Last updated: 2020-05-21

Checks: 2 0

Knit directory: drift-workflow/analysis/

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File Version Author Date Message
Rmd 3549c6d Joseph Marcus 2020-05-21 wflow_publish(“index.Rmd”)
html c6a96ae Joseph Marcus 2020-05-18 Build site.
html b18fe57 Joseph Marcus 2020-05-18 restored docs
html d09f644 Joseph Marcus 2020-05-18 minor tweaks
html 8660723 Joseph Marcus 2020-05-18 Build site.
html d8045c5 Joseph Marcus 2020-05-18 Build site.
Rmd 865cef4 Joseph Marcus 2020-05-18 added fixed shared factor
html 865cef4 Joseph Marcus 2020-05-18 added fixed shared factor
html 71684e5 Joseph Marcus 2020-05-13 Build site.
Rmd a864e2c Joseph Marcus 2020-05-13 wflow_publish(“index.Rmd”)
html 3421141 Joseph Marcus 2020-05-13 Build site.
Rmd 708d54d Joseph Marcus 2020-05-13 wflow_publish(“analysis/index.Rmd”)
html 2845b2c Joseph Marcus 2020-05-12 Build site.
Rmd add8033 Joseph Marcus 2020-05-12 wflow_publish(“index.Rmd”)
html 6947c09 Joseph Marcus 2020-05-09 added drfit analysis
html d8ba76d Joseph Marcus 2020-05-09 Build site.
Rmd ab45cd4 Joseph Marcus 2020-05-09 wflow_publish(“index.Rmd”)
html 1cf93f3 Joseph Marcus 2020-05-09 Build site.
Rmd ceffc2b Joseph Marcus 2020-05-09 wflow_publish(“index.Rmd”)
Rmd eb53ef2 Joseph Marcus 2020-05-05 simplified plotting code and updating analysis with new plots
html 2dd9256 Jason Willwerscheid 2020-01-18 Build site.
Rmd aec23d2 Jason Willwerscheid 2020-01-18 wflow_publish(“analysis/index.Rmd”)
html a9a33bc Jason Willwerscheid 2020-01-16 Build site.
Rmd b0090a0 Jason Willwerscheid 2020-01-16 wflow_publish(“analysis/index.Rmd”)
html 92ea5bb Jason Willwerscheid 2020-01-16 Build site.
Rmd 7128cb0 Jason Willwerscheid 2020-01-16 wflow_publish(“analysis/index.Rmd”)
html 3c8a921 Jason Willwerscheid 2020-01-15 Build site.
Rmd fc51e9b Jason Willwerscheid 2020-01-15 wflow_publish(“analysis/index.Rmd”)
html 7b056d2 Jason Willwerscheid 2020-01-14 Build site.
Rmd 3b38211 Jason Willwerscheid 2020-01-14 wflow_publish(“analysis/index.Rmd”)
html 63c9d16 Jason Willwerscheid 2020-01-10 Build site.
Rmd 885767b Jason Willwerscheid 2020-01-10 wflow_publish(“analysis/index.Rmd”)
html ad7400b Jason Willwerscheid 2020-01-10 Build site.
Rmd 6d7cf9e Jason Willwerscheid 2020-01-10 workflowr::wflow_publish(“analysis/index.Rmd”)
html 0bb6732 jhmarcus 2019-12-21 Build site.
Rmd 7b7b6d4 jhmarcus 2019-12-19 added init drift alpha application to simulation
html 7b7b6d4 jhmarcus 2019-12-19 added init drift alpha application to simulation
Rmd e3936bc jhmarcus 2019-12-01 pushing 2 pop analysis
html e3936bc jhmarcus 2019-12-01 pushing 2 pop analysis
Rmd 221956b jhmarcus 2019-05-23 added exploration of using bernoulli prior for enbm
html 221956b jhmarcus 2019-05-23 added exploration of using bernoulli prior for enbm
Rmd c03180c jhmarcus 2019-05-22 added 2 pop tree
html c03180c jhmarcus 2019-05-22 added 2 pop tree
Rmd 2ded9d3 jhmarcus 2019-05-20 added bimodal prior sim
html 2ded9d3 jhmarcus 2019-05-20 added bimodal prior sim
Rmd 44a10f7 jhmarcus 2019-05-05 added bimodal ash exploration
html 44a10f7 jhmarcus 2019-05-05 added bimodal ash exploration
html 89ee553 jhmarcus 2019-05-03 added github link
Rmd 912c5ff jhmarcus 2019-05-03 added simpler tree sim
html 912c5ff jhmarcus 2019-05-03 added simpler tree sim
Rmd e32adcc jhmarcus 2019-04-19 init badmixture sim
html e32adcc jhmarcus 2019-04-19 init badmixture sim
Rmd 0a3374d jhmarcus 2019-04-15 added simple sim
html 0a3374d jhmarcus 2019-04-15 added simple sim
html 71e0580 Peter Carbonetto 2019-03-14 Re-built home page with correct top-right link.
html 820a40e Peter Carbonetto 2019-03-14 Added link to hoa_global_alt analysis in home page.
Rmd 4c8921b Peter Carbonetto 2019-03-14 wflow_publish(“index.Rmd”)
html 9d521a9 jhmarcus 2019-03-06 Build site.
Rmd d2573ea jhmarcus 2019-03-05 updated idx
html d2573ea jhmarcus 2019-03-05 updated idx
html 9a69c08 jhmarcus 2019-03-05 updated data hoa
Rmd a1580ed jhmarcus 2019-03-04 added data exploration
html a1580ed jhmarcus 2019-03-04 added data exploration
html c203e00 jhmarcus 2019-03-03 Build site.
html 90a0a02 jhmarcus 2019-02-28 updated to autosomes and added manhatten plot
html 38a461d jhmarcus 2019-02-25 built all
html 7644d40 jhmarcus 2019-02-24 updated index
Rmd 38b57c5 jhmarcus 2019-02-24 simplified greedy flash global analysis
html 403bc6b jhmarcus 2019-02-15 added hide code blocks
html b4749ac jhmarcus 2019-02-15 fixed some typos
html 7a2b6c7 jhmarcus 2019-02-15 added backfit
Rmd f5ef1af jhmarcus 2019-02-15 added workflows for human origins datasets
html f5ef1af jhmarcus 2019-02-15 added workflows for human origins datasets
html 31a16c6 jhmarcus 2019-02-14 added hists of factors
html 9538510 jhmarcus 2019-02-14 switched to struct style plot
html 63c2b75 jhmarcus 2019-02-13 added softimpute
html 7b6ecbc jhmarcus 2019-02-13 made fig size bigger
Rmd 5c0f91a jhmarcus 2019-02-12 init flash proof of principle
html 5c0f91a jhmarcus 2019-02-12 init flash proof of principle
Rmd 46105ee jhmarcus 2019-02-11 Start workflowr project.

Authors: Joe Marcus and Jason Willwerscheid
Advisors: John Novembre, Peter Carbonetto, and Matthew Stephens

Current

Data Preparation

These vignettes describe data preparation steps:

Data Applications


Deprecated

Before 2019-12-01:

Exploration

These vignettes describe exploratory ideas:

Results

These vignettes describe results on simulated / empirical data: