Last updated: 2022-11-22

Checks: 2 0

Knit directory: dgrp-starve/

This reproducible R Markdown analysis was created with workflowr (version 1.7.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: e82e73c

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version e82e73c. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


Untracked files:
    Untracked:  code/analysisSR.R
    Untracked:  code/geneGO.R
    Untracked:  code/multiPrep.R
    Untracked:  code/snpGene.77509.err
    Untracked:  code/snpGene.77509.out
    Untracked:  code/snpGene.77515.err
    Untracked:  code/snpGene.77515.out
    Untracked:  code/snpGene.sbatch
    Untracked:  data/eQTL_traits_females.csv
    Untracked:  data/eQTL_traits_males.csv
    Untracked:  data/goGroups.txt
    Untracked:  data/xp-f.txt
    Untracked:  data/xp-m.txt
    Untracked:  scoreAnalysisMulticomp.R
    Untracked:  temp.Rmd

Unstaged changes:
    Deleted:    analysis/database.Rmd
    Modified:   code/baseScript-lineComp.R
    Modified:   code/fourLinePrep.R

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
html f09779e nklimko 2022-11-22 Build site.
html f1d6437 nklimko 2022-11-15 Build site.
html 79e98ca nklimko 2022-11-15 Build site.
html d23d7f7 nklimko 2022-11-11 Build site.
Rmd 3a282f1 nklimko 2022-11-11 wflow_publish("analysis/*")
html 0ce7be4 nklimko 2022-11-10 code sync
Rmd b90e540 nklimko 2022-11-09 wflow_git_commit(all = TRUE)
html b90e540 nklimko 2022-11-09 wflow_git_commit(all = TRUE)
html 81037cc nklimko 2022-11-09 html reworking, snp success
html e9314ce nklimko 2022-11-05 wflow_git_commit(all = TRUE)
Rmd 3dab5a8 nklimko 2022-11-01 all files for me
html 3dab5a8 nklimko 2022-11-01 all files for me

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