Last updated: 2020-06-05
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Knit directory: STUtility_web_site/
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| File | Version | Author | Date | Message |
|---|---|---|---|---|
| html | f89df7e | Ludvig Larsson | 2020-06-05 | Build site. |
| html | 1e67a7c | Ludvig Larsson | 2020-06-04 | Build site. |
| html | f71b0c0 | Ludvig Larsson | 2020-06-04 | Build site. |
| html | 8a54a4d | Ludvig Larsson | 2020-06-04 | Build site. |
| html | 5e466eb | Ludvig Larsson | 2020-06-04 | Build site. |
| html | 377408d | Ludvig Larsson | 2020-06-04 | Build site. |
| html | ed54ffb | Ludvig Larsson | 2020-06-04 | Build site. |
| html | f14518c | Ludvig Larsson | 2020-06-04 | Build site. |
| html | efd885b | Ludvig Larsson | 2020-06-04 | Build site. |
| html | 4f42429 | Ludvig Larsson | 2020-06-04 | Build site. |
| Rmd | 3660612 | Ludvig Larsson | 2020-06-04 | update website |
| html | c3ef213 | jbergenstrahle | 2020-01-16 | Build site. |
| Rmd | 78077ac | jbergenstrahle | 2020-01-16 | Added installation info regarding bioconductor packages |
| html | fb06450 | jbergenstrahle | 2020-01-11 | Build site. |
| Rmd | baff98e | jbergenstrahle | 2019-12-16 | adding |
| Rmd | 5cb8ab1 | jbergenstrahle | 2019-12-02 | update2 |
| Rmd | 8f9876e | jbergenstrahle | 2019-11-29 | Update |
| Rmd | 03c9b7c | jbergenstrahle | 2019-11-19 | Added JB |
| html | 03c9b7c | jbergenstrahle | 2019-11-19 | Added JB |
| html | be8be1d | Ludvig Larsson | 2019-10-31 | Build site. |
| html | f42af97 | Ludvig Larsson | 2019-10-31 | Build site. |
| html | 0754921 | Ludvig Larsson | 2019-10-31 | Build site. |
| html | 908fe2c | Ludvig Larsson | 2019-10-31 | Build site. |
| html | 54787b5 | Ludvig Larsson | 2019-10-31 | Build site. |
| html | d96da86 | Ludvig Larsson | 2019-10-31 | Build site. |
| html | 7a20e6c | Ludvig Larsson | 2019-10-31 | Build site. |
| Rmd | 19ba86c | Ludvig Larsson | 2019-10-31 | Added theme |
| html | a3cff7a | Ludvig Larsson | 2019-10-31 | Build site. |
| Rmd | ec49ddf | Ludvig Larsson | 2019-10-31 | Added theme |
| html | 1a8c056 | Ludvig Larsson | 2019-10-31 | Build site. |
| html | a53305c | Ludvig Larsson | 2019-10-31 | Build site. |
| html | 6f61b95 | Ludvig Larsson | 2019-10-31 | Build site. |
| Rmd | 429c12c | Ludvig Larsson | 2019-10-31 | Publish the initial files for myproject |
| html | f0363a2 | Ludvig Larsson | 2019-10-31 | Build site. |
| Rmd | fab503b | Ludvig Larsson | 2019-10-31 | Publish the initial files for myproject |
| html | 41209f8 | Ludvig Larsson | 2019-10-31 | Build site. |
| html | d778f61 | Ludvig Larsson | 2019-10-31 | Build site. |
| Rmd | 77ea122 | Ludvig Larsson | 2019-10-31 | Publish the initial files for myproject |
STUtility requires R version >=3.6 and two packages (SingleCellExperiment and multtest) within the Bioconductor suit needs to be installed prior to installing STUtility from github:
If you don’t have bioconductor installed:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install()BiocManager::install("SingleCellExperiment")
BiocManager::install("multtest")To install STUtility from github (currently only option), you need to have devtools and the NNLM R package installed:
install.packages("devtools")
devtools::install_hithub("linxihui/NNLM")Using devtools, execute the following from the R console to install STUtility:
devtools::install_github(
"jbergenstrahle/STUtility"
)If you run into Error in dyn.load(file, DLLpath = DLLpath, ...):, make sure you have XQuartz installed, which can be downloaded from xquartz.org
A work by Joseph Bergenstråhle and Ludvig Larsson
sessionInfo()R version 4.0.0 (2020-04-24)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Mojave 10.14.6
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRblas.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] workflowr_1.6.2
loaded via a namespace (and not attached):
[1] Rcpp_1.0.4.6 rprojroot_1.3-2 digest_0.6.25 later_1.0.0
[5] R6_2.4.1 backports_1.1.6 git2r_0.27.1 magrittr_1.5
[9] evaluate_0.14 stringi_1.4.6 rlang_0.4.6 fs_1.4.1
[13] promises_1.1.0 whisker_0.4 rmarkdown_2.1 tools_4.0.0
[17] stringr_1.4.0 glue_1.4.0 httpuv_1.5.2 xfun_0.13
[21] yaml_2.2.1 compiler_4.0.0 htmltools_0.4.0 knitr_1.28