Last updated: 2021-03-08

Checks: 7 0

Knit directory: emlr_mod_v_XXX/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Environment: empty

Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.

Seed: set.seed(20200707)

The command set.seed(20200707) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.

Session information: recorded

Great job! Recording the operating system, R version, and package versions is critical for reproducibility.

Cache: none

Nice! There were no cached chunks for this analysis, so you can be confident that you successfully produced the results during this run.

File paths: relative

Great job! Using relative paths to the files within your workflowr project makes it easier to run your code on other machines.

Repository version: d709f6c

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version d709f6c. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/

Unstaged changes:
    Deleted:    a.png
    Modified:   data/auxillary/params_local.rds

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/mapping_predictor_preparation.Rmd) and HTML (docs/mapping_predictor_preparation.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
html	65b0cef	Donghe-Zhu	2021-03-07	Build site.
html	4083a6c	Donghe-Zhu	2021-03-07	Build site.
html	3fbbfa4	Donghe-Zhu	2021-03-07	Build site.
html	627c8fb	Donghe-Zhu	2021-03-07	Build site.
html	3607f4d	Donghe-Zhu	2021-03-07	Build site.
html	9ef3222	Donghe-Zhu	2021-03-05	Build site.
html	8c1e978	Donghe-Zhu	2021-03-05	Build site.
html	865f68c	Donghe-Zhu	2021-03-05	Build site.
html	ee69bc1	Donghe-Zhu	2021-03-05	Build site.
html	a79291f	Donghe-Zhu	2021-03-05	Build site.
html	e8c6f30	Donghe-Zhu	2021-03-04	Build site.
html	59288fe	Donghe-Zhu	2021-03-04	Build site.
html	731abc8	Donghe-Zhu	2021-03-04	Build site.
html	e2a5a33	Donghe-Zhu	2021-03-04	Build site.
html	c7892c1	Donghe-Zhu	2021-03-04	Build site.
html	924430b	Donghe-Zhu	2021-03-03	Build site.
html	0d0bca1	Donghe-Zhu	2021-03-03	Build site.
html	cb63c16	Donghe-Zhu	2021-03-03	Build site.
html	ffda45a	Donghe-Zhu	2021-03-03	Build site.
html	691ba81	Donghe-Zhu	2021-03-03	Build site.
html	c5e45a2	Donghe-Zhu	2021-03-03	Build site.
html	89c3e58	Donghe-Zhu	2021-03-03	Build site.
html	c407a50	Donghe-Zhu	2021-03-03	Build site.
html	c911669	Donghe-Zhu	2021-03-03	Build site.
html	b71c719	Donghe-Zhu	2021-03-01	Build site.
html	13666ca	Donghe-Zhu	2021-03-01	Build site.
html	c6e60fe	Donghe-Zhu	2021-03-01	Build site.
html	7a388f7	Donghe-Zhu	2021-03-01	Build site.
html	799e913	Donghe-Zhu	2021-03-01	Build site.
html	66ff99f	Donghe-Zhu	2021-03-01	Build site.
html	ac9bb7a	Donghe-Zhu	2021-02-28	Build site.
Rmd	bb7c896	Donghe-Zhu	2021-02-28	local rebuild
html	efdc047	Donghe-Zhu	2021-02-28	Build site.
html	e9a7418	Donghe-Zhu	2021-02-28	Build site.
html	e152917	Donghe-Zhu	2021-02-28	Build site.
html	feb991c	Donghe-Zhu	2021-02-27	Build site.
html	287123c	Donghe-Zhu	2021-02-27	Build site.
html	54d5b5b	Donghe-Zhu	2021-02-27	Build site.
html	330f064	Donghe-Zhu	2021-02-27	Build site.
html	adbc9bc	Donghe-Zhu	2021-02-27	Build site.
html	5937141	Donghe-Zhu	2021-02-27	Build site.
html	4414bbf	Donghe-Zhu	2021-02-27	Build site.
html	a265efb	Donghe-Zhu	2021-02-27	Build site.
html	19edd1e	Donghe-Zhu	2021-02-27	Build site.
html	f20483f	Donghe-Zhu	2021-02-26	Build site.
html	6a2c7b3	Donghe-Zhu	2021-02-25	Build site.
html	02b976d	Donghe-Zhu	2021-02-24	Build site.
html	354c224	Donghe-Zhu	2021-02-24	Build site.
html	1a0a88a	Donghe-Zhu	2021-02-24	Build site.
html	57f701e	Donghe-Zhu	2021-02-24	Build site.
html	06f3149	Donghe-Zhu	2021-02-16	Build site.
html	401eab3	Donghe-Zhu	2021-02-15	Build site.
html	e3bba84	Donghe-Zhu	2021-02-15	Build site.
html	5dce4b1	Donghe-Zhu	2021-02-15	Build site.
html	4469a0c	Donghe-Zhu	2021-02-13	Build site.
Rmd	c99d126	Donghe-Zhu	2021-02-13	local rebuild
html	5ae6a69	Donghe-Zhu	2021-02-10	Build site.
html	05385dc	Donghe-Zhu	2021-02-10	Build site.
Rmd	67fa8d0	Donghe-Zhu	2021-02-09	local rebuild
html	f791ae4	Donghe-Zhu	2021-02-09	Build site.
html	f71ae34	Donghe-Zhu	2021-02-09	Build site.
html	c011832	Donghe-Zhu	2021-02-09	Build site.
html	a145fa7	Donghe-Zhu	2021-02-09	Build site.
html	c344e42	Donghe-Zhu	2021-02-08	Build site.
html	2f095d7	Donghe-Zhu	2021-02-07	Build site.
html	2305044	Donghe-Zhu	2021-02-07	Build site.
Rmd	c3638c1	Donghe-Zhu	2021-02-07	local rebuild
html	1fad5f1	Donghe-Zhu	2021-02-07	Build site.
html	ca03c39	Donghe-Zhu	2021-02-07	Build site.
html	e2ffc14	Donghe-Zhu	2021-02-05	Build site.
html	cd7c52c	Donghe-Zhu	2021-02-04	Build site.
html	bcf84f4	Donghe-Zhu	2021-02-02	Build site.
html	a518739	Donghe-Zhu	2021-02-01	Build site.
html	61666de	Donghe-Zhu	2021-01-31	Build site.
html	865b582	Donghe-Zhu	2021-01-31	Build site.
html	3e68089	Donghe-Zhu	2021-01-31	Build site.
html	ecf335c	Donghe-Zhu	2021-01-31	Build site.
html	a618965	Donghe-Zhu	2021-01-31	Build site.
html	59e006e	Donghe-Zhu	2021-01-31	Build site.
html	a1c8f87	Donghe-Zhu	2021-01-31	Build site.
html	ae5c18f	Donghe-Zhu	2021-01-31	Build site.
html	b50fe52	Donghe-Zhu	2021-01-31	Build site.
Rmd	a543fb2	Donghe-Zhu	2021-01-31	local rebuild
html	ac99ae5	jens-daniel-mueller	2021-01-29	code review
html	b5bdcaf	Donghe-Zhu	2021-01-29	Build site.
Rmd	b234505	Donghe-Zhu	2021-01-29	MLR approach across all depth
html	442010d	Donghe-Zhu	2021-01-29	Build site.
html	372adf5	Donghe-Zhu	2021-01-29	Build site.
html	af8788e	Donghe-Zhu	2021-01-29	Build site.
html	21c91c9	Donghe-Zhu	2021-01-29	Build site.
html	eded038	Donghe-Zhu	2021-01-29	Build site.
html	541d4dd	Donghe-Zhu	2021-01-29	Build site.
html	6a75576	Donghe-Zhu	2021-01-28	Build site.
html	16fba40	Donghe-Zhu	2021-01-28	Build site.
html	12bc567	Donghe-Zhu	2021-01-27	Build site.
html	ceed31b	Donghe-Zhu	2021-01-27	Build site.
html	342402d	Donghe-Zhu	2021-01-27	Build site.
html	5bad5c2	Donghe-Zhu	2021-01-27	Build site.
html	61efb56	Donghe-Zhu	2021-01-25	Build site.
html	48f638e	Donghe-Zhu	2021-01-25	Build site.
html	c1cec47	Donghe-Zhu	2021-01-25	Build site.
Rmd	560dcf7	Donghe-Zhu	2021-01-25	no temp
html	05ffb0c	Donghe-Zhu	2021-01-25	Build site.
html	8b97165	Donghe-Zhu	2021-01-25	Build site.
Rmd	c41c01f	Donghe-Zhu	2021-01-25	OXYGEN REPLACE AOU
html	c569946	Donghe-Zhu	2021-01-24	Build site.
html	a2f0d56	Donghe-Zhu	2021-01-23	Build site.
html	28509fc	Donghe-Zhu	2021-01-23	Build site.
html	4c28e4a	Donghe-Zhu	2021-01-22	Build site.
html	24cc264	jens-daniel-mueller	2021-01-22	cleaned /docs before creating copies
html	88eb28f	Donghe-Zhu	2021-01-21	Build site.
html	2679490	Donghe-Zhu	2021-01-21	Build site.
html	7891955	Donghe-Zhu	2021-01-21	Build site.
html	d4cf1cb	Donghe-Zhu	2021-01-21	Build site.
html	1f3e5b6	jens-daniel-mueller	2021-01-20	Build site.
Rmd	30afcd9	jens-daniel-mueller	2021-01-20	local rebuild after revision
html	0e7bdf1	jens-daniel-mueller	2021-01-15	cleaning template repository
html	73cbef3	jens-daniel-mueller	2021-01-15	Build site.
html	4571843	jens-daniel-mueller	2021-01-14	revision and html deleted for template copying
html	23151cd	jens-daniel-mueller	2021-01-14	Build site.
html	b3564aa	jens-daniel-mueller	2021-01-14	Build site.
html	8d032c3	jens-daniel-mueller	2021-01-14	Build site.
html	022871c	Donghe-Zhu	2021-01-13	Build site.
Rmd	d44f36f	Donghe-Zhu	2021-01-13	reorder analysis final
html	17dee1d	jens-daniel-mueller	2021-01-13	Build site.
html	a076226	Donghe-Zhu	2021-01-11	Build site.
Rmd	52eff18	Donghe-Zhu	2021-01-09	Implemet model_run and subsetting
html	7cdea0c	jens-daniel-mueller	2021-01-06	Build site.
Rmd	b5934dd	jens-daniel-mueller	2021-01-06	local rebuild after revision
html	fa85b93	jens-daniel-mueller	2021-01-06	Build site.
html	e5cb81a	Donghe-Zhu	2021-01-05	Build site.
Rmd	608cc45	Donghe-Zhu	2021-01-05	modification of analysis
html	a499f10	Donghe-Zhu	2021-01-05	Build site.
Rmd	715bdb4	Donghe-Zhu	2021-01-02	model modification
html	fb8a752	Donghe-Zhu	2020-12-23	Build site.
Rmd	82e3c9c	Donghe-Zhu	2020-12-23	first build after creating model template
html	8fae0b2	Donghe-Zhu	2020-12-21	Build site.
Rmd	00a1322	Donghe-Zhu	2020-12-21	first build after creating model template
html	c8b76b3	jens-daniel-mueller	2020-12-19	Build site.
Rmd	b5fedce	jens-daniel-mueller	2020-12-19	first build after creating model template
Rmd	8e8abf5	Jens Müller	2020-12-18	Initial commit

1 Required data

Currently, following data sets are used for mapping:

Cmorized model runA climatologies in 2007, with variables
- Phosphate (-> phosphate_star)
- Silicate
- Oxygen
- AOU (already calculated)
- TAlk (surface only)
- TCO2 (surface only)

if (params_local$model_runs == "AD") {
  
  climatology <- read_csv(paste(path_preprocessing, "climatology_runA_2007.csv", sep = ""))
  
}

if (params_local$model_runs == "CB") {
  
  climatology <- read_csv(paste(path_preprocessing, "climatology_runC_2007.csv", sep = ""))
  
}

climatology <- climatology %>%
  rename(aou = AOU, TCO2 = tco2, TAlk = talk)

predictors <- climatology %>%
  select(lon, lat, depth, basin_AIP, gamma, 
         phosphate, oxygen, temp, nitrate,
         any_of(params_local$MLR_predictors))

predictors_surface <- climatology %>%
  select(lon, lat, depth, basin_AIP, gamma, sal, temp, TCO2, TAlk, phosphate, silicate)

1.1 Apply density threshold

The predictor field was split into two parts:

Deep water: neutral densities >= 26 and depth >= 150m
Shallow water: rest

# predictors for deep waters
predictors <- predictors %>%
  filter(depth >= params_local$depth_min | gamma >= params_local$gamma_min)

# predictors for surface waters
predictors_surface <- predictors_surface %>%
  filter(depth < params_local$depth_min,
         gamma < params_local$gamma_min)

1.2 Apply basin mask

Data outside the WOA18 basin mask were removed for further analysis.

predictors <- inner_join(predictors, basinmask)
predictors_surface <- inner_join(predictors_surface, basinmask)

1.3 Control plots

Plots below are generated to control successful merging of data sets.

1.3.1 Maps interior

p_map_climatology(
  df = predictors, 
  var = "phosphate")

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2f095d7	Donghe-Zhu	2021-02-07
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

p_map_climatology(
  df = predictors, 
  var = "temp")

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2f095d7	Donghe-Zhu	2021-02-07
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

1.3.2 Maps surface

if (params_local$depth_min != 0) {
  p_map_climatology(df = predictors_surface,
                    var = "TAlk")
}

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2f095d7	Donghe-Zhu	2021-02-07
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

if (params_local$depth_min != 0) {
  p_map_climatology(df = predictors_surface,
                    var = "TCO2")
}

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2f095d7	Donghe-Zhu	2021-02-07
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

if (params_local$depth_min != 0) {
  p_map_climatology(df = predictors_surface,
                    var = "sal")
}

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2f095d7	Donghe-Zhu	2021-02-07
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

if (params_local$depth_min != 0) {
  p_map_climatology(df = predictors_surface,
                    var = "temp")
}

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2f095d7	Donghe-Zhu	2021-02-07
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

1.3.3 Predictor profiles

Likewise, predictor profiles for the North Atlantic (40.5 / 335.5) are plotted to control successful merging of the data sets.

# subset data
N_Atl <- predictors %>% 
  filter(lat == params_global$lat_Atl_profile,
         lon == params_global$lon_Atl_section)

# pivot table to long format
N_Atl <- N_Atl %>%
  select(-c(basin, basin_AIP)) %>%
  pivot_longer(c(any_of(params_local$MLR_predictors), gamma), 
               names_to = "parameter", values_to = "value")

# plot profiles
N_Atl %>% 
  ggplot(aes(value, depth)) +
  geom_path() +
  geom_point() +
  scale_y_reverse() +
  facet_wrap(~parameter,
             scales = "free_x",
             ncol = 2)

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
8c1e978	Donghe-Zhu	2021-03-05
89c3e58	Donghe-Zhu	2021-03-03
13666ca	Donghe-Zhu	2021-03-01
7a388f7	Donghe-Zhu	2021-03-01
799e913	Donghe-Zhu	2021-03-01
66ff99f	Donghe-Zhu	2021-03-01
ac9bb7a	Donghe-Zhu	2021-02-28
efdc047	Donghe-Zhu	2021-02-28
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
19edd1e	Donghe-Zhu	2021-02-27
354c224	Donghe-Zhu	2021-02-24
5dce4b1	Donghe-Zhu	2021-02-15
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
372adf5	Donghe-Zhu	2021-01-29
af8788e	Donghe-Zhu	2021-01-29
21c91c9	Donghe-Zhu	2021-01-29
eded038	Donghe-Zhu	2021-01-29
541d4dd	Donghe-Zhu	2021-01-29
6a75576	Donghe-Zhu	2021-01-28
48f638e	Donghe-Zhu	2021-01-25
c1cec47	Donghe-Zhu	2021-01-25
05ffb0c	Donghe-Zhu	2021-01-25
8b97165	Donghe-Zhu	2021-01-25
c569946	Donghe-Zhu	2021-01-24
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

rm(N_Atl)

2 Prepare predictor fields

Additional predictor fields need to calculated from available climatologies

2.1 PO₄* calculation

The predictor PO₄* was be calculated according to Clement and Gruber (2018), ie based on oxygen. Please note that an erroneous equations for PO4* calculation is given in the supplement of Gruber et al (2019), based on nitrate.

predictors <- predictors %>% 
  mutate(phosphate_star = b_phosphate_star(phosphate, oxygen))

2.2 SiO₃* calculation

The predictor SiO₃* was be calculated according to Sarmiento et al. (2004), ie based on silicate and nitrate.

predictors <- predictors %>% 
  mutate(silicate_star = b_silicate_star(silicate, nitrate))

2.2.1 Maps

p_map_climatology(
  df = predictors,
  var = "phosphate_star",
  col = "divergent")

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2f095d7	Donghe-Zhu	2021-02-07
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

p_map_climatology(
  df = predictors,
  var = "silicate_star",
  col = "divergent")

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
4469a0c	Donghe-Zhu	2021-02-13

2.2.2 Global section

p_section_global(
  df = predictors,
  var = "phosphate_star",
  col = "divergent")

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2f095d7	Donghe-Zhu	2021-02-07
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

p_section_global(
  df = predictors,
  var = "silicate_star",
  col = "divergent")

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
4469a0c	Donghe-Zhu	2021-02-13

2.3 AOU

AOU was calculated as the difference between saturation concentration and observed concentration. CAVEAT: Algorithms used to calculate oxygen saturation concentration are not yet identical in GLODAP data set (fitting) and predictor climatologies (mapping).

2.3.1 Maps

if ("aou" %in% params_local$MLR_predictors){
p_map_climatology(
  df = predictors,
  var = "aou",
  col = "divergent")
}

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
799e913	Donghe-Zhu	2021-03-01
66ff99f	Donghe-Zhu	2021-03-01
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2f095d7	Donghe-Zhu	2021-02-07
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
372adf5	Donghe-Zhu	2021-01-29
af8788e	Donghe-Zhu	2021-01-29
05ffb0c	Donghe-Zhu	2021-01-25
8b97165	Donghe-Zhu	2021-01-25
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

2.3.2 Global section

if ("aou" %in% params_local$MLR_predictors){
p_section_global(
  df = predictors,
  var = "aou",
  col = "divergent")
}

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
799e913	Donghe-Zhu	2021-03-01
66ff99f	Donghe-Zhu	2021-03-01
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2f095d7	Donghe-Zhu	2021-02-07
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
372adf5	Donghe-Zhu	2021-01-29
af8788e	Donghe-Zhu	2021-01-29
05ffb0c	Donghe-Zhu	2021-01-25
8b97165	Donghe-Zhu	2021-01-25
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

2.4 Isoneutral slabs

The following boundaries for isoneutral slabs were defined:

Atlantic: -, 26, 26.75, 27.25, 27.5, 27.75, 27.85, 27.95, 28.05, 28.1, 28.15, 28.2,
Indo-Pacific: -, 26, 26.75, 27, 27.25, 27.5, 27.75, 27.85, 27.95, 28.05, 28.1,

Continuous neutral density (gamma) values based on WOA18 are grouped into isoneutral slabs.

predictors <- m_cut_gamma(predictors, "gamma")

3 Plot all predictor sections

3.1 Deep waters

Predictor sections along with lines are shown below for each (potential) predictor variable.

map +
  geom_bin2d(data = predictors,
             aes(lon, lat),
             binwidth = c(1, 1)) +
  geom_vline(xintercept = params_global$longitude_sections_regular,
             col = "white") +
  scale_fill_viridis_c(direction = -1,
                       name = "Number of depth levels") +
  theme(legend.position = "bottom")

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2f095d7	Donghe-Zhu	2021-02-07
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
7cdea0c	jens-daniel-mueller	2021-01-06
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

for (i_var in append(params_local$MLR_predictors, "gamma")) {
  print(
    p_section_climatology_regular(
      df = predictors,
      var = i_var)
    )
}

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2f095d7	Donghe-Zhu	2021-02-07
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
c1cec47	Donghe-Zhu	2021-01-25
05ffb0c	Donghe-Zhu	2021-01-25
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2f095d7	Donghe-Zhu	2021-02-07
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
48f638e	Donghe-Zhu	2021-01-25
05ffb0c	Donghe-Zhu	2021-01-25
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
8c1e978	Donghe-Zhu	2021-03-05
89c3e58	Donghe-Zhu	2021-03-03
13666ca	Donghe-Zhu	2021-03-01
7a388f7	Donghe-Zhu	2021-03-01
66ff99f	Donghe-Zhu	2021-03-01
efdc047	Donghe-Zhu	2021-02-28
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
19edd1e	Donghe-Zhu	2021-02-27
354c224	Donghe-Zhu	2021-02-24
5dce4b1	Donghe-Zhu	2021-02-15
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2f095d7	Donghe-Zhu	2021-02-07
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
372adf5	Donghe-Zhu	2021-01-29
af8788e	Donghe-Zhu	2021-01-29
48f638e	Donghe-Zhu	2021-01-25
05ffb0c	Donghe-Zhu	2021-01-25
8b97165	Donghe-Zhu	2021-01-25
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
8c1e978	Donghe-Zhu	2021-03-05
89c3e58	Donghe-Zhu	2021-03-03
13666ca	Donghe-Zhu	2021-03-01
7a388f7	Donghe-Zhu	2021-03-01
799e913	Donghe-Zhu	2021-03-01
66ff99f	Donghe-Zhu	2021-03-01
ac9bb7a	Donghe-Zhu	2021-02-28
efdc047	Donghe-Zhu	2021-02-28
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
19edd1e	Donghe-Zhu	2021-02-27
354c224	Donghe-Zhu	2021-02-24
5dce4b1	Donghe-Zhu	2021-02-15
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2f095d7	Donghe-Zhu	2021-02-07
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
372adf5	Donghe-Zhu	2021-01-29
af8788e	Donghe-Zhu	2021-01-29
21c91c9	Donghe-Zhu	2021-01-29
eded038	Donghe-Zhu	2021-01-29
48f638e	Donghe-Zhu	2021-01-25
05ffb0c	Donghe-Zhu	2021-01-25
8b97165	Donghe-Zhu	2021-01-25
c569946	Donghe-Zhu	2021-01-24
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
89c3e58	Donghe-Zhu	2021-03-03
13666ca	Donghe-Zhu	2021-03-01
7a388f7	Donghe-Zhu	2021-03-01
799e913	Donghe-Zhu	2021-03-01
66ff99f	Donghe-Zhu	2021-03-01
ac9bb7a	Donghe-Zhu	2021-02-28
efdc047	Donghe-Zhu	2021-02-28
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
19edd1e	Donghe-Zhu	2021-02-27
354c224	Donghe-Zhu	2021-02-24
5dce4b1	Donghe-Zhu	2021-02-15
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2f095d7	Donghe-Zhu	2021-02-07
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
372adf5	Donghe-Zhu	2021-01-29
af8788e	Donghe-Zhu	2021-01-29
21c91c9	Donghe-Zhu	2021-01-29
eded038	Donghe-Zhu	2021-01-29
541d4dd	Donghe-Zhu	2021-01-29
6a75576	Donghe-Zhu	2021-01-28
48f638e	Donghe-Zhu	2021-01-25
05ffb0c	Donghe-Zhu	2021-01-25
8b97165	Donghe-Zhu	2021-01-25
c569946	Donghe-Zhu	2021-01-24
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
89c3e58	Donghe-Zhu	2021-03-03
13666ca	Donghe-Zhu	2021-03-01
7a388f7	Donghe-Zhu	2021-03-01
799e913	Donghe-Zhu	2021-03-01
66ff99f	Donghe-Zhu	2021-03-01
ac9bb7a	Donghe-Zhu	2021-02-28
efdc047	Donghe-Zhu	2021-02-28
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
19edd1e	Donghe-Zhu	2021-02-27
354c224	Donghe-Zhu	2021-02-24
5dce4b1	Donghe-Zhu	2021-02-15
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2f095d7	Donghe-Zhu	2021-02-07
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
372adf5	Donghe-Zhu	2021-01-29
af8788e	Donghe-Zhu	2021-01-29
21c91c9	Donghe-Zhu	2021-01-29
6a75576	Donghe-Zhu	2021-01-28
48f638e	Donghe-Zhu	2021-01-25
05ffb0c	Donghe-Zhu	2021-01-25
8b97165	Donghe-Zhu	2021-01-25
c569946	Donghe-Zhu	2021-01-24
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
89c3e58	Donghe-Zhu	2021-03-03
c911669	Donghe-Zhu	2021-03-03
13666ca	Donghe-Zhu	2021-03-01
7a388f7	Donghe-Zhu	2021-03-01
799e913	Donghe-Zhu	2021-03-01
66ff99f	Donghe-Zhu	2021-03-01
ac9bb7a	Donghe-Zhu	2021-02-28
efdc047	Donghe-Zhu	2021-02-28
e9a7418	Donghe-Zhu	2021-02-28
287123c	Donghe-Zhu	2021-02-27
54d5b5b	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
a265efb	Donghe-Zhu	2021-02-27
19edd1e	Donghe-Zhu	2021-02-27
354c224	Donghe-Zhu	2021-02-24
1a0a88a	Donghe-Zhu	2021-02-24
5dce4b1	Donghe-Zhu	2021-02-15
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2f095d7	Donghe-Zhu	2021-02-07
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
372adf5	Donghe-Zhu	2021-01-29
6a75576	Donghe-Zhu	2021-01-28
48f638e	Donghe-Zhu	2021-01-25
05ffb0c	Donghe-Zhu	2021-01-25
8b97165	Donghe-Zhu	2021-01-25
c569946	Donghe-Zhu	2021-01-24
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
89c3e58	Donghe-Zhu	2021-03-03
c911669	Donghe-Zhu	2021-03-03
13666ca	Donghe-Zhu	2021-03-01
7a388f7	Donghe-Zhu	2021-03-01
799e913	Donghe-Zhu	2021-03-01
66ff99f	Donghe-Zhu	2021-03-01
ac9bb7a	Donghe-Zhu	2021-02-28
efdc047	Donghe-Zhu	2021-02-28
e9a7418	Donghe-Zhu	2021-02-28
287123c	Donghe-Zhu	2021-02-27
54d5b5b	Donghe-Zhu	2021-02-27
330f064	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
5937141	Donghe-Zhu	2021-02-27
4414bbf	Donghe-Zhu	2021-02-27
a265efb	Donghe-Zhu	2021-02-27
19edd1e	Donghe-Zhu	2021-02-27
354c224	Donghe-Zhu	2021-02-24
1a0a88a	Donghe-Zhu	2021-02-24
5dce4b1	Donghe-Zhu	2021-02-15
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2f095d7	Donghe-Zhu	2021-02-07
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
372adf5	Donghe-Zhu	2021-01-29
6a75576	Donghe-Zhu	2021-01-28
48f638e	Donghe-Zhu	2021-01-25
05ffb0c	Donghe-Zhu	2021-01-25
8b97165	Donghe-Zhu	2021-01-25
c569946	Donghe-Zhu	2021-01-24
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

3.2 Surface waters

Predictor sections along with lines are shown below for each (potential) predictor variable.

map +
  geom_bin2d(data = predictors_surface,
             aes(lon, lat),
             binwidth = c(1, 1)) +
  geom_vline(xintercept = params_global$longitude_sections_regular,
             col = "white") +
  scale_fill_viridis_c(direction = -1, name = "Number of depth levels") +
  theme(legend.position = "bottom")

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2f095d7	Donghe-Zhu	2021-02-07
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
7cdea0c	jens-daniel-mueller	2021-01-06
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

if (params_local$depth_min != 0) {
  vars <-
    c("gamma",
      "sal",
      "temp",
      "TCO2",
      "TAlk")
  
  # i_var <- vars[1]
  
  for (i_var in vars) {
    print(p_section_climatology_regular(
      df = predictors_surface,
      var = i_var,
      surface = "y"
    ))
  }
}

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2f095d7	Donghe-Zhu	2021-02-07
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2f095d7	Donghe-Zhu	2021-02-07
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2f095d7	Donghe-Zhu	2021-02-07
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2f095d7	Donghe-Zhu	2021-02-07
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

Version	Author	Date
3fbbfa4	Donghe-Zhu	2021-03-07
287123c	Donghe-Zhu	2021-02-27
adbc9bc	Donghe-Zhu	2021-02-27
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
2f095d7	Donghe-Zhu	2021-02-07
2305044	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
bcf84f4	Donghe-Zhu	2021-02-02
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
b5bdcaf	Donghe-Zhu	2021-01-29
442010d	Donghe-Zhu	2021-01-29
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

4 Write csv

predictors %>%
  write_csv(paste(path_version_data,
                  "predictors_M2007.csv",
                  sep = ""))

predictors_surface %>%
  write_csv(paste(path_version_data,
                  "predictors_surface_M2007.csv",
                  sep = ""))

sessionInfo()

R version 4.0.3 (2020-10-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: openSUSE Leap 15.2

Matrix products: default
BLAS:   /usr/local/R-4.0.3/lib64/R/lib/libRblas.so
LAPACK: /usr/local/R-4.0.3/lib64/R/lib/libRlapack.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] gsw_1.0-5       testthat_3.0.1  marelac_2.1.10  shape_1.4.5    
 [5] metR_0.9.0      scico_1.2.0     patchwork_1.1.1 collapse_1.5.0 
 [9] forcats_0.5.0   stringr_1.4.0   dplyr_1.0.2     purrr_0.3.4    
[13] readr_1.4.0     tidyr_1.1.2     tibble_3.0.4    ggplot2_3.3.3  
[17] tidyverse_1.3.0 workflowr_1.6.2

loaded via a namespace (and not attached):
 [1] httr_1.4.2               viridisLite_0.3.0        jsonlite_1.7.2          
 [4] here_1.0.1               modelr_0.1.8             assertthat_0.2.1        
 [7] blob_1.2.1               cellranger_1.1.0         yaml_2.2.1              
[10] pillar_1.4.7             backports_1.1.10         lattice_0.20-41         
[13] glue_1.4.2               RcppEigen_0.3.3.9.1      digest_0.6.27           
[16] promises_1.1.1           checkmate_2.0.0          rvest_0.3.6             
[19] colorspace_2.0-0         htmltools_0.5.0          httpuv_1.5.4            
[22] Matrix_1.2-18            pkgconfig_2.0.3          broom_0.7.5             
[25] seacarb_3.2.15           haven_2.3.1              scales_1.1.1            
[28] whisker_0.4              later_1.1.0.1            git2r_0.27.1            
[31] farver_2.0.3             generics_0.1.0           ellipsis_0.3.1          
[34] withr_2.3.0              cli_2.2.0                magrittr_2.0.1          
[37] crayon_1.3.4             readxl_1.3.1             evaluate_0.14           
[40] fs_1.5.0                 fansi_0.4.1              xml2_1.3.2              
[43] RcppArmadillo_0.10.1.2.2 oce_1.2-0                tools_4.0.3             
[46] data.table_1.13.6        hms_0.5.3                lifecycle_0.2.0         
[49] munsell_0.5.0            reprex_0.3.0             isoband_0.2.3           
[52] compiler_4.0.3           rlang_0.4.10             grid_4.0.3              
[55] rstudioapi_0.13          labeling_0.4.2           rmarkdown_2.5           
[58] gtable_0.3.0             DBI_1.1.0                R6_2.5.0                
[61] lubridate_1.7.9          knitr_1.30               rprojroot_2.0.2         
[64] stringi_1.5.3            parallel_4.0.3           Rcpp_1.0.5              
[67] vctrs_0.3.6              dbplyr_1.4.4             tidyselect_1.1.0        
[70] xfun_0.20

Mapping - predictor preparation

Jens Daniel Müller and Donghe Zhu

08 March, 2021

1 Required data

1.1 Apply density threshold

1.2 Apply basin mask

1.3 Control plots

1.3.1 Maps interior

1.3.2 Maps surface

1.3.3 Predictor profiles

2 Prepare predictor fields

2.1 PO₄* calculation

2.2 SiO₃* calculation

2.2.1 Maps

2.2.2 Global section

2.3 AOU

2.3.1 Maps

2.3.2 Global section

2.4 Isoneutral slabs

3 Plot all predictor sections

3.1 Deep waters

3.2 Surface waters

4 Write csv

Mapping - predictor preparation

Jens Daniel Müller and Donghe Zhu

08 March, 2021

1 Required data

1.1 Apply density threshold

1.2 Apply basin mask

1.3 Control plots

1.3.1 Maps interior

1.3.2 Maps surface

1.3.3 Predictor profiles

2 Prepare predictor fields

2.1 PO4* calculation

2.2 SiO3* calculation

2.2.1 Maps

2.2.2 Global section

2.3 AOU

2.3.1 Maps

2.3.2 Global section

2.4 Isoneutral slabs

3 Plot all predictor sections

3.1 Deep waters

3.2 Surface waters

4 Write csv

2.1 PO₄* calculation

2.2 SiO₃* calculation