Budgets

workflowr

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Last updated: 2022-07-15

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Knit directory: emlr_obs_analysis/analysis/

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These are the previous versions of the repository in which changes were made to the R Markdown (analysis/CN_target_budgets.Rmd) and HTML (docs/CN_target_budgets.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
html	1aabfea	jens-daniel-mueller	2022-07-12	Build site.
Rmd	567c3ed	jens-daniel-mueller	2022-07-12	revised bias decomposition
html	b44c72a	jens-daniel-mueller	2022-07-03	Build site.
html	6e173bf	jens-daniel-mueller	2022-06-30	updated regional budget plots
html	1ada20c	jens-daniel-mueller	2022-06-29	Build site.
Rmd	b2dfc4d	jens-daniel-mueller	2022-06-29	rebuild with rerun analysis
html	a13a7cf	jens-daniel-mueller	2022-06-28	Build site.
Rmd	ef081b3	jens-daniel-mueller	2022-06-28	rebuild with additional analysis

---

version_id_pattern <- "n"
config <- "MLR_basins"

1 Read files

print(version_id_pattern)

[1] "n"

# identify required version IDs

Version_IDs_1 <- list.files(path = "/nfs/kryo/work/jenmueller/emlr_cant/observations",
                            pattern = paste0("v_1", "n"))

Version_IDs_2 <- list.files(path = "/nfs/kryo/work/jenmueller/emlr_cant/observations",
                            pattern = paste0("v_2", "n"))

Version_IDs_3 <- list.files(path = "/nfs/kryo/work/jenmueller/emlr_cant/observations",
                            pattern = paste0("v_3", "n"))

Version_IDs <- c(Version_IDs_1, Version_IDs_2, Version_IDs_3)

# print(Version_IDs)

1.1 Global

for (i_Version_IDs in Version_IDs) {
  # i_Version_IDs <- Version_IDs[1]
  
  # print(i_Version_IDs)
  
  path_version_data     <-
    paste(path_observations,
          i_Version_IDs,
          "/data/",
          sep = "")
  
  # load and join data files
  
  dcant_budget_global <-
    read_csv(paste(path_version_data,
                   "dcant_budget_global.csv",
                   sep = ""))
  
  dcant_budget_global_mod_truth <-
    read_csv(paste(
      path_version_data,
      "dcant_budget_global_mod_truth.csv",
      sep = ""
    ))
  
  dcant_budget_global_bias <-
    read_csv(paste(path_version_data,
                   "dcant_budget_global_bias.csv",
                   sep = ""))
  
  lm_best_predictor_counts <-
    read_csv(paste(path_version_data,
                   "lm_best_predictor_counts.csv",
                   sep = ""))
  
  lm_best_dcant <-
    read_csv(paste(path_version_data,
                   "lm_best_dcant.csv",
                   sep = ""))
  
  dcant_budget_global <- bind_rows(dcant_budget_global,
                                      dcant_budget_global_mod_truth)
  
  dcant_budget_global <- dcant_budget_global %>%
    mutate(Version_ID = i_Version_IDs)
  
  dcant_budget_global_bias <- dcant_budget_global_bias %>%
    mutate(Version_ID = i_Version_IDs)
  
  lm_best_predictor_counts <- lm_best_predictor_counts %>%
    mutate(Version_ID = i_Version_IDs)
  
  lm_best_dcant <- lm_best_dcant %>%
    mutate(Version_ID = i_Version_IDs)

  params_local <-
    read_rds(paste(path_version_data,
                   "params_local.rds",
                   sep = ""))
  
  params_local <- bind_cols(
    Version_ID = i_Version_IDs,
    MLR_basins := str_c(params_local$MLR_basins, collapse = "|"),
    tref1 = params_local$tref1,
    tref2 = params_local$tref2)
  
  tref <- read_csv(paste(path_version_data,
                         "tref.csv",
                         sep = ""))
  
  params_local <- params_local %>%
    mutate(
      median_year_1 = sort(tref$median_year)[1],
      median_year_2 = sort(tref$median_year)[2],
      duration = median_year_2 - median_year_1,
      period = paste(median_year_1, "-", median_year_2)
    )
  
  if (exists("dcant_budget_global_all")) {
    dcant_budget_global_all <-
      bind_rows(dcant_budget_global_all, dcant_budget_global)
  }
  
  if (!exists("dcant_budget_global_all")) {
    dcant_budget_global_all <- dcant_budget_global
  }
  
  if (exists("dcant_budget_global_bias_all")) {
    dcant_budget_global_bias_all <-
      bind_rows(dcant_budget_global_bias_all,
                dcant_budget_global_bias)
  }

  if (!exists("dcant_budget_global_bias_all")) {
    dcant_budget_global_bias_all <- dcant_budget_global_bias
  }
  
    
  if (exists("lm_best_predictor_counts_all")) {
    lm_best_predictor_counts_all <-
      bind_rows(lm_best_predictor_counts_all, lm_best_predictor_counts)
  }
  
  if (!exists("lm_best_predictor_counts_all")) {
    lm_best_predictor_counts_all <- lm_best_predictor_counts
  }
    
  if (exists("lm_best_dcant_all")) {
    lm_best_dcant_all <-
      bind_rows(lm_best_dcant_all, lm_best_dcant)
  }
  
  if (!exists("lm_best_dcant_all")) {
    lm_best_dcant_all <- lm_best_dcant
  }
  
  if (exists("params_local_all")) {
    params_local_all <- bind_rows(params_local_all, params_local)
  }
  
  if (!exists("params_local_all")) {
    params_local_all <- params_local
  }
  
  
}

rm(
  dcant_budget_global,
  dcant_budget_global_bias,
  dcant_budget_global_mod_truth,
  lm_best_predictor_counts,
  lm_best_dcant,
  params_local,
  tref
)

1.2 Basins

# Version_IDs <- Version_IDs[1:length(Version_IDs)-1]

for (i_Version_IDs in Version_IDs) {
  # i_Version_IDs <- Version_IDs[1]
  
  # print(i_Version_IDs)
  
  path_version_data     <-
    paste(path_observations,
          i_Version_IDs,
          "/data/",
          sep = "")
  
  # load and join data files
  
  dcant_budget_basin_AIP <-
    read_csv(paste(path_version_data,
                   "dcant_budget_basin_AIP.csv",
                   sep = ""))
  
  dcant_budget_basin_AIP_mod_truth <-
    read_csv(paste(
      path_version_data,
      "dcant_budget_basin_AIP_mod_truth.csv",
      sep = ""
    ))
  
    
  dcant_budget_basin_AIP <- bind_rows(dcant_budget_basin_AIP,
                                      dcant_budget_basin_AIP_mod_truth)
  
  dcant_budget_basin_AIP_bias <-
    read_csv(paste(path_version_data,
                   "dcant_budget_basin_AIP_bias.csv",
                   sep = ""))
  
  dcant_slab_budget_bias <-
    read_csv(paste0(path_version_data,
                    "dcant_slab_budget_bias.csv"))

  dcant_slab_budget <-
    read_csv(paste0(path_version_data,
                    "dcant_slab_budget.csv"))

  dcant_budget_basin_AIP <- dcant_budget_basin_AIP %>%
    mutate(Version_ID = i_Version_IDs)
  
  dcant_budget_basin_AIP_bias <- dcant_budget_basin_AIP_bias %>%
    mutate(Version_ID = i_Version_IDs)
  
  dcant_slab_budget <- dcant_slab_budget %>%
    mutate(Version_ID = i_Version_IDs)
  
  dcant_slab_budget_bias <- dcant_slab_budget_bias %>%
    mutate(Version_ID = i_Version_IDs)
  
  if (exists("dcant_budget_basin_AIP_all")) {
    dcant_budget_basin_AIP_all <-
      bind_rows(dcant_budget_basin_AIP_all, dcant_budget_basin_AIP)
  }
  
  if (!exists("dcant_budget_basin_AIP_all")) {
    dcant_budget_basin_AIP_all <- dcant_budget_basin_AIP
  }
  
  if (exists("dcant_budget_basin_AIP_bias_all")) {
    dcant_budget_basin_AIP_bias_all <-
      bind_rows(dcant_budget_basin_AIP_bias_all,
                dcant_budget_basin_AIP_bias)
  }
  
  if (!exists("dcant_budget_basin_AIP_bias_all")) {
    dcant_budget_basin_AIP_bias_all <- dcant_budget_basin_AIP_bias
  }
  
  if (exists("dcant_slab_budget_all")) {
    dcant_slab_budget_all <-
      bind_rows(dcant_slab_budget_all, dcant_slab_budget)
  }
  
  if (!exists("dcant_slab_budget_all")) {
    dcant_slab_budget_all <- dcant_slab_budget
  }
  
  if (exists("dcant_slab_budget_bias_all")) {
    dcant_slab_budget_bias_all <-
      bind_rows(dcant_slab_budget_bias_all,
                dcant_slab_budget_bias)
  }
  
  if (!exists("dcant_slab_budget_bias_all")) {
    dcant_slab_budget_bias_all <- dcant_slab_budget_bias
  }
  
}

rm(
  dcant_budget_basin_AIP,
  dcant_budget_basin_AIP_bias,
  dcant_budget_basin_AIP_mod_truth,
  dcant_slab_budget,
  dcant_slab_budget_bias
)

1.3 Basins hemisphere

# Version_IDs <- Version_IDs[1:length(Version_IDs)-1]

for (i_Version_IDs in Version_IDs) {
  # i_Version_IDs <- Version_IDs[1]
  
  # print(i_Version_IDs)
  
  path_version_data     <-
    paste(path_observations,
          i_Version_IDs,
          "/data/",
          sep = "")
  
  # load and join data files
  
  dcant_budget_basin_MLR <-
    read_csv(paste(path_version_data,
                   "dcant_budget_basin_MLR.csv",
                   sep = ""))
  
  dcant_budget_basin_MLR_mod_truth <-
    read_csv(paste(
      path_version_data,
      "dcant_budget_basin_MLR_mod_truth.csv",
      sep = ""
    ))
  
    
  dcant_budget_basin_MLR <- bind_rows(dcant_budget_basin_MLR,
                                      dcant_budget_basin_MLR_mod_truth)
  

  dcant_budget_basin_MLR <- dcant_budget_basin_MLR %>%
    mutate(Version_ID = i_Version_IDs)

  if (exists("dcant_budget_basin_MLR_all")) {
    dcant_budget_basin_MLR_all <-
      bind_rows(dcant_budget_basin_MLR_all, dcant_budget_basin_MLR)
  }
  
  if (!exists("dcant_budget_basin_MLR_all")) {
    dcant_budget_basin_MLR_all <- dcant_budget_basin_MLR
  }

  
}

rm(
  dcant_budget_basin_MLR,
  dcant_budget_basin_MLR_mod_truth
)

1.4 Steady state

for (i_Version_IDs in Version_IDs) {
  # i_Version_IDs <- Version_IDs[1]
  
  # print(i_Version_IDs)
  
  path_version_data     <-
    paste(path_observations,
          i_Version_IDs,
          "/data/",
          sep = "")
  
  # load and join data files
  
  dcant_obs_budget <-
    read_csv(paste0(path_version_data,
                    "anom_dcant_obs_budget.csv"))
  
  dcant_obs_budget <- dcant_obs_budget %>%
    mutate(Version_ID = i_Version_IDs)
  
  if (exists("dcant_obs_budget_all")) {
    dcant_obs_budget_all <-
      bind_rows(dcant_obs_budget_all, dcant_obs_budget)
  }
  
  if (!exists("dcant_obs_budget_all")) {
    dcant_obs_budget_all <- dcant_obs_budget
  }
  
}


rm(dcant_obs_budget)

1.5 Atm CO2

co2_atm <-
  read_csv(paste(path_preprocessing,
                 "co2_atm.csv",
                 sep = ""))

all_predictors <- c("saltempaouoxygenphosphatenitratesilicate")

params_local_all <- params_local_all %>%
  mutate(MLR_predictors = str_remove_all(all_predictors,
                                         MLR_predictors))

dcant_budget_global_all <- dcant_budget_global_all %>%
  filter(estimate == "dcant", 
         method == "total") %>% 
  select(-c(estimate, method)) %>% 
  rename(dcant = value)

dcant_budget_global_all_depth <- dcant_budget_global_all

dcant_budget_global_all <- dcant_budget_global_all %>%
  filter(inv_depth == params_global$inventory_depth_standard)

dcant_budget_global_bias_all <- dcant_budget_global_bias_all %>%
  filter(estimate == "dcant") %>%
  select(-c(estimate))

dcant_budget_global_bias_all_depth <- dcant_budget_global_bias_all

dcant_budget_global_bias_all <- dcant_budget_global_bias_all %>%
  filter(inv_depth == params_global$inventory_depth_standard)

dcant_budget_basin_AIP_all <- dcant_budget_basin_AIP_all %>%
  filter(estimate == "dcant", 
         method == "total") %>% 
  select(-c(estimate, method)) %>% 
  rename(dcant = value)

dcant_budget_basin_AIP_all_depth <- dcant_budget_basin_AIP_all

dcant_budget_basin_AIP_all <- dcant_budget_basin_AIP_all %>%
  filter(inv_depth == params_global$inventory_depth_standard)

dcant_budget_basin_AIP_bias_all <- dcant_budget_basin_AIP_bias_all %>%
  filter(estimate == "dcant") %>% 
  select(-c(estimate))

dcant_budget_basin_AIP_bias_all_depth <- dcant_budget_basin_AIP_bias_all

dcant_budget_basin_AIP_bias_all <- dcant_budget_basin_AIP_bias_all %>%
  filter(inv_depth == params_global$inventory_depth_standard)

dcant_budget_basin_MLR_all <- dcant_budget_basin_MLR_all %>%
  filter(estimate == "dcant", 
         method == "total") %>% 
  select(-c(estimate, method)) %>% 
  rename(dcant = value)

# dcant_budget_basin_MLR_all_depth <- dcant_budget_basin_MLR_all

dcant_budget_basin_MLR_all <- dcant_budget_basin_MLR_all %>%
  filter(inv_depth == params_global$inventory_depth_standard)

# dcant_budget_basin_MLR_bias_all <- dcant_budget_basin_MLR_bias_all %>%
#   filter(estimate == "dcant") %>% 
#   select(-c(estimate))
# 
# dcant_budget_basin_MLR_bias_all_depth <- dcant_budget_basin_MLR_bias_all
# 
# dcant_budget_basin_MLR_bias_all <- dcant_budget_basin_MLR_bias_all %>%
#   filter(inv_depth == params_global$inventory_depth_standard)

2 Bias thresholds

global_bias_rel_max <- 10
global_bias_rel_max

[1] 10

regional_bias_rel_max <- 20
regional_bias_rel_max

[1] 20

3 Individual cases

3.1 Global

3.1.1 Absoulte values

legend_title = expression(atop(Delta * C[ant],
                               (mu * mol ~ kg ^ {
                                 -1
                               })))

dcant_budget_global_all %>%
  ggplot(aes(period, dcant, col = MLR_basins)) +
  geom_jitter(width = 0.05, height = 0) +
  scale_color_brewer(palette = "Dark2") +
  facet_grid(. ~ data_source) +
  ylim(0,NA) +
  theme(axis.text.x = element_text(angle = 45, hjust=1),
        axis.title.x = element_blank())

Past versions of cases_absolute_global-1.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

3.1.2 Biases

dcant_budget_global_bias_all %>%
  ggplot(aes(period, dcant_bias, col=MLR_basins)) +
  geom_hline(yintercept = 0) +
  scale_color_brewer(palette = "Dark2") +
  labs(y = expression(atop(Delta * C[ant] ~ bias,
                               (PgC)))) +
  geom_point() +
  theme(axis.text.x = element_blank(),
        axis.title.x = element_blank())

Past versions of cases_bias_global-1.png

Version	Author	Date
1aabfea	jens-daniel-mueller	2022-07-12
b44c72a	jens-daniel-mueller	2022-07-03
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

p_global_bias <-
  dcant_budget_global_bias_all %>%
  ggplot() +
  geom_hline(yintercept = global_bias_rel_max * c(-1, 1),
             linetype = 2) +
  geom_hline(yintercept = 0) +
  scale_color_brewer(palette = "Dark2") +
  labs(y = expression(Delta * C[ant] ~ bias ~ ("%")),
       title = "Model-based assesment") +
  theme(axis.title.x = element_blank()) +
  geom_point(aes(period, dcant_bias_rel, col = MLR_basins),
  alpha = 0.7) +
  theme(axis.text.x = element_text(angle = 45, hjust = 1),
        axis.title.x = element_blank())

p_global_bias

Past versions of cases_bias_global-2.png

Version	Author	Date
b44c72a	jens-daniel-mueller	2022-07-03
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

dcant_budget_global_bias_all %>%
  group_by(period) %>%
  summarise(
    dcant_bias_sd = sd(dcant_bias),
    dcant_bias = mean(dcant_bias),
    dcant_bias_rel_sd = sd(dcant_bias_rel),
    dcant_bias_rel = mean(dcant_bias_rel)
  ) %>%
  ungroup() %>%
  kable() %>%
  kable_styling() %>%
  scroll_box(height = "300px")

period	dcant_bias_sd	dcant_bias	dcant_bias_rel_sd	dcant_bias_rel
1994 - 2004	1.4930922	1.388333	8.464241	7.870370
1994 - 2014	1.7087494	2.767333	4.442002	7.193858
2004 - 2014	0.8620388	1.506167	4.138846	7.231451

3.2 Basins

3.2.1 Absoulte values

dcant_budget_basin_AIP_all %>%
  ggplot(aes(period, dcant, col = MLR_basins)) +
  geom_jitter(width = 0.05, height = 0) +
  scale_color_brewer(palette = "Dark2") +
  facet_grid(basin_AIP ~ data_source) +
  ylim(0,NA) +
  theme(axis.text.x = element_text(angle = 45, hjust=1),
        axis.title.x = element_blank())

Past versions of cases_absolute-1.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

3.2.2 Biases

dcant_budget_basin_AIP_bias_all %>%
  ggplot(aes(period, dcant_bias, col=MLR_basins)) +
  geom_hline(yintercept = 0) +
  geom_point() +
  facet_grid(basin_AIP ~ .)

Past versions of cases_bias-1.png

Version	Author	Date
1aabfea	jens-daniel-mueller	2022-07-12
b44c72a	jens-daniel-mueller	2022-07-03
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

dcant_budget_basin_AIP_bias_all %>%
  ggplot() +
  geom_tile(aes(y = 0, height = regional_bias_rel_max * 2,
                x = "2004 - 2014", width = Inf,
                fill = "bias\nthreshold"), alpha = 0.5) +
  geom_hline(yintercept = 0) +
  scale_fill_manual(values = "grey70", name = "") +
  scale_color_brewer(palette = "Dark2") +
  labs(y = expression(Delta ~ C[ant] ~ bias)) +
  theme(axis.title.x = element_blank()) +
  geom_jitter(aes(period, dcant_bias_rel, col = MLR_basins),
              width = 0.05, height = 0) +
  facet_grid(. ~ basin_AIP)

Past versions of cases_bias-2.png

Version	Author	Date
1aabfea	jens-daniel-mueller	2022-07-12
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

p_regional_bias <- 
  dcant_budget_basin_AIP_bias_all %>%
  ggplot() +
  geom_hline(yintercept = regional_bias_rel_max * c(-1,1),
             linetype = 2) +
  geom_hline(yintercept = 0) +
  scale_color_brewer(palette = "Dark2") +
  labs(y = expression(Delta * C[ant] ~ bias ~ ("%")),
       title = "Model-based assesment") +
  theme(axis.title.x = element_blank()) +
  geom_point(aes(period, dcant_bias_rel, col = MLR_basins),
             alpha = 0.7) +
    theme(axis.text.x = element_text(angle = 45, hjust=1),
        axis.title.x = element_blank()) +
  facet_grid(. ~ basin_AIP) +
  theme(
  strip.background = element_blank(),
  strip.text.x = element_blank()
)

p_regional_bias

Past versions of cases_bias-3.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

3.3 Slab budgets

3.3.1 Absolute values

dcant_slab_budget_all %>%
  filter(data_source == "obs",
         period != "1994 - 2014") %>% 
  ggplot(aes(MLR_basins, dcant, fill = gamma_slab)) +
  geom_hline(yintercept = 0, col = "red") +
  geom_col() +
  scale_fill_scico_d(direction = -1) +
  facet_grid(basin_AIP ~ period)

Past versions of slab_budgets-1.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

dcant_slab_budget_all %>%
  filter(data_source == "obs",
         period != "1994 - 2014") %>%
  group_by(basin_AIP) %>%
  group_split() %>%
  map(
    ~ ggplot(data = .x,
             aes(MLR_basins, dcant, fill = gamma_slab)) +
      geom_hline(yintercept = 0) +
      geom_col() +
      scale_fill_scico_d(direction = -1) +
      labs(title = paste("data_source:", unique(.x$basin_AIP))) +
      facet_grid(gamma_slab ~ period)
  )

[[1]]

Past versions of slab_budgets_individual-1.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

[[2]]

Past versions of slab_budgets_individual-2.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

[[3]]

Past versions of slab_budgets_individual-3.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

3.3.2 Bias

dcant_slab_budget_bias_all %>%
  filter(period != "1994 - 2014") %>%
  group_by(basin_AIP) %>%
  group_split() %>%
  # head(1) %>% 
  map(
    ~ ggplot(data = .x,
             aes(gamma_slab, dcant_bias, fill = gamma_slab)) +
      geom_col() +
      coord_flip() +
      scale_x_discrete(limits = rev) +
      scale_fill_scico_d(direction = -1) +
      facet_grid(period ~ MLR_basins) +
      labs(title = paste("data_source:", unique(.x$basin_AIP)))
    )

[[1]]

Warning: Removed 48 rows containing missing values (position_stack).

Past versions of slab_budgets_bias-1.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

[[2]]

Warning: Removed 24 rows containing missing values (position_stack).

Past versions of slab_budgets_bias-2.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

[[3]]

Warning: Removed 108 rows containing missing values (position_stack).

Past versions of slab_budgets_bias-3.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

3.3.3 Spread

dcant_slab_budget_all %>%
  filter(period != "1994 - 2014",
         data_source != "mod_truth") %>%
  group_by(data_source, basin_AIP, gamma_slab, period) %>%
  summarise(dcant_range = max(dcant) - min(dcant)) %>%
  ungroup() %>%
  group_split(basin_AIP) %>%
  # head(1) %>%
  map(
    ~ ggplot(data = .x,
             aes(gamma_slab, dcant_range, fill = gamma_slab)) +
      geom_col() +
      coord_flip() +
      scale_x_discrete(limits = rev) +
      scale_fill_scico_d(direction = -1) +
      facet_grid(period ~ data_source) +
      labs(title = paste("data_source:", unique(.x$basin_AIP)))
  )

`summarise()` has grouped output by 'data_source', 'basin_AIP', 'gamma_slab'.
You can override using the `.groups` argument.

[[1]]

Past versions of slab_budgets_spread-1.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

[[2]]

Past versions of slab_budgets_spread-2.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

[[3]]

Past versions of slab_budgets_spread-3.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

3.4 Basins hemisphere

3.4.1 Absoulte values

dcant_budget_basin_MLR_all %>%
  ggplot(aes(period, dcant, col = MLR_basins)) +
  geom_jitter(width = 0.05, height = 0) +
  scale_color_brewer(palette = "Dark2") +
  facet_grid(basin ~ data_source) +
  ylim(0,NA) +
  theme(axis.text.x = element_text(angle = 45, hjust=1),
        axis.title.x = element_blank())

Past versions of cases_absolute_basins_hemisphere-1.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

3.4.2 Biases

dcant_budget_basin_MLR_bias_all <-
  dcant_budget_basin_MLR_all %>%
  filter(data_source %in% c("mod", "mod_truth")) %>%
  pivot_wider(names_from = data_source,
              values_from = dcant) %>%
  mutate(dcant_bias = mod - mod_truth,
         dcant_bias_rel = 100*(mod - mod_truth)/mod_truth)
  
dcant_budget_basin_MLR_bias_all %>%   
  ggplot(aes(period, dcant_bias, col=MLR_basins)) +
  geom_hline(yintercept = 0) +
  geom_point() +
  facet_grid(basin ~ .)

Past versions of cases_bias_basins_hemisphere-1.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29

dcant_budget_basin_MLR_bias_all %>%
  ggplot() +
  geom_tile(aes(y = 0, height = regional_bias_rel_max * 2,
                x = "2004 - 2014", width = Inf,
                fill = "bias\nthreshold"), alpha = 0.5) +
  geom_hline(yintercept = 0) +
  scale_fill_manual(values = "grey70", name = "") +
  scale_color_brewer(palette = "Dark2") +
  labs(y = expression(Delta ~ C[ant] ~ bias)) +
  theme(axis.title.x = element_blank()) +
  geom_jitter(aes(period, dcant_bias_rel, col = MLR_basins),
              width = 0.05, height = 0) +
  facet_grid(. ~ basin)

Past versions of cases_bias_basins_hemisphere-2.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29

p_regional_bias <- 
  dcant_budget_basin_MLR_bias_all %>%
  ggplot() +
  geom_hline(yintercept = regional_bias_rel_max * c(-1,1),
             linetype = 2) +
  geom_hline(yintercept = 0) +
  scale_color_brewer(palette = "Dark2") +
  labs(y = expression(Delta * C[ant] ~ bias ~ ("%")),
       title = "Model-based assesment") +
  theme(axis.title.x = element_blank()) +
  geom_point(aes(period, dcant_bias_rel, col = MLR_basins),
             alpha = 0.7) +
    theme(axis.text.x = element_text(angle = 45, hjust=1),
        axis.title.x = element_blank()) +
  facet_grid(. ~ basin) +
  theme(
  strip.background = element_blank(),
  strip.text.x = element_blank()
)

p_regional_bias

Past versions of cases_bias_basins_hemisphere-3.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29

dcant_budget_basin_MLR_bias_all %>%
  group_by(period, basin) %>%
  summarise(
    dcant_bias_sd = sd(dcant_bias),
    dcant_bias = mean(dcant_bias),
    dcant_bias_rel_sd = sd(dcant_bias_rel),
    dcant_bias_rel = mean(dcant_bias_rel)
  ) %>%
  ungroup() %>%
  kable() %>%
  kable_styling() %>%
  scroll_box(height = "300px")

`summarise()` has grouped output by 'period'. You can override using the
`.groups` argument.

period	basin	dcant_bias_sd	dcant_bias	dcant_bias_rel_sd	dcant_bias_rel
1994 - 2004	Indian	1.0147980	0.2151667	21.049533	4.4631128
1994 - 2004	N_Atlantic	0.2356908	0.1921667	12.080514	9.8496498
1994 - 2004	N_Pacific	0.1749248	0.4385000	6.440532	16.1450663
1994 - 2004	S_Atlantic	0.2903191	0.1430000	11.612765	5.7200000
1994 - 2004	S_Pacific	0.8268445	0.3995000	14.629238	7.0682944
1994 - 2014	Indian	1.3112811	0.7710000	12.550546	7.3794028
1994 - 2014	N_Atlantic	0.3471959	-0.0178333	8.081840	-0.4151148
1994 - 2014	N_Pacific	0.2746004	0.6011667	4.703672	10.2974763
1994 - 2014	S_Atlantic	0.3544143	0.5123333	6.700969	9.6867713
1994 - 2014	S_Pacific	1.3024504	0.9006667	10.339370	7.1498505
2004 - 2014	Indian	0.5333816	0.5115000	9.480654	9.0917170
2004 - 2014	N_Atlantic	0.1795012	-0.1026667	7.654634	-4.3781095
2004 - 2014	N_Pacific	0.2108703	0.1966667	6.754333	6.2993807
2004 - 2014	S_Atlantic	0.2106119	0.4398333	7.551520	15.7702880
2004 - 2014	S_Pacific	0.5006090	0.4618333	7.208193	6.6498680

4 Ensemble

4.1 Global

dcant_budget_global_all_in <- dcant_budget_global_all %>% 
  filter(data_source %in% c("mod", "obs"))

dcant_budget_global_ensemble <- dcant_budget_global_all_in %>% 
  group_by(data_source, period, tref2) %>% 
  summarise(dcant_mean = mean(dcant),
            dcant_sd = sd(dcant),
            dcant_range = max(dcant)- min(dcant)) %>% 
  ungroup()

`summarise()` has grouped output by 'data_source', 'period'. You can override
using the `.groups` argument.

4.1.1 Mean

legend_title = expression(Delta * C[ant]~(PgC))

ggplot() +
  geom_col(data = dcant_budget_global_ensemble,
           aes(x = period,
               y = dcant_mean),
           fill = "darkgrey") +
  geom_errorbar(
    data = dcant_budget_global_ensemble,
    aes(
      x = period,
      y = dcant_mean,
      ymax = dcant_mean + dcant_sd,
      ymin = dcant_mean - dcant_sd
    ),
    width = 0.1
  ) +
  geom_point(
    data = dcant_budget_global_all,
    aes(period, dcant, col = MLR_basins),
    alpha = 0.7,
    position = position_jitter(width = 0.2, height = 0)
  ) +
  scale_y_continuous(limits = c(0,70), expand = c(0,0)) +
  scale_color_brewer(palette = "Dark2") +
  facet_grid(. ~ data_source) +
  labs(y = legend_title) +
  theme(axis.text.x = element_text(angle = 45, hjust=1),
        axis.title.x = element_blank())

Past versions of ensemble_mean_global-1.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

p_global_dcant <- ggplot() +
  geom_col(data = dcant_budget_global_ensemble %>% 
             filter(data_source == "obs"),
           aes(x = period,
               y = dcant_mean),
           fill = "darkgrey") +
    geom_point(
    data = dcant_budget_global_all %>% 
             filter(data_source == "obs"),
    aes(period, dcant, col = MLR_basins),
    alpha = 0.7,
    position = position_jitter(width = 0.1, height = 0)
  ) +
  geom_errorbar(
    data = dcant_budget_global_ensemble %>% 
             filter(data_source == "obs"),
    aes(
      x = period,
      y = dcant_mean,
      ymax = dcant_mean + dcant_sd,
      ymin = dcant_mean - dcant_sd
    ),
    width = 0.1
  ) +
  scale_y_continuous(limits = c(0,70), expand = c(0,0)) +
  scale_color_brewer(palette = "Dark2") +
  labs(y = legend_title,
       title = "Observation-based results") +
  theme(axis.text.x = element_blank(),
        axis.title.x = element_blank())

p_global_dcant_bias <-
p_global_dcant / p_global_bias +
  plot_layout(guides = 'collect',
              heights = c(2,1))

p_global_dcant_bias

Past versions of ensemble_mean_global-2.png

Version	Author	Date
b44c72a	jens-daniel-mueller	2022-07-03
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

# ggsave(plot = p_global_dcant_bias,
#        path = here::here("output/publication"),
#        filename = "Fig_global_dcant_budget.png",
#        height = 5,
#        width = 5)

rm(p_global_bias, p_global_dcant, p_global_dcant_bias)

4.1.2 Mean vs atm CO2

dcant_ensemble <- dcant_budget_global_ensemble %>% 
  filter(data_source == "obs",
         period != "1994 - 2014") %>% 
  select(year = tref2, dcant_mean, dcant_sd)

tcant_S04 <- bind_cols(year = 1994, dcant_mean = 118, dcant_sd = 19)

tcant_ensemble <- full_join(dcant_ensemble, tcant_S04)

Joining, by = c("year", "dcant_mean", "dcant_sd")

tcant_ensemble <- left_join(tcant_ensemble, co2_atm)

Joining, by = "year"

co2_atm_pi <- bind_cols(pCO2 = 280, dcant_mean = 0, year = 1750, dcant_sd = 0)

tcant_ensemble <- full_join(tcant_ensemble, co2_atm_pi)

Joining, by = c("year", "dcant_mean", "dcant_sd", "pCO2")

tcant_ensemble <- tcant_ensemble %>% 
  arrange(year) %>% 
  mutate(tcant = cumsum(dcant_mean),
         tcant_sd = cumsum(dcant_sd))

tcant_ensemble %>% 
  ggplot(aes(pCO2, tcant, ymin = tcant - tcant_sd, ymax = tcant + tcant_sd)) +
  geom_ribbon(fill = "grey80") +
  geom_point() +
  geom_line() +
  scale_x_continuous(breaks = seq(280, 400, 30),
                     sec.axis = dup_axis(labels =  c(1750, 1940, 1980, 2000, 2015),
                                         name = "Year")) +
  geom_text(aes(label = year), nudge_x = -5, nudge_y = 5) +
  labs(x = expression(Atmospheric~pCO[2]~(µatm)),
       y = expression(Total~oceanic~C[ant]~(PgC)))

Past versions of mean_tcant_over_atm_co2-1.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

# ggsave(path = "output/publication",
#        filename = "Fig_global_dcant_budget_vs_atm_pCO2.png",
#        height = 4,
#        width = 7)

4.1.3 Sum decades

dcant_budget_global_all_in_sum <-
  dcant_budget_global_all_in %>%
  filter(period != "1994 - 2014") %>%
  arrange(tref1) %>%
  group_by(data_source, MLR_basins) %>%
  mutate(dcant = dcant + lag(dcant)) %>% 
  ungroup() %>%
  drop_na() %>% 
  mutate(estimate = "sum")

dcant_budget_global_all_in_sum <-
  bind_rows(
    dcant_budget_global_all_in_sum,
    dcant_budget_global_all_in %>%
      filter(period == "1994 - 2014") %>%
      mutate(estimate = "direct")
  )

ggplot() +
  geom_point(
    data = dcant_budget_global_all_in_sum,
    aes(estimate, dcant, col = MLR_basins),
    alpha = 0.7,
    position = position_jitter(width = 0, height = 0)
  ) +
  scale_y_continuous(limits = c(0,70), expand = c(0,0)) +
  scale_color_brewer(palette = "Dark2") +
  facet_grid(. ~ data_source) +
  theme(axis.text.x = element_text(angle = 45, hjust=1),
        axis.title.x = element_blank())

Past versions of summed_decades-1.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

4.1.4 Mean bias

dcant_budget_global_ensemble_bias <- full_join(
  dcant_budget_global_ensemble %>%
    filter(data_source == "mod") %>% 
    select(period, dcant_mean, dcant_sd),
  dcant_budget_global_all %>%
    filter(data_source == "mod_truth",
           MLR_basins == unique(dcant_budget_global_all$MLR_basins)[1]) %>% 
    select(period, dcant)
)

Joining, by = "period"

dcant_budget_global_ensemble_bias <- dcant_budget_global_ensemble_bias %>% 
  mutate(dcant_mean_bias = dcant_mean - dcant,
         dcant_mean_bias_rel = 100 * dcant_mean_bias / dcant)

dcant_budget_global_ensemble_bias %>%
  ggplot(aes(period, dcant_mean_bias)) +
  geom_hline(yintercept = 0) +
  geom_point()

Past versions of ensemble_mean_bias_global-1.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

dcant_budget_global_ensemble_bias %>%
  ggplot(aes(period, dcant_mean_bias_rel)) +
  geom_hline(yintercept = 0) +
  geom_point()

Past versions of ensemble_mean_bias_global-2.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

4.1.5 Vertical patterns

4.1.5.1 Absoulte values

dcant_budget_global_all_depth %>%
  filter(data_source != "mod_truth") %>% 
  group_by(data_source) %>%
  group_split() %>%
  # head(1) %>%
  map(
    ~  ggplot(data = .x,
              aes(dcant, MLR_basins, fill=period)) +
      geom_vline(xintercept = 0) +
      geom_col(position = "dodge") +
      scale_fill_brewer(palette = "Dark2") +
      facet_grid(inv_depth ~ .) +
      labs(title = paste("data_source:", unique(.x$data_source)))
  )

[[1]]

Past versions of cases_absolute_depth_global-1.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

[[2]]

Past versions of cases_absolute_depth_global-2.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

4.1.5.2 Biases

dcant_budget_global_bias_all_depth %>%
  ggplot(aes(dcant_bias, MLR_basins, fill = period)) +
  geom_vline(xintercept = 0) +
  geom_col(position = "dodge") +
  scale_fill_brewer(palette = "Dark2") +
  facet_grid(inv_depth ~ .)

Past versions of cases_bias_depth_global-1.png

Version	Author	Date
1aabfea	jens-daniel-mueller	2022-07-12
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

dcant_budget_global_bias_all_depth %>%
  ggplot(aes(dcant_bias_rel, MLR_basins, fill = period)) +
  geom_vline(xintercept = 0) +
  geom_col(position = "dodge") +
  scale_fill_brewer(palette = "Dark2") +
  facet_grid(inv_depth ~ .)

Past versions of cases_bias_rel_depth_global-1.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

rm(dcant_budget_global_all,
   dcant_budget_global_all_depth,
   dcant_budget_global_bias_all,
   dcant_budget_global_bias_all_depth,
   dcant_budget_global_ensemble,
   dcant_budget_global_ensemble_bias)

4.2 Basins

dcant_budget_basin_AIP_ensemble <- dcant_budget_basin_AIP_all %>% 
  filter(data_source %in% c("mod", "obs")) %>% 
  group_by(basin_AIP, data_source, period) %>% 
  summarise(dcant_mean = mean(dcant),
            dcant_sd = sd(dcant),
            dcant_range = max(dcant)- min(dcant)) %>% 
  ungroup()

`summarise()` has grouped output by 'basin_AIP', 'data_source'. You can override
using the `.groups` argument.

4.2.1 Mean

dcant_budget_basin_AIP_ensemble %>%
  ggplot(aes(period, dcant_mean, col=basin_AIP)) +
  geom_pointrange(aes(ymax = dcant_mean + dcant_sd,
                      ymin = dcant_mean - dcant_sd),
                  shape = 21) +
  facet_grid(. ~ data_source)

Past versions of ensemble_mean-1.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

p_regional_dcant <- ggplot() +
  geom_col(
    data = dcant_budget_basin_AIP_ensemble %>%
      filter(data_source == "obs"),
    aes(x = period,
        y = dcant_mean),
    fill = "darkgrey"
  ) +
  geom_point(
    data = dcant_budget_basin_AIP_all %>%
      filter(data_source == "obs"),
    aes(period, dcant, col = MLR_basins),
    position = position_jitter(width = 0.1, height = 0),
    alpha = 0.7
  ) +
  geom_errorbar(
    data = dcant_budget_basin_AIP_ensemble %>%
      filter(data_source == "obs"),
    aes(
      x = period,
      y = dcant_mean,
      ymax = dcant_mean + dcant_sd,
      ymin = dcant_mean - dcant_sd
    ),
    width = 0.1
  ) +
  scale_y_continuous(limits = c(0, 35), expand = c(0, 0)) +
  scale_color_brewer(palette = "Dark2") +
  labs(y = legend_title,
       title = "Observation-based results") +
  theme(axis.text.x = element_blank(),
        axis.title.x = element_blank()) +
  facet_grid(. ~ basin_AIP)

p_regional_dcant_bias <-
p_regional_dcant / p_regional_bias +
  plot_layout(guides = 'collect',
              heights = c(2,1))

p_regional_dcant_bias

Past versions of ensemble_mean-2.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

# ggsave(plot = p_regional_dcant_bias,
#        path = "output/publication",
#        filename = "Fig_regional_dcant_budget.png",
#        height = 5,
#        width = 10)

rm(p_regional_bias, p_regional_dcant, p_regional_dcant_bias)

4.2.2 Mean bias

dcant_budget_basin_AIP_ensemble_bias <- full_join(
  dcant_budget_basin_AIP_ensemble %>%
    filter(data_source == "mod") %>% 
    select(basin_AIP, period, dcant_mean, dcant_sd),
  dcant_budget_basin_AIP_all %>%
    filter(data_source == "mod_truth",
           MLR_basins == unique(dcant_budget_basin_AIP_all$MLR_basins)[1]) %>% 
    select(basin_AIP, period, dcant)
)

Joining, by = c("basin_AIP", "period")

dcant_budget_basin_AIP_ensemble_bias <- dcant_budget_basin_AIP_ensemble_bias %>% 
  mutate(dcant_mean_bias = dcant_mean - dcant,
         dcant_mean_bias_rel = 100 * dcant_mean_bias / dcant)


dcant_budget_basin_AIP_ensemble_bias %>%
  ggplot(aes(period, dcant_mean_bias, col = basin_AIP)) +
  geom_hline(yintercept = 0) +
  geom_point()

Past versions of ensemble_mean_bias-1.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

dcant_budget_basin_AIP_ensemble_bias %>%
  ggplot(aes(period, dcant_mean_bias_rel, col = basin_AIP)) +
  geom_hline(yintercept = 0) +
  geom_point()

Past versions of ensemble_mean_bias-2.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

4.2.3 Vertical patterns

4.2.3.1 Absoulte values

dcant_budget_basin_AIP_all_depth %>%
  filter(data_source != "mod_truth") %>%
  group_by(data_source) %>%
  group_split() %>%
  # head(1) %>%
  map(
    ~  ggplot(data = .x,
              aes(dcant, MLR_basins, fill = basin_AIP)) +
      geom_vline(xintercept = 0) +
      geom_col() +
      scale_fill_brewer(palette = "Dark2") +
      facet_grid(inv_depth ~ period) +
      labs(title = paste("data_source:", unique(.x$data_source)))
  )

[[1]]

Past versions of cases_absolute_depth-1.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

[[2]]

Past versions of cases_absolute_depth-2.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

4.2.3.2 Biases

dcant_budget_basin_AIP_bias_all_depth %>%
  ggplot(aes(dcant_bias, MLR_basins, fill = basin_AIP)) +
  geom_vline(xintercept = 0) +
  geom_col() +
  scale_fill_brewer(palette = "Dark2") +
  facet_grid(inv_depth ~ period)

Past versions of cases_bias_depth-1.png

Version	Author	Date
1aabfea	jens-daniel-mueller	2022-07-12
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

dcant_budget_basin_AIP_bias_all_depth %>%
  ggplot(aes(dcant_bias_rel, MLR_basins, fill = basin_AIP)) +
  geom_vline(xintercept = 0) +
  geom_col(position = "dodge") +
  scale_fill_brewer(palette = "Dark2") +
  facet_grid(inv_depth ~ period)

Past versions of cases_bias_rel_depth-1.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

5 Steady state

dcant_obs_budget_all %>%
  group_by(inv_depth) %>%
  group_split() %>%
  # head(1) %>% 
  map(
    ~ ggplot(data = .x,
             aes(estimate, dcant_pos, fill = basin_AIP)) +
      scale_fill_brewer(palette = "Dark2") +
      geom_col() +
      facet_grid(MLR_basins ~ period) +
      labs(title = paste("inventory depth:",unique(.x$inv_depth)))
  )

[[1]]

Past versions of steady_state_comparison-1.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

[[2]]

Past versions of steady_state_comparison-2.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

[[3]]

Past versions of steady_state_comparison-3.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

[[4]]

Past versions of steady_state_comparison-4.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

[[5]]

Past versions of steady_state_comparison-5.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

6 Predictor analysis

lm_best_predictor_counts_all <-
  full_join(lm_best_predictor_counts_all,
            params_local_all)

Joining, by = "Version_ID"

lm_best_predictor_counts_all <- lm_best_predictor_counts_all %>% 
  mutate(n_predictors_total = rowSums(across(aou:temp), na.rm = TRUE)/10)

lm_best_predictor_counts_all %>%
  ggplot(aes(x = MLR_basins, y = n_predictors_total)) +
  # ggdist::stat_halfeye(
  #   adjust = .5,
  #   width = .6,
  #   .width = 0,
  #   justification = -.2,
  #   point_colour = NA
  # ) +
  geom_boxplot(width = 0.5,
               outlier.shape = NA) +
  gghalves::geom_half_point(
    side = "l",
    range_scale = .4,
    alpha = .5,
    aes(col = gamma_slab)
  ) +
  scale_color_viridis_d() +
  facet_grid(basin ~ data_source)

Past versions of predictor_analysis-1.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

lm_best_predictor_counts_all %>%
  pivot_longer(aou:temp,
               names_to = "predictor",
               values_to = "count") %>%
  group_split(predictor) %>%
  # head(1) %>%
  map(
    ~ ggplot(data = .x,
             aes(MLR_basins, count, color = gamma_slab)) +
      geom_jitter(alpha = 0.5) +
      scale_color_viridis_d() +
      labs(title = paste0("predictor:", unique(.x$predictor))) +
      coord_cartesian(ylim = c(0, 10)) +
      facet_grid(basin ~ data_source)
  )

[[1]]

Warning: Removed 2 rows containing missing values (geom_point).

Past versions of predictor_analysis-2.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

[[2]]

Warning: Removed 40 rows containing missing values (geom_point).

Past versions of predictor_analysis-3.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

[[3]]

Warning: Removed 2 rows containing missing values (geom_point).

Past versions of predictor_analysis-4.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

[[4]]

Warning: Removed 6 rows containing missing values (geom_point).

Past versions of predictor_analysis-5.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

[[5]]

Past versions of predictor_analysis-6.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

[[6]]

Warning: Removed 3 rows containing missing values (geom_point).

Past versions of predictor_analysis-7.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

[[7]]

Warning: Removed 3 rows containing missing values (geom_point).

Past versions of predictor_analysis-8.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

lm_best_dcant_all <-
  full_join(lm_best_dcant_all,
            params_local_all)

Joining, by = "Version_ID"

lm_best_dcant_all %>%
  count(basin, data_source, gamma_slab, MLR_basins, period) %>%
  ggplot(aes(MLR_basins, n)) +
  geom_jitter(height = 0, alpha = 0.3) +
  facet_grid(basin ~ data_source)

Past versions of predictor_analysis-9.png

Version	Author	Date
1ada20c	jens-daniel-mueller	2022-06-29
a13a7cf	jens-daniel-mueller	2022-06-28

7 Drift and bias

dcant_budget_global_all_dissic %>%
  filter(estimate == "dcant") %>%
  ggplot(aes(inv_depth, value, col = !!sym(config))) +
  geom_hline(yintercept = 0) +
  scale_color_brewer(palette = "Dark2") +
  geom_point() +
  geom_path() +
  labs(y = "DIC change (PgC)") +
  facet_grid(data_source ~ period, scales = "free_y")

Past versions of drift_bias_plots-1.png

Version	Author	Date
1aabfea	jens-daniel-mueller	2022-07-12

dcant_budget_global_bias_all_decomposition <-
  dcant_budget_global_bias_all_decomposition %>%
  filter(estimate == "dcant") %>%
  select(inv_depth, dcant_bias, contribution, !!sym(config), period) %>%
  pivot_wider(names_from = contribution,
              values_from = dcant_bias)

dcant_budget_global_bias_all_decomposition <-
  full_join(
    dcant_budget_global_bias_all_decomposition,
    dcant_budget_global_bias_all_depth %>%
      select(inv_depth, !!sym(config), period, mod_truth)
  )

Joining, by = c("inv_depth", "MLR_basins", "period")

dcant_budget_global_bias_all_decomposition %>%
  ggplot(aes(`dcant offset`, `delta C* - mod_truth`, col = !!sym(config))) +
  geom_vline(xintercept = 0, col = "grey50") +
  geom_hline(yintercept = 0, col = "grey50") +
  geom_abline(intercept = 0, slope = 1) +
  geom_point() +
  coord_fixed() +
  scale_color_brewer(palette = "Dark2") +
  facet_grid(inv_depth ~ period)

Past versions of drift_bias_plots-2.png

Version	Author	Date
1aabfea	jens-daniel-mueller	2022-07-12

dcant_budget_global_bias_all_decomposition %>%
  ggplot(aes(`dcant offset`, `C* prediction error`, col = !!sym(config))) +
  geom_vline(xintercept = 0, col = "grey50") +
  geom_hline(yintercept = 0, col = "grey50") +
  geom_abline(intercept = 0, slope = 1) +
  geom_point() +
  coord_fixed() +
  scale_color_brewer(palette = "Dark2") +
  facet_grid(inv_depth ~ period)

Past versions of drift_bias_plots-3.png

Version	Author	Date
1aabfea	jens-daniel-mueller	2022-07-12

dcant_budget_global_bias_all_decomposition %>%
  ggplot(aes(
    `dcant offset`,
    `C* prediction error` + `delta C* - mod_truth`,
    col = !!sym(config)
  )) +
  geom_vline(xintercept = 0, col = "grey50") +
  geom_hline(yintercept = 0, col = "grey50") +
  geom_abline(intercept = 0, slope = 1) +
  geom_point() +
  coord_fixed() +
  scale_color_brewer(palette = "Dark2") +
  facet_grid(inv_depth ~ period)

Past versions of drift_bias_plots-4.png

Version	Author	Date
1aabfea	jens-daniel-mueller	2022-07-12

dcant_budget_global_bias_all_decomposition %>%
  ggplot(aes(`dcant offset`, `C* drift`, col = !!sym(config))) +
  geom_vline(xintercept = 0, col = "grey50") +
  geom_hline(yintercept = 0, col = "grey50") +
  geom_abline(intercept = 0, slope = 1) +
  geom_point() +
  coord_fixed() +
  scale_color_brewer(palette = "Dark2") +
  facet_grid(inv_depth ~ period)

Past versions of drift_bias_plots-5.png

Version	Author	Date
1aabfea	jens-daniel-mueller	2022-07-12

dcant_budget_global_bias_all_decomposition %>%
  ggplot(aes(
    `dcant offset` - `C* drift`,
    `C* prediction error`,
    col = !!sym(config)
  )) +
  geom_vline(xintercept = 0, col = "grey50") +
  geom_hline(yintercept = 0, col = "grey50") +
  geom_abline(intercept = 0, slope = 1) +
  geom_point() +
  coord_fixed() +
  scale_color_brewer(palette = "Dark2") +
  facet_grid(inv_depth ~ period)

Past versions of drift_bias_plots-6.png

Version	Author	Date
1aabfea	jens-daniel-mueller	2022-07-12

dcant_budget_global_bias_all_decomposition %>%
  ggplot(aes(
    x = period,
    fill = !!sym(config),
    col = !!sym(config)
  )) +
  geom_hline(yintercept = 0) +
  geom_point(
    aes(y = `dcant offset`, shape = "dcant offset"),
    position = position_nudge(x = -0.05),
    alpha = 0.5
  ) +
  geom_point(
    aes(y = `dcant offset` - `C* drift`, shape = "dcant offset - C* drift"),
    position = position_nudge(x = 0.05),
    alpha = 0.5
  ) +
  scale_color_brewer(palette = "Dark2") +
  scale_fill_brewer(palette = "Dark2") +
  scale_shape_manual(values = c(21,23)) +
  facet_grid(inv_depth ~ .)

Past versions of drift_bias_plots-7.png

Version	Author	Date
1aabfea	jens-daniel-mueller	2022-07-12

dcant_budget_global_bias_all_decomposition <-
  dcant_budget_global_bias_all_decomposition %>%
  mutate(
    `dcant offset rel` = 100 * `dcant offset` / mod_truth,
    `dcant offset rel corr` = 100 * (`dcant offset` - `C* drift`) / mod_truth,
    `C* prediction error rel` = 100 * (`C* prediction error`) / mod_truth
  )

dcant_budget_global_bias_all_decomposition %>%
  ggplot(aes(
    x = period,
    fill = !!sym(config),
    col = !!sym(config)
  )) +
  geom_hline(yintercept = 0) +
  geom_point(
    aes(y = `dcant offset rel`, shape = "dcant offset"),
    position = position_nudge(x = -0.05),
    alpha = 0.5
  ) +
  geom_point(
    aes(y = `dcant offset rel corr`, shape = "dcant offset - C* drift"),
    position = position_nudge(x = 0.05),
    alpha = 0.5
  ) +
  scale_color_brewer(palette = "Dark2") +
  scale_fill_brewer(palette = "Dark2") +
  scale_shape_manual(values = c(21,23)) +
  facet_grid(inv_depth ~ .)

Past versions of drift_bias_plots-8.png

Version	Author	Date
1aabfea	jens-daniel-mueller	2022-07-12

dcant_budget_global_bias_all_decomposition <-
  dcant_budget_global_bias_all_decomposition %>%
  pivot_longer(-c(inv_depth:period),
               names_to = "estimate",
               values_to = "value")


dcant_budget_global_bias_all_decomposition %>%
  group_by(inv_depth, estimate) %>%
  summarise(mean = mean(value),
            sd = sd(value)) %>%
  ungroup() %>%
  kable() %>%
  kable_styling() %>%
  scroll_box(height = "300px")

`summarise()` has grouped output by 'inv_depth'. You can override using the
`.groups` argument.

inv_depth	estimate	mean	sd
100	C* drift	0.2033333	0.0740032
100	C* prediction error	-0.2322778	0.3384155
100	C* prediction error rel	-4.3434891	8.1847996
100	dcant offset	0.3205556	0.1266836
100	dcant offset rel	6.9268026	2.2491496
100	dcant offset rel corr	2.6347359	2.0418623
100	delta C* - mod_truth	-0.3946667	0.2164184
100	mod_truth	4.7563333	1.7425592
500	C* drift	1.3446667	0.4893907
500	C* prediction error	-1.2756111	0.9510696
500	C* prediction error rel	-7.2903972	4.9678533
500	dcant offset	0.4997778	0.6739486
500	dcant offset rel	3.1753691	4.4458300
500	dcant offset rel corr	-4.7909964	4.0633997
500	delta C* - mod_truth	0.3773333	0.1374833
500	mod_truth	16.9600000	6.2242462
1000	C* drift	3.1486667	1.1458415
1000	C* prediction error	-2.9285000	1.5914159
1000	C* prediction error rel	-12.7692887	5.1684996
1000	dcant offset	0.5565000	1.0482128
1000	dcant offset rel	2.5751837	4.9419157
1000	dcant offset rel corr	-11.3338859	4.6745567
1000	delta C* - mod_truth	2.0866667	0.7598902
1000	mod_truth	22.7516667	8.3557301
3000	C* drift	3.9900000	1.4521475
3000	C* prediction error	-2.1292222	1.4864104
3000	C* prediction error rel	-8.2918267	5.2696739
3000	dcant offset	1.8872778	1.4647512
3000	dcant offset rel	7.4318932	5.6581990
3000	dcant offset rel corr	-8.2122513	5.7444024
3000	delta C* - mod_truth	2.6026667	0.9469936
3000	mod_truth	25.6453333	9.4254881
10000	C* drift	3.3760000	1.2289476
10000	C* prediction error	-1.0022778	1.8400104
10000	C* prediction error rel	-3.7916822	7.3941292
10000	dcant offset	2.1658889	2.0354594
10000	dcant offset rel	8.4223151	7.9582951
10000	dcant offset rel corr	-4.6165610	7.9922584
10000	delta C* - mod_truth	1.7546667	0.6384472
10000	mod_truth	26.0420000	9.5725748

dcant_budget_global_bias_all_decomposition %>%
  group_by(inv_depth, estimate, period) %>%
  summarise(mean = mean(value),
            sd = sd(value)) %>%
  ungroup() %>%
  kable() %>%
  kable_styling() %>%
  scroll_box(height = "300px")

`summarise()` has grouped output by 'inv_depth', 'estimate'. You can override
using the `.groups` argument.

inv_depth	estimate	period	mean	sd
100	C* drift	1994 - 2004	0.1550000	0.0000000
100	C* drift	1994 - 2014	0.3050000	0.0000000
100	C* drift	2004 - 2014	0.1500000	0.0000000
100	C* prediction error	1994 - 2004	0.1246667	0.1905683
100	C* prediction error	1994 - 2014	-0.3890000	0.2399608
100	C* prediction error	2004 - 2014	-0.4325000	0.2549814
100	C* prediction error rel	1994 - 2004	3.7561515	5.7417377
100	C* prediction error rel	1994 - 2014	-5.4527614	3.3636225
100	C* prediction error rel	2004 - 2014	-11.3338574	6.6819018
100	dcant offset	1994 - 2004	0.3001667	0.0583144
100	dcant offset	1994 - 2014	0.4593333	0.0655856
100	dcant offset	2004 - 2014	0.2021667	0.0802158
100	dcant offset rel	1994 - 2004	9.0438887	1.7569864
100	dcant offset rel	1994 - 2014	6.4386506	0.9193379
100	dcant offset rel	2004 - 2014	5.2978686	2.1020899
100	dcant offset rel corr	1994 - 2004	4.3738074	1.7569864
100	dcant offset rel corr	1994 - 2014	2.1633492	0.9193379
100	dcant offset rel corr	2004 - 2014	1.3670510	2.1020899
100	delta C* - mod_truth	1994 - 2004	-0.4900000	0.0000000
100	delta C* - mod_truth	1994 - 2014	-0.5910000	0.0000000
100	delta C* - mod_truth	2004 - 2014	-0.1030000	0.0000000
100	mod_truth	1994 - 2004	3.3190000	0.0000000
100	mod_truth	1994 - 2014	7.1340000	0.0000000
100	mod_truth	2004 - 2014	3.8160000	0.0000000
500	C* drift	1994 - 2004	1.0250000	0.0000000
500	C* drift	1994 - 2014	2.0170000	0.0000000
500	C* drift	2004 - 2014	0.9920000	0.0000000
500	C* prediction error	1994 - 2004	-0.4716667	0.6100238
500	C* prediction error	1994 - 2014	-1.9708333	0.9859741
500	C* prediction error	2004 - 2014	-1.3843333	0.6011338
500	C* prediction error rel	1994 - 2004	-4.0158933	5.1939023
500	C* prediction error rel	1994 - 2014	-7.7469864	3.8756844
500	C* prediction error rel	2004 - 2014	-10.1083120	4.3894401
500	dcant offset	1994 - 2004	0.8023333	0.4956485
500	dcant offset	1994 - 2014	0.7103333	0.7857095
500	dcant offset	2004 - 2014	-0.0133333	0.4497865
500	dcant offset rel	1994 - 2004	6.8312757	4.2200812
500	dcant offset rel	1994 - 2014	2.7921908	3.0884809
500	dcant offset rel	2004 - 2014	-0.0973591	3.2843116
500	dcant offset rel corr	1994 - 2004	-1.8958422	4.2200812
500	dcant offset rel corr	1994 - 2014	-5.1362683	3.0884809
500	dcant offset rel corr	2004 - 2014	-7.3408787	3.2843116
500	delta C* - mod_truth	1994 - 2004	0.2920000	0.0000000
500	delta C* - mod_truth	1994 - 2014	0.5660000	0.0000000
500	delta C* - mod_truth	2004 - 2014	0.2740000	0.0000000
500	mod_truth	1994 - 2004	11.7450000	0.0000000
500	mod_truth	1994 - 2014	25.4400000	0.0000000
500	mod_truth	2004 - 2014	13.6950000	0.0000000
1000	C* drift	1994 - 2004	2.3950000	0.0000000
1000	C* drift	1994 - 2014	4.7230000	0.0000000
1000	C* drift	2004 - 2014	2.3280000	0.0000000
1000	C* prediction error	1994 - 2004	-1.8003333	1.1862788
1000	C* prediction error	1994 - 2014	-4.4323333	1.5790905
1000	C* prediction error	2004 - 2014	-2.5528333	0.5473490
1000	C* prediction error rel	1994 - 2004	-11.4670913	7.5559161
1000	C* prediction error rel	1994 - 2014	-12.9877614	4.6271001
1000	C* prediction error rel	2004 - 2014	-13.8530135	2.9702031
1000	dcant offset	1994 - 2004	0.7393333	1.1303528
1000	dcant offset	1994 - 2014	0.8136667	1.3995460
1000	dcant offset	2004 - 2014	0.1165000	0.3840941
1000	dcant offset rel	1994 - 2004	4.7091295	7.1996994
1000	dcant offset rel	1994 - 2014	2.3842314	4.1009934
1000	dcant offset rel	2004 - 2014	0.6321901	2.0842963
1000	dcant offset rel corr	1994 - 2004	-10.5456476	7.1996994
1000	dcant offset rel corr	1994 - 2014	-11.4552505	4.1009934
1000	dcant offset rel corr	2004 - 2014	-12.0007597	2.0842963
1000	delta C* - mod_truth	1994 - 2004	1.5570000	0.0000000
1000	delta C* - mod_truth	1994 - 2014	3.1310000	0.0000000
1000	delta C* - mod_truth	2004 - 2014	1.5720000	0.0000000
1000	mod_truth	1994 - 2004	15.7000000	0.0000000
1000	mod_truth	1994 - 2014	34.1270000	0.0000000
1000	mod_truth	2004 - 2014	18.4280000	0.0000000
3000	C* drift	1994 - 2004	3.0410000	0.0000000
3000	C* drift	1994 - 2014	5.9850000	0.0000000
3000	C* drift	2004 - 2014	2.9440000	0.0000000
3000	C* prediction error	1994 - 2004	-1.5741667	1.3534284
3000	C* prediction error	1994 - 2014	-3.2516667	1.6503151
3000	C* prediction error	2004 - 2014	-1.5618333	0.8299565
3000	C* prediction error rel	1994 - 2004	-8.9238473	7.6724969
3000	C* prediction error rel	1994 - 2014	-8.4529132	4.2900985
3000	C* prediction error rel	2004 - 2014	-7.4987197	3.9848112
3000	dcant offset	1994 - 2004	1.3883333	1.4930922
3000	dcant offset	1994 - 2014	2.7673333	1.7087494
3000	dcant offset	2004 - 2014	1.5061667	0.8620388
3000	dcant offset rel	1994 - 2004	7.8703704	8.4642414
3000	dcant offset rel	1994 - 2014	7.1938581	4.4420023
3000	dcant offset rel	2004 - 2014	7.2314513	4.1388460
3000	dcant offset rel corr	1994 - 2004	-9.3688587	8.4642414
3000	dcant offset rel corr	1994 - 2014	-8.3645281	4.4420023
3000	dcant offset rel corr	2004 - 2014	-6.9033673	4.1388460
3000	delta C* - mod_truth	1994 - 2004	1.9330000	0.0000000
3000	delta C* - mod_truth	1994 - 2014	3.9040000	0.0000000
3000	delta C* - mod_truth	2004 - 2014	1.9710000	0.0000000
3000	mod_truth	1994 - 2004	17.6400000	0.0000000
3000	mod_truth	1994 - 2014	38.4680000	0.0000000
3000	mod_truth	2004 - 2014	20.8280000	0.0000000
10000	C* drift	1994 - 2004	2.5830000	0.0000000
10000	C* drift	1994 - 2014	5.0640000	0.0000000
10000	C* drift	2004 - 2014	2.4810000	0.0000000
10000	C* prediction error	1994 - 2004	-0.7245000	1.9903519
10000	C* prediction error	1994 - 2014	-1.5965000	2.4232547
10000	C* prediction error	2004 - 2014	-0.6858333	1.0203081
10000	C* prediction error rel	1994 - 2004	-4.0470339	11.1180421
10000	C* prediction error rel	1994 - 2014	-4.0869877	6.2034527
10000	C* prediction error rel	2004 - 2014	-3.2410252	4.8216439
10000	dcant offset	1994 - 2004	1.6076667	2.1670401
10000	dcant offset	1994 - 2014	3.1500000	2.5464257
10000	dcant offset	2004 - 2014	1.7400000	1.0735058
10000	dcant offset rel	1994 - 2004	8.9803746	12.1050166
10000	dcant offset rel	1994 - 2014	8.0638968	6.5187662
10000	dcant offset rel	2004 - 2014	8.2226738	5.0730393
10000	dcant offset rel corr	1994 - 2004	-5.4481808	12.1050166
10000	dcant offset rel corr	1994 - 2014	-4.8997773	6.5187662
10000	dcant offset rel corr	2004 - 2014	-3.5017249	5.0730393
10000	delta C* - mod_truth	1994 - 2004	1.3030000	0.0000000
10000	delta C* - mod_truth	1994 - 2014	2.6320000	0.0000000
10000	delta C* - mod_truth	2004 - 2014	1.3290000	0.0000000
10000	mod_truth	1994 - 2004	17.9020000	0.0000000
10000	mod_truth	1994 - 2014	39.0630000	0.0000000
10000	mod_truth	2004 - 2014	21.1610000	0.0000000

Session information

sessionInfo()

R version 4.1.2 (2021-11-01)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: openSUSE Leap 15.3

Matrix products: default
BLAS:   /usr/local/R-4.1.2/lib64/R/lib/libRblas.so
LAPACK: /usr/local/R-4.1.2/lib64/R/lib/libRlapack.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] kableExtra_1.3.4 colorspace_2.0-2 marelac_2.1.10   shape_1.4.6     
 [5] ggforce_0.3.3    metR_0.11.0      scico_1.3.0      patchwork_1.1.1 
 [9] collapse_1.7.0   forcats_0.5.1    stringr_1.4.0    dplyr_1.0.7     
[13] purrr_0.3.4      readr_2.1.1      tidyr_1.1.4      tibble_3.1.6    
[17] ggplot2_3.3.5    tidyverse_1.3.1  workflowr_1.7.0 

loaded via a namespace (and not attached):
 [1] fs_1.5.2           gghalves_0.1.1     bit64_4.0.5        lubridate_1.8.0   
 [5] gsw_1.0-6          RColorBrewer_1.1-2 webshot_0.5.2      httr_1.4.2        
 [9] rprojroot_2.0.2    tools_4.1.2        backports_1.4.1    bslib_0.3.1       
[13] utf8_1.2.2         R6_2.5.1           DBI_1.1.2          withr_2.4.3       
[17] tidyselect_1.1.1   processx_3.5.2     bit_4.0.4          compiler_4.1.2    
[21] git2r_0.29.0       cli_3.1.1          rvest_1.0.2        xml2_1.3.3        
[25] labeling_0.4.2     sass_0.4.0         scales_1.1.1       checkmate_2.0.0   
[29] SolveSAPHE_2.1.0   callr_3.7.0        systemfonts_1.0.3  digest_0.6.29     
[33] svglite_2.0.0      rmarkdown_2.11     oce_1.5-0          pkgconfig_2.0.3   
[37] htmltools_0.5.2    highr_0.9          dbplyr_2.1.1       fastmap_1.1.0     
[41] rlang_1.0.2        readxl_1.3.1       rstudioapi_0.13    jquerylib_0.1.4   
[45] generics_0.1.1     farver_2.1.0       jsonlite_1.7.3     vroom_1.5.7       
[49] magrittr_2.0.1     Rcpp_1.0.8         munsell_0.5.0      fansi_1.0.2       
[53] lifecycle_1.0.1    stringi_1.7.6      whisker_0.4        yaml_2.2.1        
[57] MASS_7.3-55        grid_4.1.2         parallel_4.1.2     promises_1.2.0.1  
[61] crayon_1.4.2       haven_2.4.3        hms_1.1.1          seacarb_3.3.0     
[65] knitr_1.37         ps_1.6.0           pillar_1.6.4       reprex_2.0.1      
[69] glue_1.6.0         evaluate_0.14      getPass_0.2-2      data.table_1.14.2 
[73] modelr_0.1.8       vctrs_0.3.8        tzdb_0.2.0         tweenr_1.0.2      
[77] httpuv_1.6.5       cellranger_1.1.0   gtable_0.3.0       polyclip_1.10-0   
[81] assertthat_0.2.1   xfun_0.29          broom_0.7.11       later_1.3.0       
[85] viridisLite_0.4.0  ellipsis_0.3.2     here_1.0.1