Last updated: 2022-11-09
Checks: 1 1
Knit directory: dgrp-starve/
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| File | Version | Author | Date | Message |
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| html | 81037cc | nklimko | 2022-11-09 | html reworking, snp success |
| html | d2abea6 | nklimko | 2022-11-05 | 11/5 Phase plan, data prep/analysis nested steps and pseudo for script |
| Rmd | e9314ce | nklimko | 2022-11-05 | wflow_git_commit(all = TRUE) |
| html | e9314ce | nklimko | 2022-11-05 | wflow_git_commit(all = TRUE) |
| Rmd | 3dab5a8 | nklimko | 2022-11-01 | all files for me |
| html | 3dab5a8 | nklimko | 2022-11-01 | all files for me |
The common fruit fly, Drosophila melanogaster, is a model oganism due to short life cycles, small genomes that allow targetted manipulation, and analogous organ systems to humans. This allows for an accelerated rate of genetic testing and manipulation while bypassing major ethical concerns of experimenting on humans.
Diligent work in fly breeding and line isolation gave way to the Drosophila Reference Genetic Panel, known as DGRP2. This database contains over 200 gravid isofemale lines that have had their whole genomes sequenced.
Beyond this, extensive data collection has been performed on behavioral, fitness, and morphological traits for both males and females. Note: Males have an additional behavioral trait, aggression, which was collected from this study. FAKE, not sure which study
In this project, I looked at starvation resistance alone to practice data analysis and hopefully uncover interesting patterns.