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Last updated: 2020-08-19

Checks: 2 0

Knit directory: jesslyn_ovca/analysis/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: 729ebf4

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 729ebf4. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    analysis/.DS_Store
    Ignored:    code/.DS_Store
    Ignored:    data/.DS_Store
    Ignored:    data/HTAPP/
    Ignored:    data/Izar_2020/
    Ignored:    data/gene_lists/.DS_Store
    Ignored:    data/gene_lists/extra/.DS_Store
    Ignored:    jesslyn_plots/
    Ignored:    mike_plots/
    Ignored:    old/.DS_Store
    Ignored:    old/edited/.DS_Store
    Ignored:    renv/.DS_Store
    Ignored:    renv/library/
    Ignored:    renv/python/
    Ignored:    renv/staging/
    Ignored:    vignettes/

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
Rmd	729ebf4	jgoh2	2020-08-19	workflowr::wflow_publish(files = files)
html	92568b8	jgoh2	2020-08-17	Build site.
Rmd	d60aeff	jgoh2	2020-08-17	More DE Analysis of other hallmarks
html	80345fe	jgoh2	2020-08-15	Build site.
html	789982d	jgoh2	2020-08-14	Build site.
html	e05c328	jgoh2	2020-08-12	Build site.
html	84edf85	jgoh2	2020-08-12	Build site.
html	a3ddf54	jgoh2	2020-08-07	Build site.
html	d801a7a	jgoh2	2020-08-04	Build site.
html	26f64a3	jgoh2	2020-08-03	Build site.
html	2dc1bee	jgoh2	2020-07-31	Build site.
Rmd	284aad4	jgoh2	2020-07-31	workflowr::wflow_publish(files = files)
html	5c5305b	jgoh2	2020-07-30	Build site.
Rmd	c8bb9fc	jgoh2	2020-07-30	PDX Exploratory + DE + Cell Cycle Analyses
html	6be6c85	jgoh2	2020-07-28	Build site.
Rmd	cdd10f9	jgoh2	2020-07-28	SS2 DE Analysis
html	cdd10f9	jgoh2	2020-07-28	SS2 DE Analysis
html	35c7947	jgoh2	2020-07-27	SS2 Analysis Part 1 and 2
html	f1acd7b	jgoh2	2020-07-24	Move PDX_choices.Rmd to old
Rmd	2b6116d	Mike Cuoco	2020-07-24	added 03.1_Izar2020_PDX_DEAnalysis
html	0058815	Mike Cuoco	2020-07-15	Build site.
html	a526dc6	Mike Cuoco	2020-07-15	add workflowr website
Rmd	086db99	Mike Cuoco	2020-07-15	add project description
Rmd	e407c2d	Mike Cuoco	2020-07-14	Start workflowr project.

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