib_0.1.4 rmarkdown_2.18 googledrive_2.0.0
[22] munsell_0.5.0 broom_1.0.5 compiler_4.2.2
[25] httpuv_1.6.6 modelr_0.1.10 xfun_0.35
[28] pkgconfig_2.0.3 htmltools_0.5.3 tidyselect_1.2.0
[31] workflowr_1.7.0 fansi_1.0.3 crayon_1.5.2
[34] withr_2.5.0 tzdb_0.3.0 dbplyr_2.2.1
[37] later_1.3.0 grid_4.2.2 jsonlite_1.8.3
[40] gtable_0.3.1 lifecycle_1.0.3 DBI_1.1.3
[43] git2r_0.30.1 magrittr_2.0.3 scales_1.2.1
[46] ncdf4_1.19 cli_3.6.1 stringi_1.7.8
[49] cachem_1.0.6 fs_1.5.2 promises_1.2.0.1
[52] xml2_1.3.3 bslib_0.4.1 ellipsis_0.3.2
[55] generics_0.1.3 vctrs_0.6.4 tools_4.2.2
[58] glue_1.6.2 RNetCDF_2.6-1 hms_1.1.2
[61] fastmap_1.1.0 yaml_2.3.6 colorspace_2.0-3
[64] gargle_1.2.1 rvest_1.0.3 knitr_1.41
[67] haven_2.5.1 tidync_0.3.0 sass_0.4.4