Last updated: 2020-12-26
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Knit directory: 2019-feature-selection/
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| html | b65821e | pat-s | 2020-12-26 | Build site. |
| Rmd | 97711ce | pat-s | 2020-12-26 | wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose = TRUE) |
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| Rmd | 0c854fe | pat-s | 2020-12-26 | wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose = TRUE) |
| html | 875226f | pat-s | 2020-12-26 | Build site. |
| Rmd | e8b7487 | pat-s | 2020-12-26 | wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose = TRUE) |
| html | ea4e83e | pat-s | 2020-12-26 | Build site. |
| Rmd | 084bb6d | pat-s | 2020-12-26 | wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose = TRUE) |
| html | a016ad6 | pat-s | 2020-12-25 | Build site. |
| Rmd | 1143bc1 | pat-s | 2020-12-25 | wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose = TRUE) |
| html | a953299 | pat-s | 2020-08-12 | Build site. |
| html | 8b5e422 | pat-s | 2020-08-05 | Build site. |
| html | 2be34b0 | pat-s | 2020-03-22 | Build site. |
| Rmd | f40ac65 | pat-s | 2020-03-22 | wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose = TRUE) |
| Rmd | 8794c9d | pat-s | 2020-03-03 | remove copy_figures() from eda.Rmd |
| Rmd | 2e9f8a1 | pat-s | 2020-02-24 | do everything for buffer of 2m and no buffer |
| html | 3cab82e | pat-s | 2020-02-15 | Build site. |
| Rmd | 5b2fa27 | pat-s | 2020-02-15 | wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose = |
| html | f2c521e | pat-s | 2020-02-14 | Build site. |
| Rmd | 4f44b92 | pat-s | 2020-02-14 | wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose = |
| html | b1f675f | pat-s | 2020-01-08 | Build site. |
| html | f93458f | pat-s | 2019-12-21 | Build site. |
| html | 6f633ff | pat-s | 2019-09-02 | Build site. |
| Rmd | 518d0cb | pat-s | 2019-09-01 | style files using tidyverse style |
| html | 7582c67 | pat-s | 2019-08-31 | Build site. |
| html | caafca3 | pat-s | 2019-08-29 | Build site. |
| html | abed0ec | pat-s | 2019-08-12 | Build site. |
| html | df85aba | pat-s | 2019-07-12 | Build site. |
| html | 3a44a95 | pat-s | 2019-07-10 | Build site. |
| html | 4f6bc44 | pat-s | 2019-07-02 | Build site. |
| Rmd | 888dc6b | pat-s | 2019-07-02 | wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose = |
| Rmd | 24e318f | pat-s | 2019-07-01 | update reports |
| Rmd | b1f8fd7 | pat-s | 2019-07-01 | wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE, verbose = |
| Rmd | 0969776 | pat-s | 2019-06-28 | misc |
| html | 32d5be0 | pat-s | 2019-06-27 | Build site. |
| Rmd | 185d576 | pat-s | 2019-06-27 | wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE) |
| Rmd | ca7205f | pat-s | 2019-06-27 | add new report |
| Rmd | f49f020 | pat-s | 2019-06-26 | wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE) |
| html | 3110e18 | pat-s | 2019-06-24 | Build site. |
| Rmd | 13b04f0 | pat-s | 2019-06-24 | wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE) |
| html | 8b7af59 | pat-s | 2019-06-22 | Build site. |
| Rmd | 6402961 | pat-s | 2019-06-22 | wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE) |
| html | b5ca114 | pat-s | 2019-06-21 | Build site. |
| Rmd | 7b1372a | pat-s | 2019-06-21 | wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE) |
| Rmd | 2ffcc3b | pat-s | 2019-06-19 | wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE) |
| Rmd | 4cf247a | pat-s | 2019-06-18 | fix git |
| html | 4cf247a | pat-s | 2019-06-18 | fix git |
| Rmd | 48817ef | pat-s | 2019-06-15 | move figure |
| html | 4c3422d | pat-s | 2019-06-15 | Build site. |
| html | 55e63a8 | pat-s | 2019-06-15 | Build site. |
| Rmd | 21871f7 | pat-s | 2019-06-15 | wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE) |
| Rmd | 6e2989d | pat-s | 2019-06-15 | update reports |
| Rmd | eaa444a | pat-s | 2019-06-15 | add EDA and spectral signatures report |
| html | 5230081 | pat-s | 2019-06-15 | Build site. |
| Rmd | a036319 | pat-s | 2019-06-15 | wflow_publish(knitr_in(“analysis/eda.Rmd”), view = FALSE) |
| Name | Value |
|---|---|
| Rows | 1,808 |
| Columns | 90 |
| Discrete columns | 0 |
| Continuous columns | 90 |
| All missing columns | 0 |
| Missing observations | 0 |
| Complete Rows | 1,808 |
| Total observations | 162,720 |
| Version | Author | Date |
|---|---|---|
| 3cab82e | pat-s | 2020-02-15 |
| f2c521e | pat-s | 2020-02-14 |
| b1f675f | pat-s | 2020-01-08 |
| f93458f | pat-s | 2019-12-21 |
| 6f633ff | pat-s | 2019-09-02 |
| 7582c67 | pat-s | 2019-08-31 |
| abed0ec | pat-s | 2019-08-12 |
| 4f6bc44 | pat-s | 2019-07-02 |
| 32d5be0 | pat-s | 2019-06-27 |
| b5ca114 | pat-s | 2019-06-21 |
| 4cf247a | pat-s | 2019-06-18 |
| 5230081 | pat-s | 2019-06-15 |
| Version | Author | Date |
|---|---|---|
| 3cab82e | pat-s | 2020-02-15 |
| f2c521e | pat-s | 2020-02-14 |
| b1f675f | pat-s | 2020-01-08 |
| f93458f | pat-s | 2019-12-21 |
| 6f633ff | pat-s | 2019-09-02 |
| 7582c67 | pat-s | 2019-08-31 |
| abed0ec | pat-s | 2019-08-12 |
| 3a44a95 | pat-s | 2019-07-10 |
| 4f6bc44 | pat-s | 2019-07-02 |
| 32d5be0 | pat-s | 2019-06-27 |
| b5ca114 | pat-s | 2019-06-21 |
| 4cf247a | pat-s | 2019-06-18 |
| 4c3422d | pat-s | 2019-06-15 |
| 5230081 | pat-s | 2019-06-15 |
| Version | Author | Date |
|---|---|---|
| 3cab82e | pat-s | 2020-02-15 |
| f2c521e | pat-s | 2020-02-14 |
| b1f675f | pat-s | 2020-01-08 |
| f93458f | pat-s | 2019-12-21 |
| 6f633ff | pat-s | 2019-09-02 |
| 7582c67 | pat-s | 2019-08-31 |
| abed0ec | pat-s | 2019-08-12 |
| 4f6bc44 | pat-s | 2019-07-02 |
| 32d5be0 | pat-s | 2019-06-27 |
| b5ca114 | pat-s | 2019-06-21 |
| 4cf247a | pat-s | 2019-06-18 |
| 5230081 | pat-s | 2019-06-15 |
| Version | Author | Date |
|---|---|---|
| 3cab82e | pat-s | 2020-02-15 |
| f2c521e | pat-s | 2020-02-14 |
| b1f675f | pat-s | 2020-01-08 |
| f93458f | pat-s | 2019-12-21 |
| 6f633ff | pat-s | 2019-09-02 |
| 7582c67 | pat-s | 2019-08-31 |
| abed0ec | pat-s | 2019-08-12 |
| 3a44a95 | pat-s | 2019-07-10 |
| 4f6bc44 | pat-s | 2019-07-02 |
| 32d5be0 | pat-s | 2019-06-27 |
| b5ca114 | pat-s | 2019-06-21 |
| 4cf247a | pat-s | 2019-06-18 |
| 4c3422d | pat-s | 2019-06-15 |
| 5230081 | pat-s | 2019-06-15 |
| Version | Author | Date |
|---|---|---|
| 3cab82e | pat-s | 2020-02-15 |
| f2c521e | pat-s | 2020-02-14 |
| b1f675f | pat-s | 2020-01-08 |
| f93458f | pat-s | 2019-12-21 |
| 6f633ff | pat-s | 2019-09-02 |
| 7582c67 | pat-s | 2019-08-31 |
| abed0ec | pat-s | 2019-08-12 |
| 3a44a95 | pat-s | 2019-07-10 |
| 4f6bc44 | pat-s | 2019-07-02 |
| 32d5be0 | pat-s | 2019-06-27 |
| b5ca114 | pat-s | 2019-06-21 |
| 4cf247a | pat-s | 2019-06-18 |
| 4c3422d | pat-s | 2019-06-15 |
| 5230081 | pat-s | 2019-06-15 |
| Version | Author | Date |
|---|---|---|
| 3cab82e | pat-s | 2020-02-15 |
| f2c521e | pat-s | 2020-02-14 |
| b1f675f | pat-s | 2020-01-08 |
| f93458f | pat-s | 2019-12-21 |
| 6f633ff | pat-s | 2019-09-02 |
| 7582c67 | pat-s | 2019-08-31 |
| abed0ec | pat-s | 2019-08-12 |
| 3a44a95 | pat-s | 2019-07-10 |
| 4f6bc44 | pat-s | 2019-07-02 |
| 32d5be0 | pat-s | 2019-06-27 |
| b5ca114 | pat-s | 2019-06-21 |
| 4cf247a | pat-s | 2019-06-18 |
| 4c3422d | pat-s | 2019-06-15 |
| 5230081 | pat-s | 2019-06-15 |
| Version | Author | Date |
|---|---|---|
| b65821e | pat-s | 2020-12-26 |
| 875226f | pat-s | 2020-12-26 |
| a016ad6 | pat-s | 2020-12-25 |
| 8b5e422 | pat-s | 2020-08-05 |
| 3cab82e | pat-s | 2020-02-15 |
| f2c521e | pat-s | 2020-02-14 |
| b1f675f | pat-s | 2020-01-08 |
| f93458f | pat-s | 2019-12-21 |
| 6f633ff | pat-s | 2019-09-02 |
| 7582c67 | pat-s | 2019-08-31 |
| 4f6bc44 | pat-s | 2019-07-02 |
| 32d5be0 | pat-s | 2019-06-27 |
| b5ca114 | pat-s | 2019-06-21 |
| 4cf247a | pat-s | 2019-06-18 |
| 5230081 | pat-s | 2019-06-15 |
| Version | Author | Date |
|---|---|---|
| 875226f | pat-s | 2020-12-26 |
| a016ad6 | pat-s | 2020-12-25 |
| 3cab82e | pat-s | 2020-02-15 |
| f2c521e | pat-s | 2020-02-14 |
| b1f675f | pat-s | 2020-01-08 |
| f93458f | pat-s | 2019-12-21 |
| 6f633ff | pat-s | 2019-09-02 |
| 7582c67 | pat-s | 2019-08-31 |
| abed0ec | pat-s | 2019-08-12 |
| 3a44a95 | pat-s | 2019-07-10 |
| 4f6bc44 | pat-s | 2019-07-02 |
| 32d5be0 | pat-s | 2019-06-27 |
| b5ca114 | pat-s | 2019-06-21 |
| 4cf247a | pat-s | 2019-06-18 |
| 4c3422d | pat-s | 2019-06-15 |
| 5230081 | pat-s | 2019-06-15 |
| Version | Author | Date |
|---|---|---|
| 8b5e422 | pat-s | 2020-08-05 |
| 3cab82e | pat-s | 2020-02-15 |
| f2c521e | pat-s | 2020-02-14 |
| b1f675f | pat-s | 2020-01-08 |
| f93458f | pat-s | 2019-12-21 |
| 6f633ff | pat-s | 2019-09-02 |
| 7582c67 | pat-s | 2019-08-31 |
| abed0ec | pat-s | 2019-08-12 |
| 4f6bc44 | pat-s | 2019-07-02 |
| 32d5be0 | pat-s | 2019-06-27 |
| b5ca114 | pat-s | 2019-06-21 |
| 4cf247a | pat-s | 2019-06-18 |
| 5230081 | pat-s | 2019-06-15 |
| Name | Value |
|---|---|
| Rows | 1,808 |
| Columns | 7,382 |
| Discrete columns | 0 |
| Continuous columns | 7,382 |
| All missing columns | 0 |
| Missing observations | 0 |
| Complete Rows | 1,808 |
| Total observations | 13,346,656 |
No histograms for NRI -> too many features.
| Version | Author | Date |
|---|---|---|
| b65821e | pat-s | 2020-12-26 |
| 875226f | pat-s | 2020-12-26 |
| a016ad6 | pat-s | 2020-12-25 |
| 8b5e422 | pat-s | 2020-08-05 |
| f2c521e | pat-s | 2020-02-14 |
| b1f675f | pat-s | 2020-01-08 |
| f93458f | pat-s | 2019-12-21 |
| 6f633ff | pat-s | 2019-09-02 |
| 7582c67 | pat-s | 2019-08-31 |
| 4f6bc44 | pat-s | 2019-07-02 |
| 32d5be0 | pat-s | 2019-06-27 |
| b5ca114 | pat-s | 2019-06-21 |
| 4cf247a | pat-s | 2019-06-18 |
| 5230081 | pat-s | 2019-06-15 |
| Version | Author | Date |
|---|---|---|
| 875226f | pat-s | 2020-12-26 |
| a016ad6 | pat-s | 2020-12-25 |
| f2c521e | pat-s | 2020-02-14 |
| b1f675f | pat-s | 2020-01-08 |
| f93458f | pat-s | 2019-12-21 |
| 6f633ff | pat-s | 2019-09-02 |
| 7582c67 | pat-s | 2019-08-31 |
| abed0ec | pat-s | 2019-08-12 |
| 3a44a95 | pat-s | 2019-07-10 |
| 4f6bc44 | pat-s | 2019-07-02 |
| 32d5be0 | pat-s | 2019-06-27 |
| b5ca114 | pat-s | 2019-06-21 |
| 4cf247a | pat-s | 2019-06-18 |
| 4c3422d | pat-s | 2019-06-15 |
| 5230081 | pat-s | 2019-06-15 |
No correlation plot for NRI -> too many features.
| Name | Value |
|---|---|
| Rows | 1,808 |
| Columns | 123 |
| Discrete columns | 0 |
| Continuous columns | 123 |
| All missing columns | 0 |
| Missing observations | 0 |
| Complete Rows | 1,808 |
| Total observations | 222,384 |
| Version | Author | Date |
|---|---|---|
| b65821e | pat-s | 2020-12-26 |
| 0328965 | pat-s | 2020-12-26 |
| 875226f | pat-s | 2020-12-26 |
| a016ad6 | pat-s | 2020-12-25 |
| 8b5e422 | pat-s | 2020-08-05 |
| 2be34b0 | pat-s | 2020-03-22 |
| f2c521e | pat-s | 2020-02-14 |
| b1f675f | pat-s | 2020-01-08 |
| f93458f | pat-s | 2019-12-21 |
| 4f6bc44 | pat-s | 2019-07-02 |
| b5ca114 | pat-s | 2019-06-21 |
| 4cf247a | pat-s | 2019-06-18 |
| 5230081 | pat-s | 2019-06-15 |
# A tibble: 4 x 2
plot `mean(defoliation)`
<fct> <dbl>
1 Laukiz 1 57.2
2 Laukiz 2 13.5
3 Luiando 68.4
4 Oiartzun 69.1# A tibble: 4 x 2
plot `(sd(defoliation)/mean(defoliation)) * 100`
<fct> <dbl>
1 Laukiz 1 34.5
2 Laukiz 2 125.
3 Luiando 12.2
4 Oiartzun 20.2# A tibble: 4 x 2
plot `((sd(defoliation)/mean(defoliation)) * 100)/e1071::skewness(de…
<fct> <dbl>
1 Laukiz 1 -40.7
2 Laukiz 2 55.0
3 Luiando -3.19
4 Oiartzun -21.5 # A tibble: 4 x 2
plot `sd(defoliation)`
<fct> <dbl>
1 Laukiz 1 19.8
2 Laukiz 2 16.9
3 Luiando 8.32
4 Oiartzun 14.0 Warning in is.na(x): is.na() applied to non-(list or vector) of type
'expression'
Warning in is.na(x): is.na() applied to non-(list or vector) of type
'expression'
Warning in is.na(x): is.na() applied to non-(list or vector) of type
'expression'
Warning in is.na(x): is.na() applied to non-(list or vector) of type
'expression'
In Meters.
$`Laukiz 1`
[1] 34.3363
$`Laukiz 2`
[1] 61.5862
$Luiando
[1] 33.75951
$Oiartzun
[1] 35.09547The following buffer sizes were used to extract the remote sensing information (1 m spatial resolution) to the trees (points):
For this EDA only the direct reflectance values are used. It is assumed that the VI and NRI datasets will be affected in the same way by the different buffer sizes.
Warning: Removed 1 row(s) containing missing values (geom_path).
| Version | Author | Date |
|---|---|---|
| ea4e83e | pat-s | 2020-12-26 |
Comparing the “proportion of variance explained” (POV) for all feature sets.
R version 3.6.2 (2019-12-12)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
Matrix products: default
BLAS: /opt/spack/opt/spack/linux-centos7-x86_64/gcc-9.2.0/r-3.6.2-sqpyonnenmuqbwdscxgxyfr2tm42unxr/rlib/R/lib/libRblas.so
LAPACK: /opt/spack/opt/spack/linux-centos7-x86_64/gcc-9.2.0/r-3.6.2-sqpyonnenmuqbwdscxgxyfr2tm42unxr/rlib/R/lib/libRlapack.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] fs_1.4.1 raster_3.3-13 sp_1.4-4
[4] purrr_0.3.4 knitr_1.23 ggpubr_0.1.6
[7] ggplot2_3.3.0 ggsci_2.9 dplyr_0.8.3
[10] DataExplorer_0.8.0 magrittr_1.5 drake_7.12.7
loaded via a namespace (and not attached):
[1] Rcpp_1.0.3 txtq_0.2.3 lattice_0.20-38
[4] tidyr_1.0.0 class_7.3-15 prettyunits_1.0.2
[7] assertthat_0.2.1 rprojroot_1.3-2 digest_0.6.25
[10] utf8_1.1.4 R6_2.4.1 plyr_1.8.4
[13] backports_1.1.5 e1071_1.7-0.1 evaluate_0.13
[16] highr_0.7 pillar_1.4.3 rlang_0.4.8
[19] progress_1.2.0 data.table_1.12.8 whisker_0.3-2
[22] R.utils_2.8.0 R.oo_1.23.0 rmarkdown_1.13
[25] labeling_0.3 rgdal_1.5-18 stringr_1.4.0
[28] htmlwidgets_1.3 igraph_1.2.4.1 munsell_0.5.0
[31] compiler_3.6.2 httpuv_1.4.5.1 xfun_0.5
[34] pkgconfig_2.0.3 htmltools_0.3.6 tidyselect_1.1.0
[37] tibble_2.1.3 gridExtra_2.3 workflowr_1.6.1
[40] codetools_0.2-16 fansi_0.4.1 sf_0.9-6
[43] crayon_1.3.4 withr_2.1.2 later_1.0.0
[46] R.methodsS3_1.7.1 grid_3.6.2 DBI_1.0.0
[49] gtable_0.3.0 lifecycle_0.2.0 git2r_0.26.1
[52] storr_1.2.1 units_0.6-2 scales_1.1.0
[55] KernSmooth_2.23-15 cli_2.0.2 stringi_1.3.1
[58] farver_2.0.3 reshape2_1.4.3 promises_1.0.1
[61] filelock_1.0.2 vctrs_0.3.5 tools_3.6.2
[64] glue_1.4.0 hms_0.5.3 networkD3_0.4
[67] parallel_3.6.2 yaml_2.2.0 colorspace_1.4-0
[70] classInt_0.4-3 base64url_1.4 patchwork_1.1.1