Last updated: 2022-03-10

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Knit directory: Amphibolis_Posidonia_Comparison/

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Rmd a5be915 Philipp Bayer 2021-04-14 Start workflowr project.

This website collects comparisons of Amphibolis and Posidonia comparative analyses.

Repeat comparison plots - Comparing genome sizes and repeat/TE content

Phylogenies - plotting just phylogenies

Clustering results - analysing Orthofinder clustering results

R gene plotting - making phylogenies and showing R-gene number differences

Gene Loss comparison by reads - making heatmaps and barcharts to compare read alignments

GO enrichment - running topGO and REVIGO to make nice plots of GO-enrichment

GO and Ortho - merging plots from GO enrichment and Orthofinder analysis

MSA visualisation - visualising MSAs and phylogenies for gene clusters of interest (SOS3)