UCSD climatology
Roemmich and Gilson UCSD argo temperature climatology
Roemmich, D. and J. Gilson, 2009: The 2004-2008 mean and annual cycle
of temperature, salinity, and steric height in the global ocean from the
Argo Program. Progress in Oceanography, 82, 81-100
Read data
clim_argo_temp_year_mean <- tidync::hyper_tibble(paste0(path_argo_clim_temp, "/RG_ArgoClim_33pfit_2019_mean.nc"))
# yearly mean temperature values in each 1/6 lat/lon grid (1 value for the year)
clim_argo_temp_monthly_anomaly <- tidync::hyper_tibble(paste0(path_argo_clim_temp, "/RG_ArgoClim_33pfit_2019_annual.nc"))
# monthly temperature anomaly from the annual mean, from January (time = 0.5) to December (time = 11.5), in each 1/2 lon/lat grid
Harmonise data
# put both dataframes onto 1/1 lon/lat grid and calculate mean temperature / mean anomaly in each grid
clim_argo_temp_monthly_anomaly <- clim_argo_temp_monthly_anomaly %>%
select(-ARGO_SALINITY_ANNUAL_ANOMALY) %>%
rename(lon = LONGITUDE,
lat = LATITUDE,
pressure = PRESSURE,
temp_annual_anomaly = ARGO_TEMPERATURE_ANNUAL_ANOMALY,
time = TIME) %>%
mutate(lon = if_else(lon < 20, lon + 360, lon)) %>%
mutate(lat = cut(lat, seq(-90, 90, 1), seq(-89.5, 89.5, 1)),
lat = as.numeric(as.character(lat)),
lon = cut(lon, seq(20, 380, 1), seq(20.5, 379.5, 1)),
lon = as.numeric(as.character(lon))) %>%
mutate(depth = swDepth(pressure = pressure, latitude = lat),
.after = pressure) %>%
filter(lat < -30)
# calculate mean temperature anomaly in each 1x1 grid
clim_argo_temp_monthly_anomaly <- clim_argo_temp_monthly_anomaly %>%
group_by(lon, lat, depth, time) %>%
summarise(temp_monthly_anomaly = mean(temp_annual_anomaly, na.rm = TRUE)) %>%
ungroup()
# re-grid annual mean temperature to 1x1 grid and compute depth
clim_argo_temp_year_mean <- clim_argo_temp_year_mean %>%
select(-ARGO_SALINITY_MEAN) %>%
rename(lon = LONGITUDE,
lat = LATITUDE,
temp_annual_mean = ARGO_TEMPERATURE_MEAN,
pressure = PRESSURE) %>%
mutate(lon = if_else(lon < 20, lon + 360, lon)) %>%
mutate(lat = cut(lat, seq(-90, 90, 1), seq(-89.5, 89.5, 1)),
lat = as.numeric(as.character(lat)),
lon = cut(lon, seq(20, 380, 1), seq(20.5, 379.5, 1)),
lon = as.numeric(as.character(lon))) %>%
mutate(depth = swDepth(pressure = pressure, latitude = lat),
.after = pressure) %>%
filter(lat < -30)
# calculate mean yearly temperature in each lat/lon grid
clim_argo_temp_year_mean <- clim_argo_temp_year_mean %>%
group_by(lon, lat, depth) %>%
summarise(temp_annual_clim = mean(temp_annual_mean, na.rm = TRUE)) %>%
ungroup()
# check the compatability of the two depths in the two datasets
depth_year <- table(unique(round(clim_argo_temp_monthly_anomaly$depth, digits = 0)))
depth_month <- table(unique(round(clim_argo_temp_year_mean$depth, digits = 0)))
all.equal(depth_year, depth_month)
[1] TRUE
# same depth axis in both
rm(depth_year, depth_month)
clim_argo_temp_ucsd <- left_join(clim_argo_temp_monthly_anomaly,
clim_argo_temp_year_mean)
clim_argo_temp_ucsd <- clim_argo_temp_ucsd %>%
mutate(temp_monthly_clim = temp_annual_clim + temp_monthly_anomaly,
depth = round(depth, digits = 0),
month = time + 0.5)
rm(clim_argo_temp_monthly_anomaly, clim_argo_temp_year_mean)
Write data to file
clim_argo_temp_ucsd %>%
write_rds(file = paste0(path_argo_preprocessed, "/clim_argo_temp_ucsd.rds"))
Southern Ocean climatological SST
map+
geom_point(data = clim_argo_temp_ucsd %>%
filter(depth < 5),
aes(x = lon,
y = lat),
size = 0.2)+
facet_wrap(~time, ncol = 2)+
lims(y = c(-80, -30))+
labs(title = 'UCSD climatology obs coverage')
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clim_sst_ucsd <- clim_argo_temp_ucsd %>%
filter(depth <= 20) %>%
group_by(lon, lat, month) %>%
summarise(clim_sst = mean(temp_monthly_clim, na.rm = TRUE)) %>%
ungroup()
clim_sst_ucsd %>%
group_split(month) %>%
map(
~map+
geom_tile(data = .x,
aes(x = lon,
y = lat,
fill = clim_sst))+
scale_fill_viridis_c()+
lims(y = c(-85, -28))+
labs(title = paste0('Roemmich & Gilson UCSD clim SST, month:', unique(.x$month)))
)
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Southern Ocean January climatological temperature
clim_argo_temp_ucsd %>%
group_split(depth) %>%
map(
~map+
geom_tile(data = .x %>% filter(month == 1),
aes(x = lon,
y = lat,
fill = temp_monthly_clim))+
scale_fill_viridis_c()+
lims(y = c(-80, -29))+
labs(title = paste0('UCSD January climatological temperature ', unique(.x$depth), 'm'))
)
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Southern Ocean climatological profiles
# add in Mayot biome separations
clim_argo_temp_ucsd <- inner_join(clim_argo_temp_ucsd, nm_biomes)
# add in basin separations
clim_argo_temp_ucsd <- inner_join(clim_argo_temp_ucsd, basinmask)
# plot climatological profiles per month and biome
clim_argo_temp_ucsd %>%
group_split(month) %>%
map(
~ggplot(data = .x,
aes(x = temp_monthly_clim,
y = depth))+
geom_point(size = 0.1, pch = 1, fill = NA)+
scale_y_reverse()+
facet_grid(basin_AIP~biome_name)+
labs(title = paste0('UCSD clim profiles, month:', unique(.x$month)))
)
[[1]]
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CSIO-MNR vs UCSD climatology
boa_temp_clim_SO <- boa_temp_clim_SO %>%
rename(depth_boa = depth)
clim_argo_temp_ucsd <- clim_argo_temp_ucsd %>%
rename(depth_ucsd = depth)
boa_temp_clim_SO <- boa_temp_clim_SO %>%
mutate(depth = cut(depth_boa,
breaks = c(0, 10, 20, 30, 50, 70, 100, 200, 300, 400, 500, 600, 700, 800, 900, 1000, 1500, 2000),
include.lowest = TRUE,
labels = c(5, 15, 25, 40, 60, 85, 150, 250, 350, 450, 550, 650, 750, 850, 950, 1250, 1750)),
depth = as.numeric(as.character(depth)))
clim_argo_temp_ucsd <- clim_argo_temp_ucsd %>%
mutate(depth = cut(depth_ucsd,
breaks = c(0, 10, 20, 30, 50, 70, 100, 200, 300, 400, 500, 600, 700, 800, 900, 1000, 1500, 2000),
include.lowest = TRUE,
labels = c(5, 15, 25, 40, 60, 85, 150, 250, 350, 450, 550, 650, 750, 850, 950, 1250, 1750)),
depth = as.numeric(as.character(depth)))
# table(unique(boa_temp_clim_SO$depth))
# table(unique(clim_argo_temp_ucsd$depth))
temperature_climatology <- full_join(boa_temp_clim_SO, clim_argo_temp_ucsd)
temperature_climatology %>%
group_split(month, depth) %>%
map(
~ggplot(data = .x,
aes(x = clim_temp,
y = temp_monthly_clim))+
geom_bin2d(data = .x,
aes(x = clim_temp,
y = temp_monthly_clim))+
geom_abline(slope = 1, intercept = 0)+
scale_fill_viridis_c()+
facet_grid(biome_name ~ basin_AIP)+
labs(title = paste0('month: ', unique(.x$month), '| depth: ', unique(.x$depth), 'm'),
x = 'UCSD climatological temp',
y = 'CSIO-MNR climatological temp')
)
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2022-05-11
[[204]]
Past versions of plot_ucsd_vs_csio_clim-204.png
Version
Author
Date
bc9a34e
mlarriere
2024-04-12
c076fba
mlarriere
2024-04-12
710edd4
jens-daniel-mueller
2022-05-11
Session information
sessionInfo()
R version 4.2.2 (2022-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: openSUSE Leap 15.5
Matrix products: default
BLAS: /usr/local/R-4.2.2/lib64/R/lib/libRblas.so
LAPACK: /usr/local/R-4.2.2/lib64/R/lib/libRlapack.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] oce_1.7-10 gsw_1.1-1 forcats_0.5.2 stringr_1.5.0
[5] dplyr_1.1.3 purrr_1.0.2 readr_2.1.3 tidyr_1.3.0
[9] tibble_3.2.1 ggplot2_3.4.4 tidyverse_1.3.2 workflowr_1.7.0
loaded via a namespace (and not attached):
[1] httr_1.4.4 sass_0.4.4 viridisLite_0.4.1
[4] bit64_4.0.5 vroom_1.6.0 jsonlite_1.8.3
[7] modelr_0.1.10 bslib_0.4.1 assertthat_0.2.1
[10] getPass_0.2-2 highr_0.9 googlesheets4_1.0.1
[13] cellranger_1.1.0 yaml_2.3.6 pillar_1.9.0
[16] backports_1.4.1 glue_1.6.2 digest_0.6.30
[19] promises_1.2.0.1 rvest_1.0.3 colorspace_2.0-3
[22] htmltools_0.5.8.1 httpuv_1.6.6 pkgconfig_2.0.3
[25] broom_1.0.5 haven_2.5.1 scales_1.2.1
[28] processx_3.8.0 whisker_0.4 later_1.3.0
[31] tzdb_0.3.0 timechange_0.1.1 git2r_0.30.1
[34] googledrive_2.0.0 farver_2.1.1 generics_0.1.3
[37] ellipsis_0.3.2 cachem_1.0.6 withr_2.5.0
[40] cli_3.6.1 magrittr_2.0.3 crayon_1.5.2
[43] readxl_1.4.1 evaluate_0.18 ps_1.7.2
[46] ncdf4_1.19 fs_1.5.2 fansi_1.0.3
[49] xml2_1.3.3 tidync_0.3.0 tools_4.2.2
[52] hms_1.1.2 gargle_1.2.1 lifecycle_1.0.3
[55] munsell_0.5.0 reprex_2.0.2 callr_3.7.3
[58] compiler_4.2.2 jquerylib_0.1.4 RNetCDF_2.6-1
[61] rlang_1.1.1 grid_4.2.2 rstudioapi_0.15.0
[64] labeling_0.4.2 rmarkdown_2.18 gtable_0.3.1
[67] DBI_1.2.2 R6_2.5.1 ncmeta_0.3.5
[70] lubridate_1.9.0 knitr_1.41 fastmap_1.1.0
[73] bit_4.0.5 utf8_1.2.2 rprojroot_2.0.3
[76] stringi_1.7.8 parallel_4.2.2 Rcpp_1.0.10
[79] vctrs_0.6.4 dbplyr_2.2.1 tidyselect_1.2.0
[82] xfun_0.35