Last updated: 2021-05-28

Checks: 7 0

Knit directory: emlr_mod_v_XXX/

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Repository version: c29cc35

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Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/

Untracked files:
    Untracked:  docs_1982-2000_2000-2012_GC_0.6/
    Untracked:  docs_1982-2000_2000-2012_GV_1.0/
    Untracked:  docs_1982-2000_2000-2012_RC_3.7/
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    Untracked:  docs_2000-2009_2010-2019_RC_0.9/
    Untracked:  docs_2000-2009_2010-2019_RV_0.8/

Unstaged changes:
    Modified:   data/auxillary/params_local.rds

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Rmd 8e8abf5 Jens Müller 2020-12-18 Initial commit

1 Required packages

Packages available on CRAN are not listed here.

Following packages need to be installed but are not available on CRAN:

  • None

Run the code below for installation from Github repositories.

Previously, following packages were required, but are not used currently:

# remotes::install_github("moodymudskipper/cutr")
# remotes::install_github("rsquaredacademy/olsrr", ref = "develop")

2 Python

2.1 Code

Python code used in this project is stored on updata and sourced from there, when required in .Rmd files.

2.2 Required packages

To install required python packages from within R-Studio, run the code below. On ETH servers, those packages are already installed.

# the commands below must only be run once, when you first run the python code and need to install required packages

py_install("pandas")
py_install("numpy")
py_install("shapely")
py_install("math")

sessionInfo()
R version 4.0.3 (2020-10-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: openSUSE Leap 15.2

Matrix products: default
BLAS:   /usr/local/R-4.0.3/lib64/R/lib/libRblas.so
LAPACK: /usr/local/R-4.0.3/lib64/R/lib/libRlapack.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] reticulate_1.18 workflowr_1.6.2

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.5      rstudioapi_0.13 whisker_0.4     knitr_1.30     
 [5] magrittr_2.0.1  lattice_0.20-41 R6_2.5.0        rlang_0.4.10   
 [9] stringr_1.4.0   tools_4.0.3     grid_4.0.3      xfun_0.20      
[13] git2r_0.27.1    htmltools_0.5.0 ellipsis_0.3.1  rprojroot_2.0.2
[17] yaml_2.2.1      digest_0.6.27   tibble_3.0.4    lifecycle_1.0.0
[21] crayon_1.3.4    Matrix_1.2-18   later_1.1.0.1   vctrs_0.3.6    
[25] promises_1.1.1  fs_1.5.0        glue_1.4.2      evaluate_0.14  
[29] rmarkdown_2.5   stringi_1.5.3   compiler_4.0.3  pillar_1.4.7   
[33] jsonlite_1.7.2  httpuv_1.5.4    pkgconfig_2.0.3