Last updated: 2020-11-27
Checks: 7 0
Knit directory: emlr_obs_preprocessing/
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Unstaged changes:
Modified: analysis/_site.yml
Deleted: analysis/analysis_this_study.Rmd
Deleted: analysis/analysis_this_study_vs_Gruber_2019.Rmd
Deleted: analysis/child/setup.Rmd
Deleted: analysis/eMLR_assumption_testing.Rmd
Deleted: analysis/eMLR_data_preparation.Rmd
Deleted: analysis/eMLR_model_fitting.Rmd
Deleted: analysis/mapping_cant_calculation.Rmd
Deleted: analysis/mapping_cstar_calculation.Rmd
Deleted: analysis/mapping_predictor_preparation.Rmd
Deleted: code/README.md
Modified: code/Workflowr_project_managment.R
Deleted: code/biogeochemical_functions.R
Deleted: code/eda.R
Deleted: code/mapping_functions.R
Deleted: code/plotting_functions.R
Deleted: code/python_scripts/Gamma_GLODAP_python.py
Deleted: code/test_scripts/analysis_previous_studies.Rmd
Deleted: code/test_scripts/analysis_this_study_3d.Rmd
Deleted: code/test_scripts/model_nested_df.R
Deleted: code/test_scripts/raster_interpolation.R
Deleted: code/test_scripts/read_WOCE.Rmd
Deleted: code/test_scripts/read_World_Ocean_Atlas_2013_Clement.Rmd
Deleted: code/test_scripts/read_dclement_nc.Rmd
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| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | 2f37595 | jens-daniel-mueller | 2020-11-27 | first rebuild after splitting the preprocessing part |
| Rmd | 92e10aa | Jens Müller | 2020-11-27 | Initial commit |
| html | 92e10aa | Jens Müller | 2020-11-27 | Initial commit |
library(reticulate)Packages available on CRAN are not listed here.
Following packages need to be installed but are not available on CRAN:
Run the code below for installation from Github repositories.
remotes::install_github("moodymudskipper/cutr")Python code used in this project is stored in /code/python_scripts and sourced from there, when required in .Rmd files.
To install required python packages from within R-Studio, run the code below.
# the commands below must only be run once, when you first run the python code and need to install required packages
# not required on eth server, because packages are already installed
# py_install("pandas")
# py_install("numpy")
# py_install("shapely")
# py_install("math")
sessionInfo()R version 4.0.3 (2020-10-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: openSUSE Leap 15.1
Matrix products: default
BLAS: /usr/local/R-4.0.3/lib64/R/lib/libRblas.so
LAPACK: /usr/local/R-4.0.3/lib64/R/lib/libRlapack.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] reticulate_1.18 workflowr_1.6.2
loaded via a namespace (and not attached):
[1] Rcpp_1.0.5 rstudioapi_0.11 whisker_0.4 knitr_1.30
[5] magrittr_1.5 lattice_0.20-41 R6_2.5.0 rlang_0.4.8
[9] stringr_1.4.0 tools_4.0.3 grid_4.0.3 xfun_0.18
[13] git2r_0.27.1 htmltools_0.5.0 ellipsis_0.3.1 rprojroot_1.3-2
[17] yaml_2.2.1 digest_0.6.27 tibble_3.0.4 lifecycle_0.2.0
[21] crayon_1.3.4 Matrix_1.2-18 later_1.1.0.1 vctrs_0.3.4
[25] promises_1.1.1 fs_1.5.0 glue_1.4.2 evaluate_0.14
[29] rmarkdown_2.5 stringi_1.5.3 compiler_4.0.3 pillar_1.4.6
[33] backports_1.1.10 jsonlite_1.7.1 httpuv_1.5.4 pkgconfig_2.0.3