GO enrichment

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Last updated: 2021-12-20

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Knit directory: Amphibolis_Posidonia_Comparison/

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Lost in seagrasses

The GO enrichment does not work well on my laptop so I’m setting this to eval=FALSE and run it on a remote server. The script which writes the input files is a Python script in the scripts/ folder: findClustersUniqueToAquatic.py. This script parses Orthofinder output to pull out genome-specific groups and genes.

# give properly formatted background in format: GO:0005838  GSBRNA2T00088508001;GSBRNA2T00088313001;GSBRNA2T00035842001 
#annAT <- readMappings('BACKGROUND.txt.gz', sep="\t", IDsep=";")
#save(annAT, file='annAtObject.RData')

load('annAtObject.RData')
allgenes <- unique(unlist(annAT))

compare <- function(genelistfile, outname, allgenes, annAT) {
  # give file with your genes of interest, one gene_id per line
  
  mygenes <-scan(genelistfile ,what="")
  geneList <- factor(as.integer(allgenes %in% mygenes))
  names(geneList) <- allgenes
  
  GOdata <-new ("topGOdata", ontology = 'BP', allGenes = geneList, nodeSize = 5, annot=annFUN.GO2genes, GO2genes=annAT)
  # using ClassicCount:
  #test.stat <-new ("classicCount", testStatistic = GOFisherTest, name = "Fisher Test")
  #resultsFisherC <-getSigGroups (GOdata, test.stat)
  # using weight01:
  weight01.fisher <- runTest(GOdata, statistic = "fisher")
  # using ClassicCount:
  # allRes <- GenTable(GOdata, classicFisher= resultsFisherC, topNodes = 30)
  # using weight01:
  allRes <- GenTable(GOdata, classicFisher=weight01.fisher,topNodes=30)#,topNodes=100)
  names(allRes)[length(allRes)] <- "p.value"
  p_values <- score(weight01.fisher)
  adjusted_p <- p.adjust(p_values)
  adjusted_p[adjusted_p < 0.05] %>% enframe() %>% write_csv('data/' + outname)

}

lost in seagrasses, each one uniquely vs all terrestrials

compare('lost_in_amphi_vs_all.txt', 'missing_amphi_vs_all_GO.txt', allgenes, annAT)
compare('lost_in_posi_vs_all.txt', 'missing_posi_vs_all_GO.txt', allgenes, annAT)
compare('lost_in_zmar_vs_all.txt', 'missing_zmar_vs_all_GO.txt', allgenes, annAT)
compare('lost_in_zmuel_vs_all.txt', 'missing_zmuel_vs_all_GO.txt', allgenes, annAT)

lost in seagrasses vs all terrestrials

Here we compare GO terms for seagrasses and aquatics (seagrasses+duckweeds) vs all terrestrials

compare('lost_in_seagrasses.txt', 'missing_seagrasses_GO.txt', allgenes, annAT)
compare('lost_in_aquatics.txt', 'missing_aquatics_GO.txt', allgenes, annAT)
compare('only_in_seagrasses.txt', 'only_seagrasses_GO.txt', allgenes, annAT)

Seagrass only comparisons

Now we compare seagrasses within each other.

For the seagrass-only comparisons, I’m using a Seagrass-only background as that makes more biological sense to me.s

# give properly formatted background in format: GO:0005838  GSBRNA2T00088508001;GSBRNA2T00088313001;GSBRNA2T00035842001 
#sannAT <- readMappings('SEAGRASSBACKGROUND.txt', sep="\t", IDsep=";")
#save(sannAT, file='sannAtObject.RData')

load('annAtObject.RData')
sallgenes <- unique(unlist(sannAT))

compare('lost_in_amphi.txt', 'lost_in_amphi_vs_seagrasses_GO.txt', sallgenes, sannAT)
compare('lost_in_posi.txt', 'lost_in_posi_vs_seagrasses_GO.txt', sallgenes, sannAT)
compare('lost_in_zmar.txt', 'lost_in_zmar_vs_seagrasses_GO.txt', sallgenes, sannAT)
compare('lost_in_zmuel.txt', 'lost_in_zmuel_vs_seagrasses_GO.txt', sallgenes, sannAT)

Present in seagrasses

The opposite - which GO-terms are present only in one of the four species?

compare('only_in_amphi.txt', 'only_in_amphi_vs_seagrasses_GO.txt', sallgenes, sannAT)
compare('only_in_posi.txt', 'only_in_posi_vs_seagrasses_GO.txt', sallgenes, sannAT)
compare('only_in_zmar.txt', 'only_in_zmar_vs_seagrasses_GO.txt', sallgenes, sannAT)
compare('only_in_zmuel.txt', 'only_in_zmuel_vs_seagrasses_GO.txt', sallgenes, sannAT)

Alright now we have all these different GO terms in all these files - we can send them to revigo for visualiation and some deduplication!

Revigo

This code is based on http://revigo.irb.hr/CodeExamples/revigo.R.txt

results_list <- list()

for (f in list.files('./data/', pattern='GO.txt')){
  filename <- paste('./data/', f, sep='')
  go_and_pvalues <- readChar(filename, file.info(filename)$size)
  go_and_pvalues <- gsub(',', ' ', go_and_pvalues)
  
  httr::POST(
    url = "http://revigo.irb.hr/StartJob.aspx",
    body = list(
      cutoff = "0.7",
      valueType = "pvalue",
     # speciesTaxon = "4577", # zea mays
     #speciesTaxon = '39947', # japonica
     speciesTaxon = '3702', # arabidopsis
      measure = "SIMREL",
      goList = go_and_pvalues
    ),
    # application/x-www-form-urlencoded
    encode = "form"
  ) -> res
  
  dat <- httr::content(res, encoding = "UTF-8")
  
  jobid <- jsonlite::fromJSON(dat,bigint_as_char=TRUE)$jobid
  
  # Check job status
  running <- "1"
  while (running != "0" ) {
      httr::POST(
        url = "http://revigo.irb.hr/QueryJobStatus.aspx",
        query = list( jobid = jobid )
      ) -> res2
      dat2 <- httr::content(res2, encoding = "UTF-8")
      running <- jsonlite::fromJSON(dat2)$running
      Sys.sleep(1)
  }
  
  # Fetch results
  httr::POST(
    url = "http://revigo.irb.hr/ExportJob.aspx",
    query = list(
      jobid = jobid, 
      namespace = "1",
      type = "CSVTable"
    )
  ) -> res3
  
  dat3 <- httr::content(res3, encoding = "UTF-8")
  
  dat3 <- stri_replace_all_fixed(dat3, "\r", "")
  # Now we have a csv table in a string!

  # read_csv does not like the ', ', it wants ','
  dat <- read_csv(gsub(', ', ',', dat3), show_col_types = FALSE) 
  
  # do we even have results?
  if(nrow(dat) == 0){next}
  results_list[[f]] <- dat
  
}

OK we have a list with all results in a big list. Now we can plot!

Making Supplementary Tables for the REVIGO results

Let’s also pull these terms out as tables

for( i in names(results_list)) {
  print(i)
  print(knitr::kable(results_list[[i]] %>% filter(Eliminated == FALSE), label=i))
  cat("\n")
}

[1] “lost_in_amphi_GO.txt”

TermID	Name	Frequency	PlotX	PlotY	LogSize	Value	Uniqueness	Dispensability	Representative	Eliminated
GO:0002474	antigen processing and presentation of peptide antigen via MHC class I	1.0871030	-1.6727552853443	1.10673644156203	2.3856063	-2.689686	1.0000000	0.0000000	null	FALSE
GO:0006278	RNA-dependent DNA biosynthetic process	0.2605453	5.3731654075156	-3.65320261881819	1.7708520	-154.570365	0.8150443	0.0000000	null	FALSE
GO:0010726	positive regulation of hydrogen peroxide metabolic process	0.0179686	-2.73341869520016	-5.67697148475644	0.6989700	-19.887919	0.8675983	0.0000000	null	FALSE
GO:0015709	thiosulfate transport	0.0134765	3.86431349160967	5.81608552490606	0.6020600	-7.854354	0.9228281	0.0000000	null	FALSE
GO:0080181	lateral root branching	0.0134765	-6.11424440914567	1.47955752054123	0.6020600	-17.324362	0.9541347	0.0000000	null	FALSE
GO:0032197	transposition,RNA-mediated	0.0044922	-3.3434872276169	0.951057826630962	0.3010300	-153.541147	0.9813284	0.0208561	null	FALSE
GO:0071395	cellular response to jasmonic acid stimulus	0.4222632	-1.06550288007675	5.59973354258922	1.9777236	-23.603685	0.8904716	0.0291553	null	FALSE
GO:0006012	galactose metabolic process	0.1212884	7.73135918189174	1.41776268135646	1.4471580	-1.606369	0.8947722	0.0910746	null	FALSE
GO:0016101	diterpenoid metabolic process	0.2740218	6.7869138122863	2.48159294013057	1.7923917	-3.540981	0.8589484	0.0973387	null	FALSE
GO:1904580	regulation of intracellular mRNA localization	0.0044922	-6.00775763867606	-2.50329841309084	0.3010300	-3.743490	0.9250105	0.1175562	null	FALSE
GO:0045962	positive regulation of development,heterochronic	0.0733720	-0.464706287082207	-7.17967148744172	1.2304489	-9.318720	0.9096345	0.1222856	null	FALSE
GO:0006032	chitin catabolic process	0.1078119	3.8467792298481	-0.194553688426596	1.3979400	-6.683057	0.9064345	0.1338994	null	FALSE
GO:0070562	regulation of vitamin D receptor signaling pathway	0.1497720	-3.05023033416658	-3.26718947383339	1.5314789	-6.913688	0.8866193	0.1448064	null	FALSE
GO:0002229	defense response to oomycetes	0.3234356	-3.14372128960566	5.72725969052877	1.8633229	-3.722154	0.9556362	0.1680904	null	FALSE
GO:0009648	photoperiodism	0.3414042	-3.18412903724093	4.86370595551385	1.8864907	-3.590301	0.9495265	0.1689057	null	FALSE
GO:0010337	regulation of salicylic acid metabolic process	0.0943354	-4.34359995686906	-4.32766980625972	1.3424227	-10.566727	0.9132621	0.2045798	null	FALSE
GO:0090059	protoxylem development	0.0134765	-5.74242428475509	3.1443121908419	0.6020600	-3.236933	0.9816131	0.2096160	null	FALSE
GO:0006508	proteolysis	5.0132519	6.07354749323483	-4.66768184187335	3.0480532	-79.607924	0.8973448	0.2178377	null	FALSE
GO:0090110	COPII-coated vesicle cargo loading	0.0539059	3.32102210334316	3.30159037005581	1.1139434	-3.236933	0.8847802	0.2267775	null	FALSE
GO:0003094	glomerular filtration	0.0943354	-6.57364327139877	0.573337363674392	1.3424227	-3.506441	0.9676868	0.2354660	null	FALSE
GO:0006275	regulation of DNA replication	0.2515610	-3.73854626709682	-4.74614307109263	1.7558749	-3.730017	0.9069957	0.2462666	null	FALSE
GO:0009554	megasporogenesis	0.0539059	-6.12716895427584	2.01917198389907	1.1139434	-1.321762	0.9365606	0.2579909	null	FALSE
GO:0010951	negative regulation of endopeptidase activity	0.2066394	-4.31081807326593	-5.07659598328982	1.6720979	-3.564044	0.9005586	0.2621373	null	FALSE
GO:0000350	generation of catalytic spliceosome for second transesterification step	0.0134765	3.4117621894521	-4.12569225964477	0.6020600	-4.812729	0.8336208	0.2873025	null	FALSE
GO:0000495	box H/ACA RNA 3’-end processing	0.0044922	3.85653535900181	-6.05648548654774	0.3010300	-1.315281	0.8874169	0.3189026	null	FALSE
GO:0080021	response to benzoic acid	0.0044922	-0.417711316449927	6.45612606688088	0.3010300	-6.390517	0.9425977	0.3221125	null	FALSE
GO:0042178	xenobiotic catabolic process	0.0179686	0.0534348410228498	4.77297481089168	0.6989700	-3.362176	0.8807235	0.3435777	null	FALSE
GO:2000636	positive regulation of primary miRNA processing	0.0134765	-3.10864828054068	-6.02176704363563	0.6020600	-1.315281	0.8825285	0.3606938	null	FALSE
GO:0072344	rescue of stalled ribosome	0.0314451	5.78401888828655	-3.41744782734788	0.9030900	-1.315281	0.8437476	0.3612349	null	FALSE
GO:0072756	cellular response to paraquat	0.0044922	-0.175048903462602	5.90047197919317	0.3010300	-2.168010	0.9249762	0.3674946	null	FALSE
GO:0072488	ammonium transmembrane transport	0.0269530	4.25708245473002	5.349536103918	0.8450980	-6.112218	0.9101838	0.3749833	null	FALSE
GO:0010942	positive regulation of cell death	0.1527335	-2.25090614527053	-5.81276064305381	1.5440680	-14.685584	0.8783753	0.3819289	null	FALSE
GO:0010555	response to mannitol	0.0673824	-1.04111594454982	6.10553822571712	1.2041200	-3.407172	0.9327828	0.3904216	null	FALSE
GO:2000630	positive regulation of miRNA metabolic process	0.0134765	-2.85364682526271	-6.13991876474009	0.6020600	-1.315281	0.8825285	0.3973892	null	FALSE
GO:0009629	response to gravity	0.4626926	-2.83143458048149	4.75510681756742	2.0170333	-3.039850	0.9485452	0.3974675	null	FALSE
GO:0090501	RNA phosphodiester bond hydrolysis	0.8804636	4.53965073396178	-5.25784248136028	2.2944662	-99.312749	0.8499513	0.3997076	null	FALSE
GO:1901333	positive regulation of lateral root development	0.0179686	-1.30820132836595	-6.91383708017902	0.6989700	-2.689686	0.8738294	0.4072265	null	FALSE
GO:0044245	polysaccharide digestion	11.9626252	-6.43095987338225	0.950906659898322	3.4255342	-13.713775	0.9582622	0.4113275	null	FALSE
GO:1990481	mRNA pseudouridine synthesis	0.0224608	4.23182887999538	-5.91700047373755	0.7781513	-3.677092	0.8790236	0.4142760	null	FALSE
GO:0070126	mitochondrial translational termination	0.0179686	4.51540323686568	-2.49318994790563	0.6989700	-1.315281	0.8076625	0.4155310	null	FALSE
GO:0034626	fatty acid elongation,polyunsaturated fatty acid	0.0179686	7.02503055512766	0.187179207172723	0.6989700	-3.464066	0.7987183	0.4495755	null	FALSE
GO:0009089	lysine biosynthetic process via diaminopimelate	0.0673824	6.72419713068119	-1.01288515275205	1.2041200	-2.699278	0.8263017	0.4703089	null	FALSE
GO:0033259	plastid DNA replication	0.0089843	4.64582128000801	-2.98963290485687	0.4771213	-7.854354	0.8190097	0.4730520	null	FALSE
GO:0006182	cGMP biosynthetic process	0.0224608	5.77257852220828	-2.3332846172543	0.7781513	-8.073348	0.8202206	0.4778367	null	FALSE
GO:0015695	organic cation transport	0.0718746	4.46404197359711	5.45922566256438	1.2304489	-5.943629	0.9274628	0.4798653	null	FALSE
GO:0090305	nucleic acid phosphodiester bond hydrolysis	1.6171780	4.8084994225939	-4.9626120765926	2.5575072	-16.906247	0.8489085	0.4820982	null	FALSE
GO:0071422	succinate transmembrane transport	0.0179686	3.85095124975333	5.54326080370877	0.6989700	-5.214207	0.8974115	0.4841726	null	FALSE
GO:2000032	regulation of secondary shoot formation	0.0718746	-0.663301823676238	-7.30247239139029	1.2304489	-1.698816	0.9053898	0.4855638	null	FALSE
GO:0006334	nucleosome assembly	0.1841786	1.39681096040126	-0.332514538941092	1.6232493	-4.587444	0.9074488	0.4888051	null	FALSE
GO:0001561	fatty acid alpha-oxidation	0.0089843	6.43409744996185	1.76407682701602	0.4771213	-1.315281	0.8394512	0.4943296	null	FALSE
GO:0080153	negative regulation of reductive pentose-phosphate cycle	0.0134765	-4.99521234195402	-4.82905607287601	0.6020600	-3.464066	0.9139349	0.4953921	null	FALSE
GO:0071465	cellular response to desiccation	0.0763667	-1.80628040798059	5.48925481072173	1.2552725	-6.390517	0.8897283	0.5346686	null	FALSE
GO:0009451	RNA modification	1.4105386	4.52500487496484	-4.99411253909888	2.4983106	-13.803692	0.8446371	0.5481052	null	FALSE
GO:1902609	(R)-2-hydroxy-alpha-linolenic acid biosynthetic process	0.0089843	6.99127706930658	0.417908817257102	0.4771213	-1.315281	0.8193718	0.5551354	null	FALSE
GO:0051258	protein polymerization	0.1347648	1.32466220047871	-0.0474226703097551	1.4913617	-1.810823	0.9128928	0.5760110	null	FALSE
GO:0035445	borate transmembrane transport	0.0269530	4.09528891149748	5.67286976885456	0.8450980	-2.035237	0.8991229	0.5766489	null	FALSE
GO:0048657	anther wall tapetum cell differentiation	0.0134765	-6.20339835205588	1.69841049471865	0.6020600	-2.917278	0.9311978	0.5928954	null	FALSE
GO:1903335	regulation of vacuolar transport	0.0089843	-5.767032212432	-2.69594284284997	0.4771213	-2.864523	0.9226310	0.5958785	null	FALSE
GO:0006264	mitochondrial DNA replication	0.0404295	6.81583865793783	-2.41998761363005	1.0000000	-4.812729	0.8650425	0.6158060	null	FALSE
GO:0043693	monoterpene biosynthetic process	0.0179686	6.53636643960969	0.331318931798817	0.6989700	-1.315281	0.8484448	0.6402458	null	FALSE
GO:0048385	regulation of retinoic acid receptor signaling pathway	0.1668089	-3.32907803263549	-3.22874347947368	1.5797836	-6.913688	0.8858973	0.6457510	null	FALSE
GO:0046622	positive regulation of organ growth	0.0269530	-1.42755125002448	-6.77080807279372	0.8450980	-1.315281	0.8711268	0.6477545	null	FALSE
GO:0009737	response to abscisic acid	2.3538925	-1.34379139715684	5.69967580719972	2.7201593	-3.781098	0.9118466	0.6696275	null	FALSE

[1] “lost_in_posi_GO.txt”

TermID	Name	Frequency	PlotX	PlotY	LogSize	Value	Uniqueness	Dispensability	Representative	Eliminated
GO:0009451	RNA modification	1.4105386	5.31764163679118	0.754369929835893	2.4983106	-42.299053	0.8657301	0.0000000	null	FALSE
GO:0010064	embryonic shoot morphogenesis	0.0044922	4.75782749576447	-4.41252577526445	0.3010300	-6.780537	0.9500264	0.0000000	null	FALSE
GO:0052472	modulation by host of symbiont transcription	0.0044922	-4.22061703882167	-4.63560993928174	0.3010300	-5.743965	0.8690038	0.0000000	null	FALSE
GO:1902184	negative regulation of shoot apical meristem development	0.0044922	-2.32984254507627	5.89394481240723	0.3010300	-8.322884	0.8604211	0.0000000	null	FALSE
GO:1904158	axonemal central apparatus assembly	0.2632906	0.121071388495154	-5.73566801121628	1.7708520	-6.383832	0.9134237	0.0326324	null	FALSE
GO:0033485	cyanidin 3-O-glucoside biosynthetic process	0.0847272	5.91789699424873	4.41851892962031	1.2787536	-9.116936	0.7863560	0.0895787	null	FALSE
GO:0050434	positive regulation of viral transcription	0.0089843	-6.87685777162585	1.81976243902398	0.4771213	-5.148961	0.8855099	0.1002280	null	FALSE
GO:0031098	stress-activated protein kinase signaling cascade	0.3252325	-4.84112938116147	0.667287616655492	1.8633229	-4.952222	0.8477464	0.1287540	null	FALSE
GO:0048660	regulation of smooth muscle cell proliferation	0.1549796	-2.79822774562279	2.9971857694997	1.5440680	-3.111010	0.9071052	0.1795904	null	FALSE
GO:0070848	response to growth factor	0.9496038	-5.92365328976368	-2.13154827518143	2.3263359	-3.109409	0.9399029	0.1812971	null	FALSE
GO:0030244	cellulose biosynthetic process	0.2515610	5.77138786186286	2.89996738530004	1.7558749	-2.313130	0.8397400	0.2639733	null	FALSE
GO:0010727	negative regulation of hydrogen peroxide metabolic process	0.0044922	-2.56139339446724	6.97689626748956	0.3010300	-1.940740	0.8764862	0.2761077	null	FALSE
GO:0009653	anatomical structure morphogenesis	3.8587665	5.36607741685641	-3.85124493222939	2.9344985	-1.681340	0.9593916	0.2816487	null	FALSE
GO:0043406	positive regulation of MAP kinase activity	0.0202147	-5.52957578302348	3.79534427002732	0.6989700	-4.619586	0.8409126	0.2978380	null	FALSE
GO:0042407	cristae formation	0.0089843	-0.641104854169208	-5.92757479982605	0.4771213	-5.459308	0.9463818	0.3096290	null	FALSE
GO:0034307	regulation of ascospore formation	0.0044922	-2.39693547213784	1.24626064669199	0.3010300	-2.411002	0.8502347	0.3222164	null	FALSE
GO:0071602	phytosphingosine biosynthetic process	0.4459718	4.51511075809321	3.68558794303401	2.0000000	-10.064067	0.7340214	0.3281840	null	FALSE
GO:0018008	N-terminal peptidyl-glycine N-myristoylation	0.0089843	5.99733168654235	2.1984585452325	0.4771213	-6.780537	0.8485922	0.3409569	null	FALSE
GO:0048658	anther wall tapetum development	0.0853511	4.04550166327679	-3.75614946324859	1.3010300	-2.860563	0.9326866	0.3741144	null	FALSE
GO:2000117	negative regulation of cysteine-type endopeptidase activity	0.0044922	-3.31373453339264	6.70701765165591	0.3010300	-4.611786	0.8684102	0.3754329	null	FALSE
GO:0010030	positive regulation of seed germination	0.0898432	-5.16167910633517	2.62692100877361	1.3222193	-1.592823	0.8298786	0.3789123	null	FALSE
GO:0031333	negative regulation of protein-containing complex assembly	0.0853511	-3.34536788509139	5.77707846936816	1.3010300	-3.096418	0.8607925	0.3803810	null	FALSE
GO:0002238	response to molecule of fungal origin	0.0853511	-4.83990604684176	-3.18718300733962	1.3010300	-2.175661	0.8956274	0.3822097	null	FALSE
GO:0019471	4-hydroxyproline metabolic process	0.1326792	3.250602293693	5.92343327337831	1.4771213	-4.570910	0.8587831	0.3936324	null	FALSE
GO:0050728	negative regulation of inflammatory response	0.0346538	-4.28914609408947	5.57520859271842	0.9030900	-2.411002	0.8494763	0.3948101	null	FALSE
GO:0009833	plant-type primary cell wall biogenesis	0.1257805	0.765881725392229	-5.82287478195994	1.4623980	-4.679683	0.9269866	0.4045949	null	FALSE
GO:0002237	response to molecule of bacterial origin	0.2111316	-5.18366492052965	-3.08366988861966	1.6812412	-1.494860	0.8899101	0.4142112	null	FALSE
GO:0033542	fatty acid beta-oxidation,unsaturated,even number	0.0044922	3.03880922856698	6.84365842713046	0.3010300	-4.842284	0.8756371	0.4233632	null	FALSE
GO:0051782	negative regulation of cell division	0.0404295	-3.06203123704096	6.18779444728796	1.0000000	-1.358334	0.8663148	0.4365510	null	FALSE
GO:0018401	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	0.0628903	6.55105860554663	0.394026751157163	1.1760913	-4.570910	0.8971229	0.4457143	null	FALSE
GO:0042351	‘de novo’ GDP-L-fucose biosynthetic process	0.0179686	4.42170935154682	4.12895538747748	0.6989700	-4.842284	0.7998257	0.4814266	null	FALSE
GO:0090305	nucleic acid phosphodiester bond hydrolysis	1.6171780	4.29952782768581	0.514446976870726	2.5575072	-40.107639	0.8796109	0.5091922	null	FALSE
GO:0006488	dolichol-linked oligosaccharide biosynthetic process	0.0449216	5.11974482317044	3.51341504881562	1.0413927	-1.695773	0.7826602	0.5112697	null	FALSE
GO:0060776	simple leaf morphogenesis	0.0224608	4.8119200629116	-4.11150530009145	0.7781513	-2.475052	0.9436756	0.5336678	null	FALSE
GO:0042353	fucose biosynthetic process	0.0089843	4.31877960867466	5.72490271400488	0.4771213	-1.940740	0.8434152	0.5389857	null	FALSE
GO:0042450	arginine biosynthetic process via ornithine	0.0134765	4.16042030363498	5.15598445282195	0.6020600	-2.239011	0.8230194	0.5451423	null	FALSE
GO:1904837	beta-catenin-TCF complex assembly	0.5076142	0.37930873028883	-5.48514235495796	2.0569049	-4.842284	0.9099486	0.5451883	null	FALSE
GO:0051131	chaperone-mediated protein complex assembly	0.0494138	0.348981281977853	-5.11939973743461	1.0791812	-2.989676	0.9206363	0.5532566	null	FALSE
GO:0046740	transport of virus in host,cell to cell	0.0089843	-4.49052907391137	-4.59126258927844	0.4771213	-4.842284	0.9030650	0.5611286	null	FALSE
GO:1902290	positive regulation of defense response to oomycetes	0.0449216	-6.1365377770559	3.07829497521755	1.0413927	-2.284022	0.8475028	0.5951678	null	FALSE
GO:0071507	pheromone response MAPK cascade	0.5744351	-4.58841043257489	0.92504261819792	2.1072100	-2.411002	0.7010977	0.6404046	null	FALSE

[1] “lost_in_zmar_GO.txt”

TermID	Name	Frequency	PlotX	PlotY	LogSize	Value	Uniqueness	Dispensability	Representative	Eliminated
GO:0009083	branched-chain amino acid catabolic process	0.1167962	6.97441178171182	-4.42425274788263	1.4313638	-23.825644	0.8187945	0.0000000	null	FALSE
GO:0009846	pollen germination	0.2605453	0.502788762001706	6.07706428430317	1.7708520	-7.057244	0.9413712	0.0000000	null	FALSE
GO:0010199	organ boundary specification between lateral organs and the meristem	0.0404295	-2.07902731137292	6.26848685021275	1.0000000	-2.173048	0.9566396	0.0000000	null	FALSE
GO:0044829	positive regulation by host of viral genome replication	0.0044922	-5.17257360796191	3.92429380679023	0.3010300	-5.002696	1.0000000	0.0000000	null	FALSE
GO:1900153	positive regulation of nuclear-transcribed mRNA catabolic process,deadenylation-dependent decay	0.0748694	-4.35823598850514	-3.09207245880456	1.2304489	-6.908359	0.8022199	0.0000000	null	FALSE
GO:1902418	(+)-abscisic acid D-glucopyranosyl ester transmembrane transport	0.0089843	4.32824478464559	4.90902023859324	0.4771213	-16.818712	0.9211253	0.0207144	null	FALSE
GO:0043617	cellular response to sucrose starvation	0.0179686	6.53209967139054	-0.749188412670094	0.6989700	-11.063985	0.9087316	0.0216481	null	FALSE
GO:0034333	adherens junction assembly	0.0269530	1.00023177620376	1.49312128415212	0.8450980	-2.627603	0.8978029	0.0222344	null	FALSE
GO:0007059	chromosome segregation	0.5480437	-6.18973019486735	3.0781078566807	2.0899051	-5.880062	0.9655979	0.0278349	null	FALSE
GO:0007018	microtubule-based movement	0.2919905	-7.03020142540405	1.88833778746419	1.8195439	-4.860293	0.9446473	0.0301445	null	FALSE
GO:0097502	mannosylation	0.1796864	-4.53083514599784	5.15014155269349	1.6127839	-2.726690	0.9605456	0.0642401	null	FALSE
GO:0046685	response to arsenic-containing substance	0.0718746	7.1418752895972	1.34062380906103	1.2304489	-6.914746	0.9571229	0.1186977	null	FALSE
GO:0080037	negative regulation of cytokinin-activated signaling pathway	0.0224608	-4.77011150217182	-5.39981886872922	0.7781513	-6.440151	0.8737143	0.1404410	null	FALSE
GO:0043966	histone H3 acetylation	0.0853511	3.24346163494396	-7.11882213179068	1.3010300	-5.141144	0.8492390	0.1548915	null	FALSE
GO:0006075	(1->3)-beta-D-glucan biosynthetic process	0.0539059	2.28562662165025	-7.6668501048337	1.1139434	-3.716869	0.9005991	0.1568095	null	FALSE
GO:0106004	tRNA (guanine-N7)-methylation	0.0134765	3.3459894686346	-5.45842423081646	0.6020600	-5.114010	0.8486656	0.2043834	null	FALSE
GO:0015700	arsenite transport	0.0224608	5.23868629846254	4.30301082847087	0.7781513	-13.260514	0.9314680	0.2103830	null	FALSE
GO:0040029	regulation of gene expression,epigenetic	0.4941377	-2.43926539974948	-1.006544186373	2.0453230	-5.265680	0.7601406	0.2756117	null	FALSE
GO:0061326	renal tubule development	0.0628903	-0.272829382628777	6.35533699119978	1.1760913	-2.627603	0.9171585	0.2806508	null	FALSE
GO:1902198	3-methylbut-2-enoyl-CoA(4-) metabolic process	0.0202147	5.23022677511918	-4.85672847380366	0.6989700	-8.703391	0.7880841	0.3105322	null	FALSE
GO:1903902	positive regulation of viral life cycle	0.0089843	-1.63254413386174	-6.99211614526464	0.4771213	-2.883008	0.8794685	0.3214516	null	FALSE
GO:0006368	transcription elongation from RNA polymerase II promoter	0.0763667	3.80796801949895	-5.66340767548355	1.2552725	-2.824435	0.8306791	0.3425941	null	FALSE
GO:0043524	negative regulation of neuron apoptotic process	0.0044922	-6.49688300981293	-3.47148617944613	0.3010300	-2.053021	0.9028342	0.3528003	null	FALSE
GO:0006293	nucleotide-excision repair,preincision complex stabilization	0.0119791	1.46742754893324	-4.08288971081098	0.4771213	-3.979599	0.7106876	0.3556051	null	FALSE
GO:0009556	microsporogenesis	0.1123040	-1.0359764136452	5.34507571185137	1.4149733	-6.737358	0.8486051	0.3691219	null	FALSE
GO:0042048	olfactory behavior	12.9958223	6.7828190027733	0.563965854888703	3.4614985	-2.627603	0.9387128	0.3826800	null	FALSE
GO:0033234	negative regulation of protein sumoylation	0.0044922	-5.62037046439815	-2.58709196714511	0.3010300	-1.637393	0.8725010	0.3941790	null	FALSE
GO:1900150	regulation of defense response to fungus	0.1841786	-3.66665714842563	-6.73404830617374	1.6232493	-2.374111	0.9067682	0.4425117	null	FALSE
GO:1900400	regulation of iron ion import into cell by regulation of transcription from RNA polymerase II promoter	0.2241268	-4.98072962320673	-3.78540924609605	1.6989700	-6.440151	0.8669133	0.4546553	null	FALSE
GO:0000454	snoRNA guided rRNA pseudouridine synthesis	0.0089843	2.58536616714415	-3.10866154526653	0.4771213	-3.979599	0.8019349	0.4609134	null	FALSE
GO:0051729	germline cell cycle switching,mitotic to meiotic cell cycle	0.0044922	-3.34261347862943	-3.36023434771087	0.3010300	-5.002696	0.8151355	0.4685567	null	FALSE
GO:0006396	RNA processing	4.2765374	4.06163027100689	-4.86075653190853	2.9790929	-2.281902	0.7985447	0.4772279	null	FALSE
GO:1901684	arsenate ion transmembrane transport	0.0224608	4.91786732520086	4.63890793668193	0.7781513	-13.048999	0.9039704	0.5053225	null	FALSE
GO:0045948	positive regulation of translational initiation	0.0134765	-4.08022420469404	-2.80304497140739	0.6020600	-1.889705	0.8559779	0.5078317	null	FALSE
GO:0009226	nucleotide-sugar biosynthetic process	0.1886708	4.68085876199137	-5.27053555047513	1.6334685	-1.665611	0.7959752	0.5295428	null	FALSE
GO:0006337	nucleosome disassembly	0.0044922	-0.160900200657534	1.36621635143908	0.3010300	-2.257923	0.8716732	0.5351491	null	FALSE
GO:0080092	regulation of pollen tube growth	0.1662100	-2.5633765322707	-5.2558600443131	1.5797836	-1.916242	0.8989017	0.5428390	null	FALSE
GO:1900000	regulation of anthocyanin catabolic process	0.0044922	-6.08221365640884	-0.651762663323106	0.3010300	-5.114010	0.8940841	0.5482978	null	FALSE
GO:1904211	membrane protein proteolysis involved in retrograde protein transport,ER to cytosol	0.9478460	5.51114097192051	-0.746263057636623	2.3263359	-8.703391	0.6907598	0.5495590	null	FALSE
GO:0010104	regulation of ethylene-activated signaling pathway	0.1257805	-3.96770697874728	-6.29882238972497	1.4623980	-4.578960	0.9003057	0.5524117	null	FALSE
GO:0098660	inorganic ion transmembrane transport	1.9810431	4.8336734180305	4.3820622098223	2.6454223	-2.721593	0.8754988	0.5543701	null	FALSE
GO:0048599	oocyte development	0.0044922	-0.740912499355271	5.80145397650287	0.3010300	-2.568839	0.8462735	0.5577273	null	FALSE
GO:0035194	post-transcriptional gene silencing by RNA	0.3144513	-5.06995305438708	-3.19395833204035	1.8512583	-2.797707	0.8444017	0.5954572	null	FALSE
GO:0042631	cellular response to water deprivation	0.1707021	6.39384740974622	-0.166756206348475	1.5910646	-1.383875	0.8870843	0.6083709	null	FALSE
GO:0055047	generative cell mitosis	0.0134765	-0.554577120578704	3.44627607319742	0.6020600	-2.265927	0.8158557	0.6102124	null	FALSE
GO:0032508	DNA duplex unwinding	0.2919905	-0.516929378908356	1.60956789823626	1.8195439	-3.700286	0.8604762	0.6507685	null	FALSE
GO:0070911	global genome nucleotide-excision repair	0.0119791	4.89972327014075	-2.91323585249144	0.4771213	-2.554750	0.8101733	0.6716500	null	FALSE
GO:0006294	nucleotide-excision repair,preincision complex assembly	0.0134765	3.49621419162347	-1.81408904678293	0.6020600	-1.668643	0.7308664	0.6760592	null	FALSE

[1] “lost_in_zmuel_GO.txt”

TermID	Name	Frequency	PlotX	PlotY	LogSize	Value	Uniqueness	Dispensability	Representative	Eliminated
GO:0001841	neural tube formation	0.0134765	-2.31043922197954	-5.00493164136687	0.6020600	-2.894824	0.9694855	0.0000000	null	FALSE
GO:0006597	spermine biosynthetic process	0.0269530	4.07266317288435	5.80649868724578	0.8450980	-7.719845	0.7979714	0.0000000	null	FALSE
GO:0071461	cellular response to redox state	0.0089843	-6.05564572151133	-3.07487987009115	0.4771213	-1.547943	1.0000000	0.0000000	null	FALSE
GO:0090071	negative regulation of ribosome biogenesis	0.0089843	5.59587677794696	-3.80623419220437	0.4771213	-1.345457	1.0000000	0.0000000	null	FALSE
GO:0089709	L-histidine transmembrane transport	0.0089843	-5.25374540555047	2.85582335384688	0.4771213	-3.309566	0.6163984	0.0189823	null	FALSE
GO:0031037	myosin II filament disassembly	0.2021473	1.52092243528701	-5.14794864041715	1.6627578	-4.228771	0.9311904	0.0230801	null	FALSE
GO:0097502	mannosylation	0.1796864	6.37535782133721	0.453204092187409	1.6127839	-5.271569	0.9067343	0.0577619	null	FALSE
GO:0006490	oligosaccharide-lipid intermediate biosynthetic process	0.0628903	3.65383169780638	4.32348801998217	1.1760913	-7.691661	0.8502187	0.2211080	null	FALSE
GO:0042372	phylloquinone biosynthetic process	0.0449216	2.41050560897544	6.51521620808685	1.0413927	-1.854951	0.8765778	0.2285982	null	FALSE
GO:0015697	quaternary ammonium group transport	0.0269530	-4.36841328050796	4.87330225299373	0.8450980	-2.047144	0.7817432	0.3173486	null	FALSE
GO:0010197	polar nucleus fusion	0.1302727	-0.14760063728534	-5.06100287463002	1.4771213	-1.891385	0.9024962	0.3677093	null	FALSE
GO:0015847	putrescine transport	0.0123534	-4.41290695022827	3.34905937709936	0.4771213	-1.345457	0.7355369	0.4049477	null	FALSE
GO:0072488	ammonium transmembrane transport	0.0269530	-5.15551335694161	3.8487556314516	0.8450980	-2.416930	0.7067819	0.4348824	null	FALSE
GO:0033577	protein glycosylation in endoplasmic reticulum	0.0044922	4.93092171221543	3.01254031123447	0.3010300	-2.894824	0.7895839	0.5737773	null	FALSE

[1] “missing_amphi_vs_all_GO.txt”

TermID	Name	Frequency	PlotX	PlotY	LogSize	Value	Uniqueness	Dispensability	Representative	Eliminated
GO:0010082	regulation of root meristem growth	0.1527335	1.57387087324927	-5.00418210145651	1.5440680	-62.316817	0.8146377	0.0000000	null	FALSE
GO:0048512	circadian behavior	0.0224608	2.72789838312871	-2.73417002986318	0.7781513	-6.692248	0.9967821	0.0000000	null	FALSE
GO:0051762	sesquiterpene biosynthetic process	0.1123040	5.94356870482482	2.84737834969435	1.4149733	-155.412480	0.8463748	0.0000000	null	FALSE
GO:1902025	nitrate import	0.0808589	6.2558642204689	-2.16587012257941	1.2787536	-20.184886	0.9234934	0.0000000	null	FALSE
GO:0080171	lytic vacuole organization	0.0179686	-1.6499044876369	7.27719218722993	0.6989700	-4.451511	0.9370750	0.0215931	null	FALSE
GO:0009626	plant-type hypersensitive response	0.3279278	-5.92472181851773	1.24168055840463	1.8692317	-89.199181	0.8410891	0.0266051	null	FALSE
GO:0009780	photosynthetic NADP+ reduction	0.0044922	-0.114359100830267	0.894309052567777	0.3010300	-7.317334	0.9495474	0.0658471	null	FALSE
GO:0051554	flavonol metabolic process	0.0853511	-3.71510310311494	7.45360617715815	1.3010300	-25.072818	0.9372024	0.0732686	null	FALSE
GO:0090305	nucleic acid phosphodiester bond hydrolysis	1.6171780	3.28164570434955	5.51496580988095	2.5575072	-151.260631	0.8693669	0.1056641	null	FALSE
GO:0080184	response to phenylpropanoid	0.0044922	-5.31920265340267	5.06468865625711	0.3010300	-8.019366	0.9227587	0.1196905	null	FALSE
GO:0015979	photosynthesis	1.1230403	-3.30298067208792	7.83393446488542	2.3996737	-3.877351	0.9361109	0.1284458	null	FALSE
GO:0002230	positive regulation of defense response to virus by host	0.0224608	-0.346670498031968	-6.61751373843277	0.7781513	-16.511798	0.8834373	0.1301418	null	FALSE
GO:0010951	negative regulation of endopeptidase activity	0.2066394	-2.91895706642537	-4.98097288040115	1.6720979	-49.045011	0.8490284	0.1529435	null	FALSE
GO:0080155	regulation of double fertilization forming a zygote and endosperm	0.2335924	-0.441914871100429	-4.48419275347003	1.7242759	-5.581798	0.9086829	0.1582520	null	FALSE
GO:0009786	regulation of asymmetric cell division	0.0718746	-3.49331295100735	-3.48425299454494	1.2304489	-1.856958	0.9150600	0.1632380	null	FALSE
GO:0032886	regulation of microtubule-based process	0.1347648	-3.05892138387047	-3.79369936168348	1.4913617	-4.732038	0.9112813	0.1712600	null	FALSE
GO:0010942	positive regulation of cell death	0.1527335	-2.8394997372618	-5.7605458375691	1.5440680	-12.967396	0.8738844	0.1729524	null	FALSE
GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	0.3773415	1.97494590263525	6.13043905541857	1.9294189	-73.404016	0.8907318	0.1763754	null	FALSE
GO:0018316	peptide cross-linking via L-cystine	0.0044922	1.30015892887282	7.75544521138998	0.3010300	-1.778525	0.9325242	0.1861765	null	FALSE
GO:0043457	regulation of cellular respiration	0.0044922	-5.48711144704988	-4.51557417894327	0.3010300	-2.586543	0.9212950	0.1969718	null	FALSE
GO:0006359	regulation of transcription by RNA polymerase III	0.0044922	-5.23404480083145	-4.79153819090083	0.3010300	-4.435722	0.9187440	0.2065919	null	FALSE
GO:0018364	peptidyl-glutamine methylation	0.0224608	1.70705631289761	7.46946932159289	0.7781513	-5.201144	0.9247028	0.2076085	null	FALSE
GO:0090143	nucleoid organization	0.0179686	-2.18706921982166	7.07738026997019	0.6989700	-3.317884	0.9423272	0.2119540	null	FALSE
GO:0080164	regulation of nitric oxide metabolic process	0.0089843	-5.53617106376712	-4.2528260410757	0.4771213	-2.851155	0.9213570	0.2158309	null	FALSE
GO:2000232	regulation of rRNA processing	0.0134765	-4.7266225711649	-4.89446668397223	0.6020600	-2.371507	0.9141265	0.2216287	null	FALSE
GO:0009819	drought recovery	0.0494138	-5.96210012701563	3.21009913421556	1.0791812	-33.921860	0.8901025	0.2221654	null	FALSE
GO:0009410	response to xenobiotic stimulus	0.0359373	-5.95614867253926	4.46641050306924	0.9542425	-1.585466	0.9224121	0.2284321	null	FALSE
GO:0019218	regulation of steroid metabolic process	0.0269530	-4.76781586999612	-4.40457642692486	0.8450980	-3.561907	0.9107783	0.2286552	null	FALSE
GO:0032350	regulation of hormone metabolic process	0.1257805	-1.15228604764721	-3.19161528310413	1.4623980	-16.977277	0.8593137	0.2320730	null	FALSE
GO:0010310	regulation of hydrogen peroxide metabolic process	0.0539059	-4.1273609859603	-4.4271921249205	1.1139434	-24.429451	0.9084541	0.2326787	null	FALSE
GO:0036371	protein localization to T-tubule	0.0314451	6.29704759187168	-1.16896082095644	0.9030900	-13.799813	0.9197518	0.2340388	null	FALSE
GO:0071466	cellular response to xenobiotic stimulus	0.0224608	-4.67389116109732	3.30146478833028	0.7781513	-20.553402	0.8923160	0.2373516	null	FALSE
GO:0033387	putrescine biosynthetic process from ornithine	0.0123534	3.85903862003257	3.85278116042682	0.4771213	-8.213157	0.8713230	0.2419183	null	FALSE
GO:0009969	xyloglucan biosynthetic process	0.0808589	0.738095644843957	5.32078473575653	1.2787536	-25.974199	0.8386727	0.2530424	null	FALSE
GO:0009962	regulation of flavonoid biosynthetic process	0.1257805	-3.83512132695239	-4.44335654162391	1.4623980	-13.359591	0.9056118	0.2560442	null	FALSE
GO:0072756	cellular response to paraquat	0.0044922	-4.76328405052655	4.10713225358291	0.3010300	-5.896024	0.8970816	0.2629602	null	FALSE
GO:1902075	cellular response to salt	0.0044922	-4.51203999011673	3.83018804882251	0.3010300	-7.118648	0.9024747	0.2629602	null	FALSE
GO:0035998	7,8-dihydroneopterin 3’-triphosphate biosynthetic process	0.0044922	4.13561538969207	4.26474128691829	0.3010300	-7.547472	0.8742499	0.2663207	null	FALSE
GO:0010233	phloem transport	0.0943354	5.10829440833841	-3.23391082160154	1.3424227	-15.280791	0.8876925	0.2779671	null	FALSE
GO:0045168	cell-cell signaling involved in cell fate commitment	0.1662100	2.59876967733159	-4.59797536639168	1.5797836	-40.098376	0.8830619	0.2805344	null	FALSE
GO:0044550	secondary metabolite biosynthetic process	0.6244104	4.24437227448644	2.07131321538452	2.1461280	-109.732139	0.9025627	0.2815131	null	FALSE
GO:0009268	response to pH	0.0359373	-3.64739980147307	1.41224933087983	0.9542425	-4.047383	0.9420042	0.2827029	null	FALSE
GO:0007263	nitric oxide mediated signal transduction	0.0089843	-3.82054566484025	-0.587894385341654	0.4771213	-3.561389	0.8407722	0.2860549	null	FALSE
GO:0009611	response to wounding	1.0062441	-6.40973670605942	1.6321531249974	2.3521825	-2.692392	0.9204062	0.2870502	null	FALSE
GO:0010375	stomatal complex patterning	0.0494138	4.14730044683396	-5.40714461047752	1.0791812	-16.637979	0.9329263	0.2884235	null	FALSE
GO:0000495	box H/ACA RNA 3’-end processing	0.0044922	4.32961326201817	6.01599632714984	0.3010300	-10.241991	0.9046619	0.3020801	null	FALSE
GO:0097366	response to bronchodilator	2.0370454	-5.92813958571739	2.91097756351156	2.6570559	-29.267556	0.8928191	0.3085869	null	FALSE
GO:0033259	plastid DNA replication	0.0089843	1.87497969369584	4.93055393377659	0.4771213	-7.843935	0.8511383	0.3176572	null	FALSE
GO:0009631	cold acclimation	0.2560532	-6.90312429244459	1.64990329808069	1.7634280	-4.906945	0.9237845	0.3235798	null	FALSE
GO:0043153	entrainment of circadian clock by photoperiod	0.0224608	-5.80568271822024	-0.737984164818782	0.7781513	-9.756528	0.8554710	0.3241684	null	FALSE
GO:0016567	protein ubiquitination	3.7105251	2.25296832310551	6.4167038750637	2.9175055	-31.401111	0.8923024	0.3270943	null	FALSE
GO:0010970	transport along microtubule	0.0044922	5.50618976883955	-1.20256224789418	0.3010300	-10.948753	0.9059482	0.3293628	null	FALSE
GO:1904962	plastid to vacuole vesicle-mediated transport	0.0044922	6.53031823391271	-0.979552102984845	0.3010300	-8.533431	0.9256220	0.3293628	null	FALSE
GO:0072344	rescue of stalled ribosome	0.0314451	3.10328718167607	4.69941642204466	0.9030900	-4.047250	0.8755780	0.3317231	null	FALSE
GO:0010555	response to mannitol	0.0673824	-5.7877218516003	3.96336468968157	1.2041200	-7.292125	0.9065467	0.3342636	null	FALSE
GO:0009609	response to symbiotic bacterium	0.0089843	-7.1939964282043	-0.423894578892547	0.4771213	-10.155539	0.9193677	0.3473421	null	FALSE
GO:0015853	adenine transport	0.0179686	6.78023395299454	-1.68096691036139	0.6989700	-3.130204	0.9440687	0.3534636	null	FALSE
GO:0001172	transcription,RNA-templated	0.0359373	3.66305305551005	4.45948327269841	0.9542425	-6.630651	0.8629532	0.3541850	null	FALSE
GO:0048544	recognition of pollen	0.5570280	2.6224880097481	-4.06837448103733	2.0969100	-6.623676	0.8750689	0.3590221	null	FALSE
GO:0042430	indole-containing compound metabolic process	0.3369121	3.68061610500673	5.77989692786423	1.8808136	-11.640271	0.8888277	0.3665151	null	FALSE
GO:0006778	porphyrin-containing compound metabolic process	0.3458964	3.59182956844634	6.05783586059103	1.8920946	-5.415218	0.8906283	0.3675002	null	FALSE
GO:0045056	transcytosis	0.0044922	5.1827836178107	-3.41682131933071	0.3010300	-4.682696	0.8948569	0.3677463	null	FALSE
GO:2000630	positive regulation of miRNA metabolic process	0.0134765	-3.85954424711352	-5.51452069548837	0.6020600	-6.661836	0.8899836	0.3747924	null	FALSE
GO:0090559	regulation of membrane permeability	0.0089843	0.691805848897458	-1.47272742703886	0.4771213	-2.849913	0.9024839	0.3779708	null	FALSE
GO:0000966	RNA 5’-end processing	0.0808589	3.90014884301967	5.81330932135053	1.2787536	-35.554319	0.8901889	0.3797277	null	FALSE
GO:0006334	nucleosome assembly	0.1841786	-1.43177847397067	6.63470306742971	1.6232493	-22.223748	0.9063329	0.3804956	null	FALSE
GO:0048211	Golgi vesicle docking	0.0089843	6.52293794175539	-1.16071846467503	0.4771213	-4.682696	0.9215993	0.3809345	null	FALSE
GO:0009871	jasmonic acid and ethylene-dependent systemic resistance,ethylene mediated signaling pathway	0.0089843	-5.10518147215021	0.406442434609162	0.4771213	-27.782072	0.7887465	0.3823772	null	FALSE
GO:0007267	cell-cell signaling	0.3414042	-6.69182277027222	-2.4507405978285	1.8864907	-5.337881	0.9432407	0.3827963	null	FALSE
GO:0031120	snRNA pseudouridine synthesis	0.0134765	3.43632320399604	6.38402256807553	0.6020600	-3.083481	0.8958199	0.3882252	null	FALSE
GO:0009608	response to symbiont	0.0539059	-7.03222381437853	0.129617116851903	1.1139434	-4.565462	0.9137146	0.3943270	null	FALSE
GO:0010618	aerenchyma formation	0.0089843	3.49105065759863	-6.07406874356997	0.4771213	-17.526209	0.9449728	0.3960626	null	FALSE
GO:1904541	fungal-type cell wall disassembly involved in conjugation with cellular fusion	0.0044922	-1.17512564243593	5.27115910359165	0.3010300	-7.425102	0.9096390	0.3968848	null	FALSE
GO:2000636	positive regulation of primary miRNA processing	0.0134765	-3.77709733685996	-5.58787107971546	0.6020600	-4.418909	0.8885481	0.3973892	null	FALSE
GO:0010438	cellular response to sulfur starvation	0.0314451	-5.50807525855567	0.919302921630928	0.9030900	-7.761069	0.8715320	0.3994265	null	FALSE
GO:0015851	nucleobase transport	0.1212884	6.54951637060877	-1.75204313032454	1.4471580	-5.208378	0.9398440	0.4022496	null	FALSE
GO:0006403	RNA localization	0.4222632	6.09188824772782	-1.57947115072582	1.9777236	-4.389670	0.9368869	0.4054138	null	FALSE
GO:0080027	response to herbivore	0.0808589	-6.87939407778957	0.200601178699232	1.2787536	-29.746406	0.9111889	0.4067789	null	FALSE
GO:0034394	protein localization to cell surface	0.0134765	6.64030684317457	-1.07487727734439	0.6020600	-2.573966	0.9237485	0.4074874	null	FALSE
GO:0002238	response to molecule of fungal origin	0.0853511	-6.19181134018456	2.05204287389853	1.3010300	-8.989515	0.8812072	0.4084989	null	FALSE
GO:0006952	defense response	7.2503481	-5.81992238981806	1.69345365224628	3.2081725	-56.366823	0.9032811	0.4100881	null	FALSE
GO:0071732	cellular response to nitric oxide	0.0179686	-5.30089032981967	3.75738614307031	0.6989700	-24.560403	0.8715674	0.4112191	null	FALSE
GO:0090615	mitochondrial mRNA processing	0.0539059	3.91404211094904	5.95667689263225	1.1139434	-34.637510	0.8870104	0.4120236	null	FALSE
GO:0006124	ferredoxin metabolic process	2.3735457	2.13937973954868	6.57545246293375	2.7234557	-1.836460	0.9015294	0.4126013	null	FALSE
GO:0006260	DNA replication	0.6423790	2.59963772314812	3.9356230202903	2.1583625	-8.131429	0.8780833	0.4139708	null	FALSE
GO:0043100	pyrimidine nucleobase salvage	0.0179686	4.24782594657639	4.38922550547911	0.6989700	-2.341970	0.8758662	0.4142189	null	FALSE
GO:0016045	detection of bacterium	0.0134765	-7.17995528930679	-0.270631416823127	0.6020600	-6.767682	0.9172987	0.4143200	null	FALSE
GO:0007166	cell surface receptor signaling pathway	0.5794888	-4.11754240035901	-1.08275528800649	2.1139434	-1.416541	0.7926556	0.4151148	null	FALSE
GO:1904526	regulation of microtubule binding	0.0044922	-6.89546529060914	-3.65195842965994	0.3010300	-36.680089	0.9235025	0.4216804	null	FALSE
GO:1905255	regulation of RNA binding transcription factor activity	0.0044922	-6.85263478373137	-3.75755778792235	0.3010300	-5.323769	0.9235025	0.4216804	null	FALSE
GO:0035864	response to potassium ion	0.0269530	-6.02236528376844	4.14460803916405	0.8450980	-4.534107	0.9113408	0.4217509	null	FALSE
GO:0080021	response to benzoic acid	0.0044922	-5.40789782256225	4.91679776223151	0.3010300	-5.896024	0.9183643	0.4230449	null	FALSE
GO:1902348	cellular response to strigolactone	0.0044922	-5.04842693590601	4.18490751724772	0.3010300	-2.194635	0.8861429	0.4230449	null	FALSE
GO:0009625	response to insect	0.1482413	-6.84059556464118	0.39560854195794	1.5314789	-57.851440	0.9071220	0.4269324	null	FALSE
GO:0010221	negative regulation of vernalization response	0.0044922	-0.493306773967273	-6.57131091098942	0.3010300	-7.774115	0.8795791	0.4281669	null	FALSE
GO:1901021	positive regulation of calcium ion transmembrane transporter activity	0.0065885	-3.96997581608625	-5.88395103849927	0.3010300	-13.799813	0.8550853	0.4318958	null	FALSE
GO:0032527	protein exit from endoplasmic reticulum	0.0359373	6.38117537141641	-1.4301547451023	0.9542425	-7.057949	0.9118738	0.4324736	null	FALSE
GO:0006432	phenylalanyl-tRNA aminoacylation	0.0134765	3.75149304769202	4.67510893905949	0.6020600	-1.736491	0.8563147	0.4324757	null	FALSE
GO:1900706	positive regulation of siderophore biosynthetic process	0.1379093	-3.23181682949676	-5.17654471776997	1.4913617	-9.429721	0.8650472	0.4414794	null	FALSE
GO:0000304	response to singlet oxygen	0.0583981	-5.84849845600414	3.46210741239882	1.1461280	-31.541887	0.8941146	0.4434063	null	FALSE
GO:0035725	sodium ion transmembrane transport	0.0673824	6.00966602427736	-2.24695458975567	1.2041200	-9.283878	0.9116537	0.4453910	null	FALSE
GO:0045007	depurination	0.1069134	-1.33018237520579	3.46983478769428	1.3802112	-3.935188	0.8068557	0.4469741	null	FALSE
GO:0001101	response to acid chemical	1.7923723	-6.020712204884	2.97209001177954	2.6020600	-7.032843	0.8941018	0.4485887	null	FALSE
GO:0009311	oligosaccharide metabolic process	0.4267553	-0.184985431113329	8.18030796458816	1.9822712	-9.223514	0.9428999	0.4499218	null	FALSE
GO:0002011	morphogenesis of an epithelial sheet	0.0134765	3.35478678141099	-6.1127712969887	0.6020600	-2.355975	0.9469313	0.4499787	null	FALSE
GO:0034626	fatty acid elongation,polyunsaturated fatty acid	0.0179686	5.62728709296074	2.99447958520544	0.6989700	-12.617325	0.8562360	0.4523009	null	FALSE
GO:0015843	methylammonium transport	0.0134765	6.50477460528403	-2.13566524711886	0.6020600	-8.488784	0.9367108	0.4574417	null	FALSE
GO:2000083	negative regulation of L-ascorbic acid biosynthetic process	0.0044922	-3.29285576590939	-5.49519543095016	0.3010300	-12.868980	0.8886893	0.4617814	null	FALSE
GO:0048240	sperm capacitation	0.0044922	3.5842926203503	-4.67070017866925	0.3010300	-6.220075	0.8990019	0.4680595	null	FALSE
GO:0009972	cytidine deamination	0.0404295	4.06857788405557	4.98244821722756	1.0000000	-14.887132	0.8485017	0.4682354	null	FALSE
GO:0045962	positive regulation of development,heterochronic	0.0733720	-1.8078451749087	-3.04055289623334	1.2304489	-26.146973	0.9050035	0.4708316	null	FALSE
GO:0051245	negative regulation of cellular defense response	0.0044922	-0.396168120365922	-6.50341567476516	0.3010300	-11.104116	0.8786469	0.4718007	null	FALSE
GO:0052544	defense response by callose deposition in cell wall	0.0718746	-1.81181658146363	2.3512099410121	1.2304489	-22.469007	0.7919110	0.4735237	null	FALSE
GO:0006314	intron homing	0.0224608	3.12413689494466	6.07895681609935	0.7781513	-1.438530	0.8997380	0.4738444	null	FALSE
GO:0009644	response to high light intensity	0.2785140	-7.32173647243447	1.91483884869625	1.7993405	-8.889919	0.9306229	0.4743964	null	FALSE
GO:0006885	regulation of pH	0.2515610	-0.227645393771658	-2.50885789114566	1.7558749	-15.718231	0.8759538	0.4774270	null	FALSE
GO:0050821	protein stabilization	0.1437492	-0.0290696381149157	-2.29270042702356	1.5185139	-3.583269	0.8835571	0.4825149	null	FALSE
GO:0006672	ceramide metabolic process	0.1212884	5.2935681963482	4.61740591498444	1.4471580	-5.977702	0.8580154	0.4834454	null	FALSE
GO:0034090	maintenance of meiotic sister chromatid cohesion	0.0179686	-1.30663100138138	5.46919238253425	0.6989700	-11.006435	0.9020542	0.4861281	null	FALSE
GO:0051607	defense response to virus	0.2246081	-6.48227539812299	0.727477908654755	1.7075702	-2.417605	0.8968545	0.4865194	null	FALSE
GO:2000023	regulation of lateral root development	0.1257805	-1.9023784625803	-3.29703713874356	1.4623980	-2.770101	0.8880428	0.4901117	null	FALSE
GO:0033292	T-tubule organization	0.0716381	1.23731661366563	0.509054948301204	1.2041200	-13.799813	0.8768482	0.4928611	null	FALSE
GO:0051090	regulation of DNA-binding transcription factor activity	0.0539059	-4.29664041926877	-4.85434585363956	1.1139434	-3.268476	0.8894667	0.4981222	null	FALSE
GO:0036159	inner dynein arm assembly	0.0179686	-1.17808314382088	6.23451283250406	0.6989700	-4.478424	0.9071048	0.4982292	null	FALSE
GO:0010150	leaf senescence	0.5076142	3.80643899527177	-5.31857030096143	2.0569049	-22.322993	0.9137213	0.5023722	null	FALSE
GO:0032870	cellular response to hormone stimulus	4.2316158	-5.51422153160636	2.63093277266527	2.9745117	-25.204027	0.8260952	0.5032008	null	FALSE
GO:0010324	membrane invagination	0.0044922	-2.06096654523781	7.34427736824787	0.3010300	-5.425451	0.9437924	0.5057439	null	FALSE
GO:0009451	RNA modification	1.4105386	3.1192977473502	5.74532236129945	2.4983106	-129.609917	0.8636467	0.5091922	null	FALSE
GO:0044245	polysaccharide digestion	11.9626252	4.33089701948988	-5.10165303300287	3.4255342	-8.477229	0.9150699	0.5111975	null	FALSE
GO:0036309	protein localization to M-band	0.2713265	6.15995068537294	-1.36905263226265	1.7853298	-13.799813	0.9057202	0.5168809	null	FALSE
GO:0009089	lysine biosynthetic process via diaminopimelate	0.0673824	4.21065159462414	3.19218365064481	1.2041200	-5.170693	0.8679299	0.5195745	null	FALSE
GO:0070667	negative regulation of mast cell proliferation	0.1886708	-1.89494287172635	-4.9902314897882	1.6334685	-5.323769	0.8816263	0.5215364	null	FALSE
GO:0010258	NADH dehydrogenase complex (plastoquinone) assembly	0.0359373	-1.46577497244429	6.98377080464068	0.9542425	-7.397841	0.9251752	0.5225012	null	FALSE
GO:0007095	mitotic G2 DNA damage checkpoint signaling	0.0269530	-3.666647401009	-0.921710380794678	0.8450980	-3.532261	0.7809686	0.5255739	null	FALSE
GO:0009093	cysteine catabolic process	0.0134765	4.92648094357032	3.08728546412622	0.6020600	-7.249705	0.8844616	0.5312752	null	FALSE
GO:2000280	regulation of root development	0.3593729	-2.04089967597253	-3.68555270509737	1.9084850	-57.962462	0.8936830	0.5325899	null	FALSE
GO:0051070	galactomannan biosynthetic process	0.0044922	1.92186233874534	3.29638743257381	0.3010300	-5.647766	0.9124074	0.5326031	null	FALSE
GO:0010275	NAD(P)H dehydrogenase complex assembly	0.0494138	-1.57967822821236	6.92252388952078	1.0791812	-16.151049	0.9236632	0.5344635	null	FALSE
GO:0009961	response to 1-aminocyclopropane-1-carboxylic acid	0.0179686	-5.54311916685725	4.43555050915223	0.6989700	-8.733801	0.9064142	0.5385267	null	FALSE
GO:0071422	succinate transmembrane transport	0.0179686	6.35536837211201	-2.31567160057778	0.6989700	-9.471159	0.9126433	0.5392725	null	FALSE
GO:0001561	fatty acid alpha-oxidation	0.0089843	6.11777838367872	2.99930827219173	0.4771213	-2.661712	0.8657356	0.5404419	null	FALSE
GO:0048462	carpel formation	0.0179686	3.56678198247652	-5.21969173993984	0.6989700	-20.294388	0.9062722	0.5433997	null	FALSE
GO:0009617	response to bacterium	2.1113158	-6.42330422944953	0.942841335502142	2.6730209	-16.475633	0.8837821	0.5453319	null	FALSE
GO:1901684	arsenate ion transmembrane transport	0.0224608	6.07973579391676	-2.47323645651463	0.7781513	-1.535372	0.9151066	0.5470253	null	FALSE
GO:2000013	regulation of arginine biosynthetic process via ornithine	0.0044922	-5.02632751977386	-5.09499911298055	0.3010300	-2.586543	0.9127823	0.5494059	null	FALSE
GO:0071731	response to nitric oxide	0.0269530	-5.70424409873755	4.25774758646371	0.8450980	-1.633238	0.9044707	0.5514906	null	FALSE
GO:0000914	phragmoplast assembly	0.0179686	-1.81663895186878	6.45602170273703	0.6989700	-2.811388	0.9215273	0.5551364	null	FALSE
GO:0035874	cellular response to copper ion starvation	0.0089843	-5.52983897402297	0.701970463077253	0.4771213	-1.331841	0.8812321	0.5580156	null	FALSE
GO:0044403	biological process involved in symbiotic interaction	0.4312475	-7.5921261132557	-1.13838980379912	1.9867717	-12.489256	0.9544023	0.5582824	null	FALSE
GO:1990169	stress response to copper ion	0.0224608	-6.07504196930694	3.59816516265846	0.7781513	-3.561907	0.9064163	0.5582896	null	FALSE
GO:0002239	response to oomycetes	0.4177710	-6.69285176961005	0.640868609649434	1.9731279	-14.752078	0.8992269	0.5594759	null	FALSE
GO:0006468	protein phosphorylation	5.0671578	2.41821441058104	6.09282048619451	3.0526939	-19.955290	0.8790911	0.5616227	null	FALSE
GO:0061723	glycophagy	0.0112304	0.696888366038099	4.09577299090729	0.4771213	-9.144910	0.9003162	0.5621264	null	FALSE
GO:0000375	RNA splicing,via transesterification reactions	1.1140560	3.38903867542441	5.59042072359197	2.3961993	-5.862753	0.8660784	0.5628313	null	FALSE
GO:0048509	regulation of meristem development	0.2964826	-1.99636987683753	-3.57952388139091	1.8260748	-24.496572	0.8951924	0.5634440	null	FALSE
GO:1902265	abscisic acid homeostasis	0.0089843	0.83764682624624	-1.64366524696628	0.4771213	-5.647414	0.9007760	0.5661740	null	FALSE
GO:0010469	regulation of signaling receptor activity	0.3059115	-1.89772826120212	-5.77303765634257	1.8260748	-19.981450	0.8293042	0.5703573	null	FALSE
GO:0016099	monoterpenoid biosynthetic process	0.0044922	6.23638261406166	2.68574921139811	0.3010300	-37.842515	0.8749184	0.5751028	null	FALSE
GO:0010114	response to red light	0.2785140	-7.30404408793029	2.02180540244781	1.7993405	-4.245214	0.9306229	0.5759002	null	FALSE
GO:0051258	protein polymerization	0.1347648	-1.56075429569914	6.80173353246935	1.4913617	-5.247348	0.9184843	0.5760110	null	FALSE
GO:0080003	thalianol metabolic process	0.0089843	6.09670347282851	3.8576801726125	0.4771213	-18.906081	0.8726602	0.5772455	null	FALSE
GO:0046330	positive regulation of JNK cascade	0.0179686	-1.61723234299582	-6.37193039426903	0.6989700	-7.242124	0.8477208	0.5779213	null	FALSE
GO:0097167	circadian regulation of translation	0.0044922	1.23961969743353	-4.94239374008277	0.3010300	-2.194635	0.8691245	0.5780757	null	FALSE
GO:0007584	response to nutrient	0.0583981	-6.22656913527542	2.18424182545382	1.1461280	-4.526773	0.8948132	0.5817840	null	FALSE
GO:1902290	positive regulation of defense response to oomycetes	0.0449216	-1.46298136431148	-6.41156383065152	1.0413927	-6.031032	0.8577687	0.5823779	null	FALSE
GO:0061370	testosterone biosynthetic process	0.0867445	4.82827534536087	3.90478477859966	1.3010300	-11.851829	0.8192482	0.5838530	null	FALSE
GO:1901599	(-)-pinoresinol biosynthetic process	0.0089843	4.36049913731192	3.76030212107152	0.4771213	-1.703570	0.8599142	0.5842097	null	FALSE
GO:0071229	cellular response to acid chemical	0.2740218	-5.09105165868432	2.88830096085879	1.7923917	-7.395724	0.8669923	0.5845806	null	FALSE
GO:0015886	heme transport	0.0718746	6.31322134524813	-2.01823684472742	1.2304489	-2.007792	0.9289409	0.5868171	null	FALSE
GO:0080037	negative regulation of cytokinin-activated signaling pathway	0.0224608	-1.09310374393251	-6.0656389000366	0.7781513	-7.201643	0.8501800	0.5870088	null	FALSE
GO:0006812	cation transport	2.2505728	6.11092793560469	-1.99627539769875	2.7007037	-11.834559	0.9162810	0.5885695	null	FALSE
GO:0061760	antifungal innate immune response	0.0044922	-6.9159447825445	-0.179756341946732	0.3010300	-14.684490	0.9157478	0.5885794	null	FALSE
GO:0033007	negative regulation of mast cell activation involved in immune response	0.0898432	-1.80141773142966	-5.78546740708715	1.3222193	-5.323769	0.8340324	0.5888528	null	FALSE
GO:0003341	cilium movement	0.0059895	2.74920070953338	-0.892401101621134	0.3010300	-10.740017	0.9554976	0.5897750	null	FALSE
GO:0048587	regulation of short-day photoperiodism,flowering	0.0494138	-0.488127501447787	-6.23736362073188	1.0791812	-4.157373	0.8805683	0.5918906	null	FALSE
GO:0007165	signal transduction	8.3913571	-4.1034045678184	-1.23190059064843	3.2716093	-124.739426	0.7370332	0.5942163	null	FALSE
GO:0009664	plant-type cell wall organization	0.6693320	-1.60621120518478	6.41478956997256	2.1760913	-9.877092	0.9183848	0.5956427	null	FALSE
GO:0060294	cilium movement involved in cell motility	0.0059895	5.16440894937027	-1.51605971115238	0.4771213	-8.400755	0.9160881	0.5985002	null	FALSE
GO:0006164	purine nucleotide biosynthetic process	0.5390593	4.04820043874665	4.49544630993696	2.0827854	-9.283372	0.8166479	0.6003424	null	FALSE
GO:0098869	cellular oxidant detoxification	0.7591752	-5.32974055646298	2.71026574238479	2.2304489	-3.378602	0.8585189	0.6019382	null	FALSE
GO:0009684	indoleacetic acid biosynthetic process	0.0494138	3.10021879602534	2.82011914209975	1.0791812	-7.549382	0.7387055	0.6020967	null	FALSE
GO:0080181	lateral root branching	0.0134765	3.71695150430292	-5.58872810284751	0.6020600	-7.129021	0.9239176	0.6026219	null	FALSE
GO:0071465	cellular response to desiccation	0.0763667	-5.56201702464655	2.00720731297091	1.2552725	-4.454452	0.8246449	0.6040405	null	FALSE
GO:0009877	nodulation	0.0988275	3.49863065755762	-5.95191199227334	1.3617278	-19.544215	0.9358429	0.6076887	null	FALSE
GO:0010423	negative regulation of brassinosteroid biosynthetic process	0.0044922	-1.10144931234666	-3.94616217364851	0.3010300	-2.632486	0.8542806	0.6098624	null	FALSE
GO:0071236	cellular response to antibiotic	0.8690604	-5.26566462549818	2.64830618522293	2.2878017	-12.890584	0.8587557	0.6122276	null	FALSE
GO:0030639	polyketide biosynthetic process	0.0179686	4.71483916288047	1.8743713576189	0.6989700	-6.693629	0.9163210	0.6137667	null	FALSE
GO:0000350	generation of catalytic spliceosome for second transesterification step	0.0134765	1.02896077542818	5.63999858040852	0.6020600	-1.856958	0.8543752	0.6146354	null	FALSE
GO:0010930	negative regulation of auxin mediated signaling pathway	0.0134765	-1.0015074903543	-6.18291370915267	0.6020600	-2.569735	0.8546739	0.6147577	null	FALSE
GO:0080126	ovary septum development	0.0044922	3.77281828353953	-5.03604253284465	0.3010300	-15.121344	0.9267345	0.6149303	null	FALSE
GO:0006264	mitochondrial DNA replication	0.0404295	2.56489706149435	3.33244903225496	1.0000000	-2.425188	0.8979845	0.6158060	null	FALSE
GO:0015709	thiosulfate transport	0.0134765	6.22783798365046	-2.57276526680017	0.6020600	-17.014164	0.9349286	0.6161640	null	FALSE
GO:0010376	stomatal complex formation	0.0224608	3.6067394367531	-5.58185288903341	0.7781513	-6.623515	0.9162003	0.6165396	null	FALSE
GO:0071211	protein targeting to vacuole involved in autophagy	0.0089843	5.9162399785439	-0.54575568045671	0.4771213	-8.533431	0.8689251	0.6223831	null	FALSE
GO:0009099	valine biosynthetic process	0.0404295	4.32733926536482	3.10910840058874	1.0000000	-2.075832	0.8721197	0.6234625	null	FALSE
GO:0071446	cellular response to salicylic acid stimulus	0.2605453	-5.29559372533519	3.20814931746083	1.7708520	-19.892445	0.8536174	0.6241860	null	FALSE
GO:0045926	negative regulation of growth	0.1751943	-1.20979751443961	-4.83351567450864	1.6020600	-49.287844	0.8851154	0.6297772	null	FALSE
GO:0048584	positive regulation of response to stimulus	1.1320246	-1.82655740141672	-5.65851526884526	2.4031205	-3.398922	0.8315580	0.6332632	null	FALSE
GO:0000028	ribosomal small subunit assembly	0.1527335	-1.40454363799705	6.73769795960236	1.5440680	-1.314658	0.9110900	0.6348736	null	FALSE
GO:0090057	root radial pattern formation	0.0314451	3.98407571718446	-5.43614006249208	0.9030900	-7.618934	0.9266296	0.6353165	null	FALSE
GO:0080110	sporopollenin biosynthetic process	0.0359373	2.37202483368415	2.27518636768785	0.9542425	-4.321347	0.7717040	0.6360522	null	FALSE
GO:0015700	arsenite transport	0.0224608	6.27686209859026	-2.48024117082628	0.7781513	-7.398065	0.9329468	0.6364426	null	FALSE
GO:0005995	melibiose catabolic process	0.0157226	0.397324112532531	7.65751113769403	0.6020600	-2.194635	0.9211093	0.6387332	null	FALSE
GO:0042773	ATP synthesis coupled electron transport	0.2830062	-0.0869829508805779	1.31435201810959	1.8061800	-6.661836	0.9341820	0.6395535	null	FALSE
GO:0035024	negative regulation of Rho protein signal transduction	0.0044922	-0.855157126063627	-6.40047357416876	0.3010300	-2.943564	0.8613183	0.6447047	null	FALSE
GO:0030994	primary cell septum disassembly	0.0817573	-2.01111001668778	6.75010834439389	1.2787536	-5.157608	0.9276838	0.6452209	null	FALSE
GO:1905034	regulation of antifungal innate immune response	0.0089843	-0.137554548405214	-6.7517538252118	0.4771213	-3.767121	0.8883255	0.6459136	null	FALSE
GO:0071452	cellular response to singlet oxygen	0.0359373	-5.42511775991366	3.14986514416403	0.9542425	-9.208437	0.8623964	0.6459430	null	FALSE
GO:0010500	transmitting tissue development	0.0179686	3.68622551447552	-4.9932711417208	0.6989700	-8.013000	0.9225241	0.6473838	null	FALSE
GO:0010337	regulation of salicylic acid metabolic process	0.0943354	-3.80367510899612	-4.79165993054483	1.3424227	-10.612594	0.8971729	0.6479341	null	FALSE
GO:0006203	dGTP catabolic process	0.0134765	4.29811128594646	4.88410555099655	0.6020600	-1.438530	0.8543665	0.6484478	null	FALSE
GO:0045490	pectin catabolic process	0.4447240	1.19489507821084	6.64125931234505	2.0000000	-3.160321	0.9098279	0.6495072	null	FALSE
GO:0035246	peptidyl-arginine N-methylation	0.0539059	1.80623734937513	7.3298731664289	1.1139434	-3.309595	0.9192475	0.6502278	null	FALSE
GO:0015708	silicic acid import across plasma membrane	0.0331729	6.1531801799777	-2.39317512651388	0.9030900	-1.703570	0.9104713	0.6528448	null	FALSE
GO:0042742	defense response to bacterium	1.6216702	-6.30405027804355	1.0559673796928	2.5587086	-8.042952	0.8733747	0.6545694	null	FALSE
GO:0012502	induction of programmed cell death	0.0044922	-3.18777876645016	-6.52572726624674	0.3010300	-8.366183	0.8981821	0.6549617	null	FALSE
GO:1902042	negative regulation of extrinsic apoptotic signaling pathway via death domain receptors	0.0044922	-1.15960473599761	-6.43273701128778	0.3010300	-3.702997	0.8570216	0.6549617	null	FALSE
GO:0016127	sterol catabolic process	0.0089843	5.41519874032245	4.26640844022998	0.4771213	-3.230535	0.8669013	0.6550754	null	FALSE
GO:0034434	sterol esterification	0.0089843	6.0006514603166	4.03757729447741	0.4771213	-3.230535	0.8773626	0.6550754	null	FALSE
GO:0046622	positive regulation of organ growth	0.0269530	-2.23811153579675	-4.48370371206169	0.8450980	-6.195458	0.8717650	0.6613690	null	FALSE
GO:0030150	protein import into mitochondrial matrix	0.1257805	4.84082841821774	-0.456821268238236	1.4623980	-1.657532	0.8584109	0.6622637	null	FALSE
GO:0000226	microtubule cytoskeleton organization	0.7232379	-1.20149233555314	6.03882680477923	2.2095150	-2.393661	0.9041823	0.6711268	null	FALSE
GO:0045338	farnesyl diphosphate metabolic process	0.0898432	6.84067410038484	2.75551393859001	1.3222193	-20.990397	0.8699702	0.6735153	null	FALSE
GO:0046949	fatty-acyl-CoA biosynthetic process	0.0044922	4.4548515808267	4.31354269449332	0.3010300	-1.706168	0.8532950	0.6744170	null	FALSE
GO:0070562	regulation of vitamin D receptor signaling pathway	0.1497720	-1.24474028160969	-6.04614961299736	1.5314789	-5.304743	0.8499436	0.6776065	null	FALSE
GO:0080143	regulation of amino acid export	0.0314451	-4.56250510423148	-3.66396009251208	0.9030900	-13.226843	0.8818763	0.6811918	null	FALSE
GO:0071368	cellular response to cytokinin stimulus	0.3593729	-5.20946486648927	2.91294473370369	1.9084850	-8.168346	0.8598163	0.6812564	null	FALSE
GO:0048385	regulation of retinoic acid receptor signaling pathway	0.1668089	-1.32713837038976	-5.98023351420311	1.5797836	-5.016143	0.8528541	0.6835973	null	FALSE
GO:0050829	defense response to Gram-negative bacterium	0.0988275	-6.5739571645273	0.50309526009577	1.3617278	-2.811388	0.8987720	0.6840535	null	FALSE
GO:0051315	attachment of mitotic spindle microtubules to kinetochore	0.0179686	4.31586624617261	-0.28298956218939	0.6989700	-1.830805	0.8685047	0.6841486	null	FALSE
GO:0009852	auxin catabolic process	0.0089843	1.20089427719783	-0.391658102717127	0.4771213	-7.282761	0.8347516	0.6856031	null	FALSE
GO:1900449	regulation of glutamate receptor signaling pathway	0.1735903	-1.2707809078186	-5.92181454560292	1.5682017	-3.702997	0.8524428	0.6858401	null	FALSE
GO:2000028	regulation of photoperiodism,flowering	0.3324199	-0.931073564355959	-5.80196808323297	1.8750613	-1.891045	0.8637784	0.6877818	null	FALSE
GO:0006722	triterpenoid metabolic process	0.0898432	7.13682654373838	2.2818090730336	1.3222193	-3.946282	0.8793921	0.6931108	null	FALSE
GO:0006813	potassium ion transport	0.4222632	6.08568925667239	-2.1086303648313	1.9777236	-8.845589	0.9242419	0.6936154	null	FALSE
GO:0019371	cyclooxygenase pathway	0.0044922	5.73225964366003	2.9667675491943	0.3010300	-2.661712	0.8661318	0.6936856	null	FALSE
GO:0071395	cellular response to jasmonic acid stimulus	0.4222632	-5.38188359279808	3.00337573780682	1.9777236	-25.690645	0.8447806	0.6939872	null	FALSE
GO:0001680	tRNA 3’-terminal CCA addition	0.0224608	4.14810183631456	5.92880625785556	0.7781513	-7.087420	0.8948854	0.6940175	null	FALSE
GO:0048767	root hair elongation	0.3099591	3.62174390162289	-5.37669002475848	1.8450980	-7.087678	0.8687271	0.6947824	null	FALSE
GO:0071281	cellular response to iron ion	0.0089843	-5.14188942510687	3.80381804743598	0.4771213	-4.876646	0.8837993	0.6952859	null	FALSE

[1] “missing_aquatics_GO.txt”

TermID	Name	Frequency	PlotX	PlotY	LogSize	Value	Uniqueness	Dispensability	Representative	Eliminated
GO:0009819	drought recovery	0.0494138	-6.3723868961843	-3.57671315692725	1.0791812	-34.412318	0.8639859	0.0000000	null	FALSE
GO:0010082	regulation of root meristem growth	0.1527335	1.57523609750152	0.631794198050091	1.5440680	-104.101084	0.7320100	0.0000000	null	FALSE
GO:0051762	sesquiterpene biosynthetic process	0.1123040	5.26668279508338	3.85462355335466	1.4149733	-140.122519	0.8645610	0.0000000	null	FALSE
GO:0006335	DNA replication-dependent chromatin assembly	0.0179686	-6.15221090509168	4.21336721423217	0.6989700	-3.563722	0.9488253	0.0215931	null	FALSE
GO:0036371	protein localization to T-tubule	0.0314451	-3.27565542097753	5.53039942879886	0.9030900	-20.442318	0.9326830	0.0224064	null	FALSE
GO:0051554	flavonol metabolic process	0.0853511	-2.79344123440471	3.26553766139583	1.3010300	-36.919497	0.9565730	0.0732686	null	FALSE
GO:0000966	RNA 5’-end processing	0.0808589	6.56043114090435	1.45323631234751	1.2787536	-54.651110	0.9320965	0.0829109	null	FALSE
GO:0009311	oligosaccharide metabolic process	0.4267553	-4.7815118519144	3.66536253668606	1.9822712	-4.513778	0.9631681	0.0941713	null	FALSE
GO:0097503	sialylation	0.0134765	7.37244821681309	-0.831689060000038	0.6020600	-2.841938	0.9705268	0.1067597	null	FALSE
GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	0.3773415	6.75812859528918	0.101350043975459	1.9294189	-49.521214	0.9251523	0.1347712	null	FALSE
GO:0006885	regulation of pH	0.2515610	4.71683692921115	-2.51154149034752	1.7558749	-21.919135	0.8488315	0.1360520	null	FALSE
GO:0009962	regulation of flavonoid biosynthetic process	0.1257805	4.22381717255953	-5.14936815091991	1.4623980	-25.385631	0.8919468	0.1471751	null	FALSE
GO:0010469	regulation of signaling receptor activity	0.3059115	1.18569983560436	-5.47680051523876	1.8260748	-34.419769	0.8068734	0.1578322	null	FALSE
GO:0009617	response to bacterium	2.1113158	-6.35664826434296	-1.22928709427861	2.6730209	-28.320920	0.8416671	0.1641436	null	FALSE
GO:0010942	positive regulation of cell death	0.1527335	0.190752753646908	-6.0437191812972	1.5440680	-10.877695	0.8489993	0.1784806	null	FALSE
GO:0060294	cilium movement involved in cell motility	0.0059895	-4.17737449716536	5.6341517288116	0.4771213	-16.454330	0.9246009	0.1997941	null	FALSE
GO:0080184	response to phenylpropanoid	0.0044922	-5.53643838799357	-5.74555140621465	0.3010300	-12.881606	0.8966471	0.2014785	null	FALSE
GO:0010310	regulation of hydrogen peroxide metabolic process	0.0539059	1.02647253367766	-3.94241493302564	1.1139434	-5.241183	0.8943056	0.2101184	null	FALSE
GO:2000083	negative regulation of L-ascorbic acid biosynthetic process	0.0044922	3.00268488599884	-6.81595111575557	0.3010300	-19.161283	0.8895867	0.2131819	null	FALSE
GO:0071466	cellular response to xenobiotic stimulus	0.0224608	-5.28939063834954	-4.80960122200679	0.7781513	-9.352212	0.8664891	0.2217277	null	FALSE
GO:0097167	circadian regulation of translation	0.0044922	0.811941860179947	0.105022358696347	0.3010300	-5.541363	0.8421098	0.2266615	null	FALSE
GO:0009410	response to xenobiotic stimulus	0.0359373	-5.98433034605596	-5.10905649554015	0.9542425	-9.193698	0.8985267	0.2284321	null	FALSE
GO:1902025	nitrate import	0.0808589	-2.62013241895646	6.23401565045759	1.2787536	-16.147194	0.9578419	0.2340388	null	FALSE
GO:0009611	response to wounding	1.0062441	-6.75746649550849	-2.24893302587259	2.3521825	-7.598088	0.8882125	0.2425631	null	FALSE
GO:0009865	pollen tube adhesion	0.0134765	0.0798005169730449	2.8492459560591	0.6020600	-5.970647	0.8594145	0.2428352	null	FALSE
GO:0019756	cyanogenic glycoside biosynthetic process	0.1069562	6.26064369867262	2.02221261756769	1.4313638	-34.342172	0.8892980	0.2582345	null	FALSE
GO:0033292	T-tubule organization	0.0716381	0.104178078852977	5.25393239109466	1.2041200	-20.442318	0.8637325	0.2722071	null	FALSE
GO:0010233	phloem transport	0.0943354	-1.33626352273233	4.89994923919086	1.3424227	-4.279925	0.8416486	0.2779671	null	FALSE
GO:0006898	receptor-mediated endocytosis	0.1976551	-2.93550951100992	6.23608569211604	1.6532125	-2.571880	0.9422735	0.2825621	null	FALSE
GO:0001101	response to acid chemical	1.7923723	-6.04292603130197	-3.62204088612097	2.6020600	-8.247666	0.8598671	0.3051929	null	FALSE
GO:0010305	leaf vascular tissue pattern formation	0.1347648	0.848817844169126	4.93927392592633	1.4913617	-2.850372	0.8854660	0.3105240	null	FALSE
GO:0010114	response to red light	0.2785140	-4.97664355595559	-0.456896362705918	1.7993405	-10.626773	0.9133953	0.3255957	null	FALSE
GO:0016567	protein ubiquitination	3.7105251	6.74764646655224	0.498554545824939	2.9175055	-25.711249	0.9233067	0.3270943	null	FALSE
GO:0048312	intracellular distribution of mitochondria	0.0044922	-4.06755073537192	5.09379806707566	0.3010300	-2.509467	0.9258702	0.3293628	null	FALSE
GO:0032504	multicellular organism reproduction	0.8040969	0.188273457743174	3.76378482188368	2.2552725	-3.443456	0.8974981	0.3415835	null	FALSE
GO:1903553	positive regulation of extracellular exosome assembly	0.0044922	-1.04858715653163	-7.55334175851899	0.3010300	-2.509467	0.8744927	0.3498300	null	FALSE
GO:0031542	positive regulation of anthocyanin biosynthetic process	0.0179686	-0.528973666170086	-6.96983458650384	0.6989700	-3.567657	0.8767168	0.3513679	null	FALSE
GO:0035600	tRNA methylthiolation	0.0089843	6.68430008443985	1.01164625211634	0.4771213	-3.409318	0.9360372	0.3671116	null	FALSE
GO:0010275	NAD(P)H dehydrogenase complex assembly	0.0494138	-6.34092999059099	4.17066887053067	1.0791812	-1.784576	0.9450963	0.3768295	null	FALSE
GO:0009867	jasmonic acid mediated signaling pathway	0.3998023	-2.89310393765789	-3.84466976336451	1.9542425	-28.343365	0.7074973	0.3795777	null	FALSE
GO:0045314	regulation of compound eye photoreceptor development	0.0044922	4.87943755300422	-4.54881566261978	0.3010300	-2.388180	0.8774899	0.3911017	null	FALSE
GO:0090559	regulation of membrane permeability	0.0089843	6.10719895819844	-2.30680467428073	0.4771213	-5.932708	0.8819490	0.3950913	null	FALSE
GO:0010618	aerenchyma formation	0.0089843	2.29448201257775	5.49571446684323	0.4771213	-20.647083	0.9230621	0.3960626	null	FALSE
GO:0006355	regulation of transcription,DNA-templated	10.5880239	1.81405221537266	-4.48109987253077	3.3725438	-2.480747	0.8328582	0.3986838	null	FALSE
GO:0007267	cell-cell signaling	0.3414042	-3.6200077205312	-7.3166671985038	1.8864907	-4.559472	0.9226436	0.4013598	null	FALSE
GO:0007584	response to nutrient	0.0583981	-6.5701625180835	-2.74565766522267	1.1461280	-5.303508	0.8636664	0.4049784	null	FALSE
GO:0007369	gastrulation	0.0134765	1.06243345833135	5.32817734499298	0.6020600	-2.330386	0.8906580	0.4064931	null	FALSE
GO:0034394	protein localization to cell surface	0.0134765	-3.40316368748849	5.75675754794607	0.6020600	-8.422620	0.9393170	0.4074874	null	FALSE
GO:0016045	detection of bacterium	0.0134765	-7.07440207580513	0.0731946796430655	0.6020600	-7.398400	0.8830454	0.4090250	null	FALSE
GO:0006952	defense response	7.2503481	-5.8834110033833	-2.2420404961381	3.2081725	-112.187033	0.8624958	0.4100881	null	FALSE
GO:0010221	negative regulation of vernalization response	0.0044922	1.87707937236051	-7.39319710409865	0.3010300	-13.569914	0.8696346	0.4116470	null	FALSE
GO:0090615	mitochondrial mRNA processing	0.0539059	6.6850680215135	1.37777389664781	1.1139434	-34.286111	0.9298481	0.4120236	null	FALSE
GO:0009871	jasmonic acid and ethylene-dependent systemic resistance,ethylene mediated signaling pathway	0.0089843	-4.19056962787932	-2.83516459348254	0.4771213	-11.901183	0.7436290	0.4175401	null	FALSE
GO:0001666	response to hypoxia	1.1499933	-6.24162914090118	-2.09794408627631	2.4099331	-2.354401	0.8821888	0.4246154	null	FALSE
GO:0007166	cell surface receptor signaling pathway	0.5794888	-2.16152402180048	-3.59538036638781	2.1139434	-9.350409	0.7520413	0.4253892	null	FALSE
GO:0044364	disruption of cells of other organism	0.0269530	-7.51034403797187	1.20440407148897	0.8450980	-2.509467	0.9414822	0.4301109	null	FALSE
GO:1904526	regulation of microtubule binding	0.0044922	3.38642262987192	-0.703993019504944	0.3010300	-9.815879	0.9064320	0.4321507	null	FALSE
GO:1905255	regulation of RNA binding transcription factor activity	0.0044922	3.6411870369917	-0.822859421624895	0.3010300	-9.134702	0.9064320	0.4321507	null	FALSE
GO:0003283	atrial septum development	1.6401201	1.26790892582749	4.43648481874295	3.2564772	-6.840108	0.8381908	0.4359177	null	FALSE
GO:1901021	positive regulation of calcium ion transmembrane transporter activity	0.0065885	-0.334619041671933	-6.05516932027047	0.3010300	-20.442318	0.8311122	0.4428862	null	FALSE
GO:0000304	response to singlet oxygen	0.0583981	-6.38131740716114	-3.83241932315931	1.1461280	-17.925687	0.8654510	0.4434063	null	FALSE
GO:0009684	indoleacetic acid biosynthetic process	0.0494138	5.22284082880754	-0.132300868666832	1.0791812	-11.837791	0.7597786	0.4446232	null	FALSE
GO:0097185	cellular response to azide	0.0561520	-5.52032637727647	-4.44350263716181	1.1139434	-14.134822	0.8494849	0.4472027	null	FALSE
GO:0002011	morphogenesis of an epithelial sheet	0.0134765	1.76235578423754	5.71975948929168	0.6020600	-7.657648	0.9052186	0.4499787	null	FALSE
GO:0007492	endoderm development	0.0134765	1.95782206743256	5.69812882270693	0.6020600	-2.509467	0.9235035	0.4499787	null	FALSE
GO:0009745	sucrose mediated signaling	0.0089843	-3.67020299820663	-4.48773661653233	0.4771213	-3.552022	0.7787014	0.4555919	null	FALSE
GO:0071218	cellular response to misfolded protein	0.1033197	-5.34072499653609	-3.18388266558435	1.3802112	-4.517344	0.8249461	0.4588220	null	FALSE
GO:0046482	para-aminobenzoic acid metabolic process	0.0179686	5.76055736144006	2.08177723448389	0.6989700	-1.352411	0.9166516	0.4635037	null	FALSE
GO:0019722	calcium-mediated signaling	0.3279278	-2.3041709807338	-3.67324157519713	1.8692317	-2.188992	0.7569337	0.4636835	null	FALSE
GO:0071236	cellular response to antibiotic	0.8690604	-5.42435683047829	-3.60096250043035	2.2878017	-17.414451	0.8232939	0.4715434	null	FALSE
GO:0036092	phosphatidylinositol-3-phosphate biosynthetic process	0.0359373	5.3503096640789	3.70142394500925	0.9542425	-1.513457	0.8897354	0.4735951	null	FALSE
GO:0080027	response to herbivore	0.0808589	-6.85795561773379	-0.34468497299557	1.2787536	-13.062940	0.8800541	0.4757830	null	FALSE
GO:1902290	positive regulation of defense response to oomycetes	0.0449216	0.462643754463505	-6.97691440336934	1.0413927	-14.872143	0.8393162	0.4818706	null	FALSE
GO:0050821	protein stabilization	0.1437492	5.06688789444162	-2.49100834504779	1.5185139	-3.614097	0.8589013	0.4825149	null	FALSE
GO:0002213	defense response to insect	0.0943354	-6.49718373380868	-0.681236581584559	1.3424227	-8.013172	0.8663284	0.4825590	null	FALSE
GO:0045168	cell-cell signaling involved in cell fate commitment	0.1662100	0.603402145697148	2.88398279640562	1.5797836	-20.327221	0.8348133	0.4928611	null	FALSE
GO:0036309	protein localization to M-band	0.2713265	-3.12889705083525	5.6501401994963	1.7853298	-20.442318	0.9245556	0.4950361	null	FALSE
GO:0036159	inner dynein arm assembly	0.0179686	-5.81103600047936	4.61033367773619	0.6989700	-10.806071	0.9273301	0.4957761	null	FALSE
GO:0032527	protein exit from endoplasmic reticulum	0.0359373	-3.15655807645018	5.83892466113639	0.9542425	-2.917539	0.9335864	0.4998121	null	FALSE
GO:0010150	leaf senescence	0.5076142	1.1064369885545	4.39568567625733	2.0569049	-1.519786	0.8693018	0.5023722	null	FALSE
GO:0009625	response to insect	0.1482413	-6.89820313886138	-0.611840760231855	1.5314789	-27.178894	0.8743942	0.5035878	null	FALSE
GO:0061157	mRNA destabilization	0.2156237	2.10704278049526	-4.9920378624246	1.6901961	-4.106738	0.7720469	0.5065480	null	FALSE
GO:0097237	cellular response to toxic substance	0.8355420	-5.30967843153301	-3.55700508196256	2.2718416	-6.813398	0.8210195	0.5080142	null	FALSE
GO:0052544	defense response by callose deposition in cell wall	0.0718746	-4.77834715576123	0.964930525584747	1.2304489	-18.498763	0.7757015	0.5168809	null	FALSE
GO:0051607	defense response to virus	0.2246081	-6.41738646688853	-0.942862904214826	1.7075702	-5.648221	0.8570249	0.5246042	null	FALSE
GO:0035024	negative regulation of Rho protein signal transduction	0.0044922	1.68964374815201	-7.16161308022256	0.3010300	-8.593483	0.8518081	0.5272151	null	FALSE
GO:0009960	endosperm development	0.1437492	1.46387472479885	4.73213944593284	1.5185139	-2.180950	0.8682090	0.5317308	null	FALSE
GO:2000280	regulation of root development	0.3593729	3.44430487085758	-4.19856454323634	1.9084850	-81.374590	0.8551680	0.5325899	null	FALSE
GO:0009627	systemic acquired resistance	0.2919905	-6.55914783474268	-1.11880906544708	1.8195439	-2.073394	0.8539495	0.5388023	null	FALSE
GO:0071368	cellular response to cytokinin stimulus	0.3593729	-5.25468447096008	-3.9055698419316	1.9084850	-16.910416	0.8196629	0.5432496	null	FALSE
GO:0009626	plant-type hypersensitive response	0.3279278	-5.7596997468796	-1.61167788101626	1.8692317	-23.662726	0.7915493	0.5453319	null	FALSE
GO:2000027	regulation of animal organ morphogenesis	0.2030457	3.8245800628845	-4.31150395434863	1.6627578	-2.298305	0.8593385	0.5454109	null	FALSE
GO:0060465	pharynx development	1.4053739	1.19310532597233	4.5952885900384	2.4927604	-2.509467	0.8577111	0.5514316	null	FALSE
GO:0002239	response to oomycetes	0.4177710	-6.75819569789121	-0.909244647318975	1.9731279	-3.344113	0.8633692	0.5594759	null	FALSE
GO:0006468	protein phosphorylation	5.0671578	6.11169996738932	1.3264913446634	3.0526939	-25.501966	0.9086131	0.5616227	null	FALSE
GO:0048509	regulation of meristem development	0.2964826	3.59927168199087	-4.23522732151566	1.8260748	-47.797196	0.8572095	0.5634440	null	FALSE
GO:1902265	abscisic acid homeostasis	0.0089843	5.95174967518637	-2.12095909334239	0.4771213	-7.025493	0.8783736	0.5661740	null	FALSE
GO:0010930	negative regulation of auxin mediated signaling pathway	0.0134765	1.73371834439542	-6.84642766754893	0.6020600	-8.423030	0.8440504	0.5666125	null	FALSE
GO:0009751	response to salicylic acid	0.7232379	-5.94961474298262	-4.10199143439235	2.2095150	-2.619993	0.8445306	0.5669335	null	FALSE
GO:0009826	unidimensional cell growth	1.0736265	1.5983482748382	5.43871616462989	2.3802112	-4.543084	0.8720855	0.5680023	null	FALSE
GO:0007498	mesoderm development	0.3503886	1.8706232500969	5.30412824861475	1.8976271	-3.610872	0.9031958	0.5707614	null	FALSE
GO:0080003	thalianol metabolic process	0.0089843	5.53951414352383	3.44436746770621	0.4771213	-30.502960	0.8895440	0.5772455	null	FALSE
GO:0071766	Actinobacterium-type cell wall biogenesis	1.0826108	-6.26720929433386	3.95539774577059	2.3838154	-10.192160	0.9170797	0.5779561	null	FALSE
GO:0010438	cellular response to sulfur starvation	0.0314451	-5.1980864634128	-1.80596522052372	0.9030900	-3.856586	0.8397183	0.5817840	null	FALSE
GO:0002230	positive regulation of defense response to virus by host	0.0224608	0.753306418116248	-7.60615557090326	0.7781513	-2.703275	0.8701234	0.5823779	null	FALSE
GO:0071229	cellular response to acid chemical	0.2740218	-5.47816961107031	-4.01854132745134	1.7923917	-12.010943	0.8370700	0.5845806	null	FALSE
GO:1905663	positive regulation of telomerase RNA reverse transcriptase activity	0.0485153	1.60462488214256	-3.58418995801109	1.0413927	-2.276294	0.8610837	0.5862896	null	FALSE
GO:0006812	cation transport	2.2505728	-2.7750543924563	5.99556028164529	2.7007037	-8.598854	0.9510252	0.5885695	null	FALSE
GO:0007165	signal transduction	8.3913571	-1.92774230456162	-3.64359245269155	3.2716093	-81.288547	0.6838945	0.5893442	null	FALSE
GO:0003341	cilium movement	0.0059895	-5.6176888718804	5.40946760876149	0.3010300	-16.666473	0.9525226	0.5985002	null	FALSE
GO:0045747	positive regulation of Notch signaling pathway	0.0392043	0.485349833311705	-6.7210054817548	0.9542425	-2.388180	0.8235029	0.6109914	null	FALSE
GO:0007398	ectoderm development	0.3503886	1.94907877830052	5.19508915393796	1.8976271	-2.388180	0.9031958	0.6126734	null	FALSE
GO:0046345	abscisic acid catabolic process	0.0269530	5.11748930840514	3.20807127719142	0.8450980	-55.983799	0.8550376	0.6194937	null	FALSE
GO:0007422	peripheral nervous system development	3.6745878	1.05476017726606	4.59803633753664	2.9132839	-3.610872	0.8349779	0.6229170	null	FALSE
GO:0006636	unsaturated fatty acid biosynthetic process	0.1033197	5.38503176331955	3.35337236633833	1.3802112	-2.644815	0.8721937	0.6297662	null	FALSE
GO:0045926	negative regulation of growth	0.1751943	3.08763582368947	-5.94545745767821	1.6020600	-15.727160	0.8662875	0.6297772	null	FALSE
GO:1904355	positive regulation of telomere capping	0.0044922	-0.644258173324651	-7.16354988666412	0.3010300	-1.727692	0.8616551	0.6315629	null	FALSE
GO:1905614	negative regulation of developmental vegetative growth	0.0134765	3.89632768566995	-5.61909203838836	0.6020600	-3.116242	0.8602793	0.6315937	null	FALSE
GO:0031640	killing of cells of other organism	1.3072189	-7.49944507216494	0.958580111519025	2.4653829	-2.509567	0.8954840	0.6338299	null	FALSE
GO:0072498	embryonic skeletal joint development	1.8732312	1.09211289905498	4.76156028476425	2.6211763	-2.509467	0.8475362	0.6342863	null	FALSE
GO:0048821	erythrocyte development	0.0179686	1.61443146846909	2.16127586813494	0.6989700	-2.384487	0.7311547	0.6349558	null	FALSE
GO:0042177	negative regulation of protein catabolic process	0.0134765	3.3146017410789	-6.53234164853694	0.6020600	-2.367953	0.8835697	0.6510962	null	FALSE
GO:0031347	regulation of defense response	1.2308522	1.35845440515598	-5.87042695014003	2.4393327	-2.037689	0.8328025	0.6512180	null	FALSE
GO:0009828	plant-type cell wall loosening	0.0314451	-6.51846910196147	3.79448000456468	0.9030900	-1.774122	0.9357965	0.6517822	null	FALSE
GO:0015708	silicic acid import across plasma membrane	0.0331729	-2.51008722866135	6.36130349278321	0.9030900	-3.788987	0.9433715	0.6528448	null	FALSE
GO:0051513	regulation of monopolar cell growth	0.0224608	3.6224377238524	-4.8119371827704	0.7781513	-2.998690	0.8523124	0.6532683	null	FALSE
GO:0042742	defense response to bacterium	1.6216702	-6.28342625991066	-1.3900069181661	2.5587086	-15.100075	0.8261203	0.6545694	null	FALSE
GO:1902042	negative regulation of extrinsic apoptotic signaling pathway via death domain receptors	0.0044922	1.49292107730239	-7.10110503997719	0.3010300	-7.135037	0.8446855	0.6549617	null	FALSE
GO:0070301	cellular response to hydrogen peroxide	0.0449216	-5.72523873256975	-3.58547373641574	1.0413927	-7.747259	0.8274215	0.6554547	null	FALSE
GO:2000026	regulation of multicellular organismal development	1.5677643	3.03833553012998	-4.25368678967266	2.5440680	-35.555401	0.7996712	0.6593517	null	FALSE
GO:0035204	negative regulation of lamellocyte differentiation	0.0359373	3.09386691445437	-5.44086116486623	0.9542425	-2.388180	0.8083724	0.6596159	null	FALSE
GO:0009914	hormone transport	0.4447240	1.58570448155532	-0.705489929394413	2.0000000	-8.520136	0.8055263	0.6604623	null	FALSE
GO:1900745	positive regulation of p38MAPK cascade	0.0179686	0.343144044131166	-6.98517986423933	0.6989700	-1.752952	0.8279057	0.6611691	null	FALSE
GO:0043086	negative regulation of catalytic activity	1.1410089	2.45058446808892	-2.82338390367657	2.4065402	-1.980503	0.8650703	0.6653174	null	FALSE
GO:0009866	induced systemic resistance,ethylene mediated signaling pathway	0.0179686	-2.87049263452594	-4.07849043863229	0.6989700	-5.551154	0.6576328	0.6707259	null	FALSE
GO:0045338	farnesyl diphosphate metabolic process	0.0898432	5.22038330922835	4.05727695341796	1.3222193	-40.331178	0.8804222	0.6735153	null	FALSE
GO:0009852	auxin catabolic process	0.0089843	5.76655906699693	-1.53678570323977	0.4771213	-11.473243	0.8365254	0.6856031	null	FALSE
GO:1900449	regulation of glutamate receptor signaling pathway	0.1735903	1.10421870483562	-6.36971764237398	1.5682017	-7.135037	0.8356625	0.6858401	null	FALSE
GO:0048265	response to pain	11.9626252	-3.75451777234007	-0.383728473519626	3.4255342	-2.509467	0.7337153	0.6889007	null	FALSE
GO:0010030	positive regulation of seed germination	0.0898432	2.46428492319379	-4.92617315374876	1.3222193	-6.951280	0.8070507	0.6895163	null	FALSE
GO:0032870	cellular response to hormone stimulus	4.2316158	-5.47156259630583	-3.27508198721261	2.9745117	-7.407748	0.7786998	0.6896194	null	FALSE

[1] “missing_arabidopsis_vs_all_GO.txt”

TermID	Name	Frequency	PlotX	PlotY	LogSize	Value	Uniqueness	Dispensability	Representative	Eliminated
GO:0009819	drought recovery	0.0494138	-6.73520180014317	-0.299513837406468	1.0791812	-31.057832	0.9203897	0.0000000	null	FALSE
GO:0009877	nodulation	0.0988275	3.25868954254743	6.10486544555577	1.3617278	-11.377572	0.8388537	0.0000000	null	FALSE
GO:0010233	phloem transport	0.0943354	5.23907434064942	2.54307966812148	1.3424227	-10.718896	0.7607701	0.0000000	null	FALSE
GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	0.3773415	-0.736911222893041	-4.41568390127953	1.9294189	-23.559069	0.9133378	0.0000000	null	FALSE
GO:0045926	negative regulation of growth	0.1751943	-3.18120810016662	5.59783502308761	1.6020600	-75.159828	0.8952082	0.0000000	null	FALSE
GO:0031589	cell-substrate adhesion	0.0044922	-4.8818410229502	-6.11654668058753	0.3010300	-2.835492	0.9749859	0.0213516	null	FALSE
GO:0000226	microtubule cytoskeleton organization	0.7232379	5.44013211073178	-2.92436790363277	2.2095150	-21.958043	0.8685834	0.0316757	null	FALSE
GO:0045730	respiratory burst	0.0224608	-5.4363871094901	-5.65400577894965	0.7781513	-1.825271	0.9773775	0.0600739	null	FALSE
GO:1904526	regulation of microtubule binding	0.0044922	-0.853974071061106	0.0597311974660317	0.3010300	-61.579741	0.9393830	0.1037129	null	FALSE
GO:0009311	oligosaccharide metabolic process	0.4267553	-3.9247242848914	-5.9493126729236	1.9822712	-7.895729	0.9511658	0.1045125	null	FALSE
GO:0097503	sialylation	0.0134765	-2.27715285935103	-4.33367894919923	0.6020600	-3.416393	0.9571898	0.1181081	null	FALSE
GO:0031542	positive regulation of anthocyanin biosynthetic process	0.0179686	-6.05597060807545	4.71401664318393	0.6989700	-3.627182	0.9093678	0.1293947	null	FALSE
GO:0000966	RNA 5’-end processing	0.0808589	2.23669608722183	-5.70595563873488	1.2787536	-16.663352	0.9066769	0.1347712	null	FALSE
GO:2000023	regulation of lateral root development	0.1257805	-1.69158273289898	5.94023402987568	1.4623980	-6.604582	0.8705414	0.1487254	null	FALSE
GO:0009617	response to bacterium	2.1113158	-5.95324631699686	-1.96141261885351	2.6730209	-23.613172	0.9003626	0.1641436	null	FALSE
GO:0033387	putrescine biosynthetic process from ornithine	0.0123534	0.339690410171614	-6.49434518117053	0.4771213	-13.401532	0.8963321	0.1969581	null	FALSE
GO:0007166	cell surface receptor signaling pathway	0.5794888	-4.36924823194143	2.02849990260642	2.1139434	-5.354689	0.8273169	0.2090014	null	FALSE
GO:0009410	response to xenobiotic stimulus	0.0359373	-7.30466020783152	0.104821790042726	0.9542425	-11.386409	0.9412302	0.2284321	null	FALSE
GO:0009962	regulation of flavonoid biosynthetic process	0.1257805	-3.17649817441696	6.54010139644069	1.4623980	-2.600440	0.9181712	0.2324944	null	FALSE
GO:0080051	cutin transport	0.0134765	6.87465469110329	1.00037394431516	0.6020600	-1.773667	0.9591081	0.2347702	null	FALSE
GO:0007492	endoderm development	0.0134765	2.49693193367278	6.57392841613605	0.6020600	-2.758626	0.8830023	0.2359966	null	FALSE
GO:1901949	5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate biosynthetic process	0.1848275	0.00335884780997925	-6.66350824456364	1.6232493	-14.605293	0.8566769	0.2545451	null	FALSE
GO:0009992	cellular water homeostasis	0.0089843	2.60146967520861	-1.12187740064115	0.4771213	-2.289354	0.8684246	0.2566157	null	FALSE
GO:1902025	nitrate import	0.0808589	6.83798549918326	0.190872167856055	1.2787536	-5.828260	0.9498478	0.2646327	null	FALSE
GO:0010305	leaf vascular tissue pattern formation	0.1347648	4.26763609693494	5.02395957694805	1.4913617	-7.541784	0.8290603	0.2761625	null	FALSE
GO:0006898	receptor-mediated endocytosis	0.1976551	6.34901591632499	0.721929168966978	1.6532125	-6.047190	0.9291035	0.2825621	null	FALSE
GO:0006952	defense response	7.2503481	-5.69228162775997	-0.771220951085929	3.2081725	-96.210331	0.9192426	0.2904696	null	FALSE
GO:0098657	import into cell	0.1392570	6.6937028659393	0.651242958220632	1.5051500	-3.726525	0.9537816	0.2911576	null	FALSE
GO:0044550	secondary metabolite biosynthetic process	0.6244104	-2.33070356872885	-6.98108322622106	2.1461280	-6.590408	0.9236327	0.2938489	null	FALSE
GO:0009733	response to auxin	1.8597547	-6.30742703132314	-0.0506516374791776	2.6180481	-4.547141	0.9087672	0.3061641	null	FALSE
GO:0048312	intracellular distribution of mitochondria	0.0044922	5.45367864512575	-1.12336789659259	0.3010300	-2.755929	0.8956797	0.3162058	null	FALSE
GO:0010114	response to red light	0.2785140	-7.1372687982476	-1.20872691133684	1.7993405	-2.973863	0.9442679	0.3255957	null	FALSE
GO:0032504	multicellular organism reproduction	0.8040969	4.82006783822374	4.2298343581342	2.2552725	-5.880605	0.8375175	0.3270246	null	FALSE
GO:0016567	protein ubiquitination	3.7105251	-0.210363665556428	-4.84764657220209	2.9175055	-8.233559	0.9012866	0.3270943	null	FALSE
GO:0007339	binding of sperm to zona pellucida	0.0089843	1.35055500543804	0.992229916953427	0.4771213	-2.995739	0.9668297	0.3317891	null	FALSE
GO:1902042	negative regulation of extrinsic apoptotic signaling pathway via death domain receptors	0.0044922	-4.26623773188538	6.09671746411802	0.3010300	-7.626170	0.8872515	0.3379466	null	FALSE
GO:0015939	pantothenate metabolic process	0.0179686	1.64163128523409	-6.56132275137541	0.6989700	-6.369773	0.9170995	0.3411185	null	FALSE
GO:0071447	cellular response to hydroperoxide	0.1529288	-5.71759066964368	-0.00680389829562064	1.5440680	-7.626170	0.8854373	0.3536993	null	FALSE
GO:0071766	Actinobacterium-type cell wall biogenesis	1.0826108	4.94052709748391	-3.29237706402159	2.3838154	-10.738963	0.8774736	0.3567066	null	FALSE
GO:0036498	IRE1-mediated unfolded protein response	0.0134765	-5.30358675293545	1.06767631326513	0.6020600	-1.997416	0.8469345	0.3576515	null	FALSE
GO:0035600	tRNA methylthiolation	0.0089843	1.80308598352518	-5.31480243691548	0.4771213	-3.993292	0.9076597	0.3671116	null	FALSE
GO:0002182	cytoplasmic translational elongation	0.0224608	0.190827162942527	-5.99639015923231	0.7781513	-1.428299	0.8993510	0.3680407	null	FALSE
GO:1903224	regulation of endodermal cell differentiation	0.0044922	-1.43032273548259	6.70870092099723	0.3010300	-4.810111	0.9089880	0.3865517	null	FALSE
GO:0010359	regulation of anion channel activity	0.0494138	-2.49036555791333	3.15777408298223	1.0791812	-9.197787	0.8883993	0.3874463	null	FALSE
GO:0045184	establishment of protein localization	3.7823997	6.36541303617652	0.188224825051507	2.9258276	-4.787121	0.9339116	0.3880049	null	FALSE
GO:0006335	DNA replication-dependent chromatin assembly	0.0179686	4.8287731202199	-3.00577426082243	0.6989700	-4.150067	0.9062387	0.3882255	null	FALSE
GO:0061820	telomeric D-loop disassembly	0.0044922	3.21119354795028	-4.0815217982391	0.3010300	-1.596827	0.8737349	0.3892522	null	FALSE
GO:0002011	morphogenesis of an epithelial sheet	0.0134765	2.85422518334499	6.31431747777568	0.6020600	-2.995739	0.8538112	0.3953158	null	FALSE
GO:0007369	gastrulation	0.0134765	3.98969263043159	5.57713498313739	0.6020600	-5.952804	0.8197372	0.3953158	null	FALSE
GO:0010737	protein kinase A signaling	0.2467993	-4.59154077306012	2.04750324541419	1.7403627	-2.293020	0.8386179	0.4069935	null	FALSE
GO:0016045	detection of bacterium	0.0134765	-6.02745697050355	-3.00604703892303	0.6020600	-12.125293	0.9186815	0.4090250	null	FALSE
GO:0007178	transmembrane receptor protein serine/threonine kinase signaling pathway	0.2650375	-4.26789632596511	1.81418705725301	1.7781513	-3.010935	0.8316591	0.4096115	null	FALSE
GO:0090615	mitochondrial mRNA processing	0.0539059	2.42555080794693	-5.82667651654239	1.1139434	-8.152980	0.8952376	0.4120236	null	FALSE
GO:0048439	flower morphogenesis	0.0269530	3.53205378858097	4.71538951426077	0.8450980	-4.558133	0.8138287	0.4134163	null	FALSE
GO:0035864	response to potassium ion	0.0269530	-7.3138918408594	0.43751472606112	0.8450980	-3.561205	0.9403236	0.4217509	null	FALSE
GO:0009745	sucrose mediated signaling	0.0089843	-5.83525681382827	1.43254989622049	0.4771213	-4.100581	0.8526711	0.4278823	null	FALSE
GO:0006486	protein glycosylation	0.7322223	-0.486018824823945	-5.81899346849693	2.2148438	-2.967523	0.8738888	0.4293059	null	FALSE
GO:0044364	disruption of cells of other organism	0.0269530	-5.96931267118691	-4.05583023892602	0.8450980	-2.755929	0.9672614	0.4301109	null	FALSE
GO:0046777	protein autophosphorylation	0.7636674	0.0930465821650909	-4.95372107354279	2.2329961	-7.305555	0.9033473	0.4315157	null	FALSE
GO:0046482	para-aminobenzoic acid metabolic process	0.0179686	1.4224526792971	-6.52614011715898	0.6989700	-1.986689	0.9087871	0.4395354	null	FALSE
GO:0061157	mRNA destabilization	0.2156237	-3.838968756779	4.63314513601181	1.6901961	-4.943818	0.8525187	0.4427212	null	FALSE
GO:0045056	transcytosis	0.0044922	5.53980130671705	2.44729776108028	0.3010300	-1.617946	0.8433839	0.4534531	null	FALSE
GO:0071921	cohesin loading	0.0044922	5.43230354968301	-1.35205684237437	0.3010300	-1.496974	0.8890119	0.4563019	null	FALSE
GO:0009608	response to symbiont	0.0539059	-6.00212818859042	-2.65790818516848	1.1139434	-7.017275	0.9265259	0.4588364	null	FALSE
GO:0098530	positive regulation of strand invasion	0.0152733	-5.69615778887885	4.64351588639654	0.6020600	-1.596827	0.9046446	0.4704375	null	FALSE
GO:0010150	leaf senescence	0.5076142	3.87382125799594	4.9005616985243	2.0569049	-4.016755	0.8004546	0.4731624	null	FALSE
GO:0032526	response to retinoic acid	0.4215893	-6.54754925392882	0.144698843579772	1.9731279	-1.471984	0.9156223	0.4739620	null	FALSE
GO:0015969	guanosine tetraphosphate metabolic process	0.0179686	1.03424994261224	-6.11865512871399	0.6989700	-2.627528	0.8980691	0.4786646	null	FALSE
GO:0019878	lysine biosynthetic process via aminoadipic acid	0.0179686	-0.758516163383181	-6.70384195626195	0.6989700	-4.260093	0.9068749	0.4806061	null	FALSE
GO:0031065	positive regulation of histone deacetylation	0.0359373	-5.34009801355943	4.62840014583884	0.9542425	-1.496974	0.8995954	0.4820669	null	FALSE
GO:0060465	pharynx development	1.4053739	3.65333456483882	5.03932274177071	2.4927604	-2.755929	0.7850590	0.4836985	null	FALSE
GO:0072699	protein localization to cortical microtubule cytoskeleton	0.0134765	6.18577635944318	-0.126734788182671	0.6020600	-4.555906	0.9316471	0.4974365	null	FALSE
GO:1900449	regulation of glutamate receptor signaling pathway	0.1735903	-4.21071733670846	5.42879988520036	1.5682017	-7.626170	0.8748601	0.5089636	null	FALSE
GO:0048211	Golgi vesicle docking	0.0089843	5.98477635319456	0.337710887947776	0.4771213	-1.617946	0.9310126	0.5090434	null	FALSE
GO:0006627	protein processing involved in protein targeting to mitochondrion	0.0179686	3.98128232810513	-2.34117598297586	0.6989700	-1.720248	0.8325597	0.5141106	null	FALSE
GO:0090558	plant epidermis development	1.1679619	2.74052530506529	6.07528580465219	2.4166405	-2.738830	0.8353260	0.5184871	null	FALSE
GO:0009251	glucan catabolic process	0.2470689	-3.08790656530141	-5.48032904924735	1.7481880	-2.365504	0.9305552	0.5219667	null	FALSE
GO:2000280	regulation of root development	0.3593729	-1.96032041927825	5.16941649207734	1.9084850	-5.252086	0.8889514	0.5241877	null	FALSE
GO:0042761	very long-chain fatty acid biosynthetic process	0.0988275	-0.780562454419334	-7.13728160880023	1.3617278	-2.053810	0.8892492	0.5277113	null	FALSE
GO:0051967	negative regulation of synaptic transmission,glutamatergic	0.0044922	-4.26219688304927	6.25116792696201	0.3010300	-4.712564	0.8955352	0.5278281	null	FALSE
GO:0035024	negative regulation of Rho protein signal transduction	0.0044922	-4.43988137679546	6.08829758515459	0.3010300	-3.841743	0.8837901	0.5316060	null	FALSE
GO:0009626	plant-type hypersensitive response	0.3279278	-5.29283877002498	-1.27932580926743	1.8692317	-20.800214	0.8545525	0.5453319	null	FALSE
GO:0009826	unidimensional cell growth	1.0736265	3.09486238721809	5.83586049588078	2.3802112	-3.368105	0.7929174	0.5464143	null	FALSE
GO:0043588	skin development	1.7580260	3.42501173263489	5.08079023831395	3.2564772	-2.755929	0.7338234	0.5560406	null	FALSE
GO:0044403	biological process involved in symbiotic interaction	0.4312475	-6.06433743496957	-3.88379814162983	1.9867717	-9.395802	0.9598398	0.5582824	null	FALSE
GO:0009742	brassinosteroid mediated signaling pathway	0.3638651	-5.08449181387461	1.60704701683384	1.9138139	-6.885721	0.8072039	0.5587782	null	FALSE
GO:0010083	regulation of vegetative meristem growth	0.0329425	0.820336844860263	5.56695983141155	0.9030900	-25.517715	0.7518998	0.5625290	null	FALSE
GO:0048509	regulation of meristem development	0.2964826	-1.91172025147156	5.37268010283074	1.8260748	-5.238104	0.8905056	0.5634440	null	FALSE
GO:0052544	defense response by callose deposition in cell wall	0.0718746	1.81728730678999	-0.61370908682615	1.2304489	-6.905833	0.8005612	0.5779561	null	FALSE
GO:0008610	lipid biosynthetic process	2.7716634	-1.89187052331612	-6.69817585861151	2.7909885	-1.447198	0.9035673	0.5789751	null	FALSE
GO:0009218	pyrimidine ribonucleotide metabolic process	0.1257805	0.919054077377444	-5.92684961797623	1.4623980	-1.426628	0.8845295	0.5850997	null	FALSE
GO:0014013	regulation of gliogenesis	0.0044922	0.901985534113264	5.36051639337516	0.3010300	-2.217819	0.7400230	0.5911068	null	FALSE
GO:0007275	multicellular organism development	10.3544315	3.49759318533192	5.25319340419541	3.3628593	-4.193035	0.7594223	0.5926294	null	FALSE
GO:1904851	positive regulation of establishment of protein localization to telomere	0.0404295	-5.0163387573282	4.38850467281893	1.0000000	-1.379635	0.8802193	0.5976487	null	FALSE
GO:0001701	in utero embryonic development	1.7833880	3.7584496595589	5.25735764454742	2.6211763	-4.688566	0.7761709	0.6033090	null	FALSE
GO:0009734	auxin-activated signaling pathway	0.9972598	-4.90401310488682	1.79058467032072	2.3483049	-5.072313	0.7982169	0.6060261	null	FALSE
GO:0003341	cilium movement	0.0059895	6.52440890326487	-4.07368049925157	0.3010300	-17.515455	0.9470345	0.6208058	null	FALSE
GO:0060294	cilium movement involved in cell motility	0.0059895	6.72426511417472	-1.14618867961976	0.4771213	-19.092525	0.9036820	0.6208058	null	FALSE
GO:0010470	regulation of gastrulation	0.1539688	-1.76289983414408	5.75676841199434	1.5440680	-4.810111	0.8666181	0.6218939	null	FALSE
GO:0101030	tRNA-guanine transglycosylation	0.0333169	1.54245294367053	-5.2198110636074	0.9030900	-2.835031	0.9002309	0.6260287	null	FALSE
GO:0006336	DNA replication-independent chromatin assembly	0.0404295	4.81657892782626	-2.87477062565359	1.0000000	-3.787082	0.9015843	0.6310454	null	FALSE
GO:0031640	killing of cells of other organism	1.3072189	-6.19493272360761	-3.83728560211903	2.4653829	-2.756107	0.9313587	0.6338299	null	FALSE
GO:0007165	signal transduction	8.3913571	-4.41104988946846	2.23906612330691	3.2716093	-119.239761	0.7796595	0.6344952	null	FALSE
GO:0048821	erythrocyte development	0.0179686	2.22152646321132	4.30233250456855	0.6989700	-2.676151	0.7088042	0.6384362	null	FALSE
GO:0051513	regulation of monopolar cell growth	0.0224608	-1.92523755909152	6.10195779055095	0.7781513	-3.381197	0.8826127	0.6393644	null	FALSE
GO:0007349	cellularization	0.0404295	3.65784244493381	5.61755962529707	1.0000000	-1.998218	0.8090526	0.6411372	null	FALSE
GO:0006468	protein phosphorylation	5.0671578	0.000161538558564082	-5.23481091894549	3.0526939	-44.190986	0.8862054	0.6414721	null	FALSE
GO:1900745	positive regulation of p38MAPK cascade	0.0179686	-4.9948358036893	5.31645477965658	0.6989700	-1.997416	0.8630862	0.6447047	null	FALSE
GO:0044806	G-quadruplex DNA unwinding	0.1482413	4.66031802183987	-2.79193337304845	1.5314789	-1.596827	0.9058033	0.6448448	null	FALSE
GO:0060325	face morphogenesis	0.5812857	3.13891786856089	5.94594592795398	2.1139434	-1.496974	0.8176179	0.6464135	null	FALSE
GO:0009828	plant-type cell wall loosening	0.0314451	5.03741528723213	-3.71532560073745	0.9030900	-2.793297	0.9115500	0.6517822	null	FALSE
GO:0015708	silicic acid import across plasma membrane	0.0331729	6.97618237940951	0.324365846811212	0.9030900	-4.085583	0.9369619	0.6528448	null	FALSE
GO:0042742	defense response to bacterium	1.6216702	-5.78380165533684	-1.81587403042227	2.5587086	-5.879025	0.8908942	0.6545694	null	FALSE
GO:0060548	negative regulation of cell death	0.1662100	-3.62078046303753	5.01984544443063	1.5797836	-1.766217	0.8984414	0.6583366	null	FALSE
GO:0090708	specification of plant organ axis polarity	0.0404295	4.04922077347208	5.2257188019017	1.0000000	-5.847839	0.8086101	0.6587402	null	FALSE
GO:0097306	cellular response to alcohol	1.1275325	-5.94523149955123	0.137586085666841	2.4014005	-2.674237	0.8715329	0.6692924	null	FALSE
GO:0036159	inner dynein arm assembly	0.0179686	5.58906355870449	-3.07209795376791	0.6989700	-13.046176	0.8773282	0.6711268	null	FALSE
GO:0009867	jasmonic acid mediated signaling pathway	0.3998023	-5.14422794109234	1.68945528755759	1.9542425	-2.146426	0.8057820	0.6755918	null	FALSE
GO:0009690	cytokinin metabolic process	0.1751943	-0.337286042593598	-2.21878965708728	1.6020600	-8.510983	0.8317378	0.6792812	null	FALSE
GO:0030240	skeletal muscle thin filament assembly	0.0592965	3.49623669883265	2.79246599424586	1.1461280	-6.369436	0.7314163	0.6944233	null	FALSE

[1] “missing_posi_vs_all_GO.txt”

TermID	Name	Frequency	PlotX	PlotY	LogSize	Value	Uniqueness	Dispensability	Representative	Eliminated
GO:0009819	drought recovery	0.0494138	-0.828198076778107	-6.41676817201854	1.0791812	-39.762484	0.9095380	0.0000000	null	FALSE
GO:0010375	stomatal complex patterning	0.0494138	-3.19838189240803	6.14029032119316	1.0791812	-33.754478	0.9266859	0.0000000	null	FALSE
GO:0040011	locomotion	0.1841786	-4.91503269057047	-6.78913623951103	1.6232493	-2.110800	1.0000000	0.0000000	null	FALSE
GO:0045926	negative regulation of growth	0.1751943	-5.9544763317336	1.82442476352685	1.6020600	-56.870827	0.8529387	0.0000000	null	FALSE
GO:0090305	nucleic acid phosphodiester bond hydrolysis	1.6171780	5.24428965894673	-1.29542040760057	2.5575072	-202.077576	0.8940943	0.0000000	null	FALSE
GO:0003341	cilium movement	0.0059895	-5.32322823439561	-5.88912106098667	0.3010300	-11.828706	0.9577144	0.0240391	null	FALSE
GO:0007023	post-chaperonin tubulin folding pathway	0.0179686	-5.9541618757312	-5.97729434539952	0.6989700	-2.977004	0.9808062	0.0261106	null	FALSE
GO:0036371	protein localization to T-tubule	0.0314451	2.8548128234759	5.99198103385138	0.9030900	-15.023967	0.9196698	0.0273094	null	FALSE
GO:0051211	anisotropic cell growth	0.0359373	3.13620473626661	-7.10569875966247	0.9542425	-1.813416	0.9767397	0.0276119	null	FALSE
GO:0034724	DNA replication-independent chromatin organization	0.0494138	4.53788866430661	3.4229914571541	1.0791812	-12.343109	0.9279718	0.0283611	null	FALSE
GO:0009780	photosynthetic NADP+ reduction	0.0044922	-5.10530645305247	-6.51382929295297	0.3010300	-8.261077	0.9526537	0.0782721	null	FALSE
GO:0051554	flavonol metabolic process	0.0853511	4.03013441618182	-6.05461400367857	1.3010300	-27.259447	0.9328267	0.0907318	null	FALSE
GO:1904526	regulation of microtubule binding	0.0044922	0.277638606792574	-0.825257086240716	0.3010300	-40.641336	0.9089796	0.1037129	null	FALSE
GO:0051762	sesquiterpene biosynthetic process	0.1123040	5.06600856122262	-4.06046386857709	1.4149733	-100.297555	0.8771729	0.1056641	null	FALSE
GO:0010881	regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion	0.0089843	-2.40831625122287	-2.38187191610016	0.4771213	-28.972157	0.7498298	0.1236690	null	FALSE
GO:0050434	positive regulation of viral transcription	0.0089843	-7.02205677239706	-3.1147283019699	0.4771213	-11.444585	0.8866056	0.1236690	null	FALSE
GO:0015979	photosynthesis	1.1230403	3.92811210806438	-6.52781936774272	2.3996737	-1.786708	0.9443915	0.1284458	null	FALSE
GO:0009625	response to insect	0.1482413	0.776821538361252	-6.78393392140453	1.5314789	-15.643489	0.9236552	0.1332801	null	FALSE
GO:0009962	regulation of flavonoid biosynthetic process	0.1257805	-3.74094911320233	0.565033892592914	1.4623980	-14.549538	0.8912145	0.1487254	null	FALSE
GO:2000280	regulation of root development	0.3593729	-4.84026520482353	-1.37642997043552	1.9084850	-53.716023	0.8653202	0.1617632	null	FALSE
GO:0080155	regulation of double fertilization forming a zygote and endosperm	0.2335924	-5.20262155527868	-2.8065406423899	1.7242759	-7.626381	0.8896629	0.1657447	null	FALSE
GO:0007346	regulation of mitotic cell cycle	0.3818337	-4.36245950382443	-1.01355519690647	1.9344985	-10.155337	0.8834858	0.1730192	null	FALSE
GO:0035902	response to immobilization stress	0.0089843	1.73853538161879	-5.69638311315067	0.4771213	-10.850181	0.9516355	0.1749598	null	FALSE
GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	0.3773415	6.81395723144948	-0.69567799835247	1.9294189	-62.059796	0.9103382	0.1763754	null	FALSE
GO:0043457	regulation of cellular respiration	0.0044922	-6.13051032524918	-3.77174226524315	0.3010300	-3.301968	0.9080881	0.1788328	null	FALSE
GO:0036290	protein trans-autophosphorylation	0.0044922	7.13667157646868	0.2730563280352	0.3010300	-1.365237	0.9345889	0.1861765	null	FALSE
GO:0080164	regulation of nitric oxide metabolic process	0.0089843	-2.85517309147309	1.6854235300513	0.4771213	-3.416873	0.9085331	0.1865822	null	FALSE
GO:0080184	response to phenylpropanoid	0.0044922	-2.2953693350641	-7.04283252667454	0.3010300	-8.913764	0.9354852	0.2014785	null	FALSE
GO:0006359	regulation of transcription by RNA polymerase III	0.0044922	-6.25425198258439	-3.44638873712508	0.3010300	-5.285495	0.9059802	0.2131819	null	FALSE
GO:0019218	regulation of steroid metabolic process	0.0269530	-3.52013034956866	1.51814092488103	0.8450980	-4.076369	0.8954141	0.2210355	null	FALSE
GO:2000762	regulation of phenylpropanoid metabolic process	0.1212884	-4.33718989487892	-0.124619188997735	1.4471580	-9.682429	0.8873431	0.2228407	null	FALSE
GO:0010310	regulation of hydrogen peroxide metabolic process	0.0539059	-4.13315247542504	0.842706831235924	1.1139434	-5.432629	0.8906538	0.2239731	null	FALSE
GO:0090143	nucleoid organization	0.0179686	5.66160003210041	3.60484340946779	0.6989700	-4.046449	0.9409583	0.2251592	null	FALSE
GO:0009410	response to xenobiotic stimulus	0.0359373	-1.88528310624671	-6.98236688428016	0.9542425	-2.970613	0.9367607	0.2284321	null	FALSE
GO:0030587	sorocarp development	0.0404295	-4.04778524847892	6.42392627283253	1.0000000	-2.979628	0.9450099	0.2421996	null	FALSE
GO:0048462	carpel formation	0.0179686	-2.48784439587522	6.43665351218677	0.6989700	-22.697279	0.8994079	0.2504087	null	FALSE
GO:0030198	extracellular matrix organization	0.0988275	4.95167891751868	3.66674379049179	1.3617278	-6.950692	0.9287994	0.2515722	null	FALSE
GO:0009969	xyloglucan biosynthetic process	0.0808589	5.15402108697957	1.2564993572874	1.2787536	-24.960744	0.8455730	0.2530424	null	FALSE
GO:0010233	phloem transport	0.0943354	0.258217692551418	6.21185823433386	1.3424227	-23.811719	0.8845906	0.2564512	null	FALSE
GO:1902025	nitrate import	0.0808589	1.94286416219559	6.57689120762276	1.2787536	-22.839119	0.9261728	0.2646327	null	FALSE
GO:0042176	regulation of protein catabolic process	0.4267553	-4.29743127330168	0.183458214391129	1.9822712	-12.811444	0.8661027	0.2713463	null	FALSE
GO:0012502	induction of programmed cell death	0.0044922	-7.12227898921862	-2.57881252056497	0.3010300	-9.431784	0.8779370	0.2746607	null	FALSE
GO:0009268	response to pH	0.0359373	-3.16684869243387	-6.61698470578917	0.9542425	-4.887249	0.9506672	0.2827029	null	FALSE
GO:0045168	cell-cell signaling involved in cell fate commitment	0.1662100	-3.32490078846678	5.54591976131779	1.5797836	-22.581085	0.8800424	0.2860549	null	FALSE
GO:0033206	meiotic cytokinesis	0.0404295	-1.03922221826231	7.23877993440425	1.0000000	-12.323855	0.9455294	0.2861295	null	FALSE
GO:0071236	cellular response to antibiotic	0.8690604	-1.19970819456132	-5.85810901109196	2.2878017	-15.558175	0.8808219	0.2873162	null	FALSE
GO:0019756	cyanogenic glycoside biosynthetic process	0.1069562	6.1172026122688	-1.86826381309062	1.4313638	-25.518707	0.8630848	0.2895405	null	FALSE
GO:0042908	xenobiotic transport	0.3369121	2.10992020507353	6.05414562788897	1.8808136	-5.906055	0.9404357	0.2944657	null	FALSE
GO:0050826	response to freezing	0.1167962	0.664919660725285	-5.19200657181003	1.4313638	-7.571291	0.9359131	0.3058984	null	FALSE
GO:0043153	entrainment of circadian clock by photoperiod	0.0224608	-1.14188319659052	-3.99282941433007	0.7781513	-11.106471	0.8578360	0.3069126	null	FALSE
GO:0018008	N-terminal peptidyl-glycine N-myristoylation	0.0089843	6.77588708130352	-1.30705544704271	0.4771213	-6.862429	0.9092171	0.3108274	null	FALSE
GO:0033387	putrescine biosynthetic process from ornithine	0.0123534	6.00919155621222	-2.48545790978601	0.4771213	-9.050561	0.9016999	0.3196216	null	FALSE
GO:0090559	regulation of membrane permeability	0.0089843	-4.68560572324178	-4.71468930834726	0.4771213	-3.415678	0.8962437	0.3244429	null	FALSE
GO:0016567	protein ubiquitination	3.7105251	6.46384234353309	-0.291564199392361	2.9175055	-19.832729	0.9044925	0.3270943	null	FALSE
GO:0071347	cellular response to interleukin-1	0.0044922	-2.18520597138999	-6.15513868309466	0.3010300	-9.101635	0.9131985	0.3281054	null	FALSE
GO:0010221	negative regulation of vernalization response	0.0044922	-7.14136731151118	1.68763952610234	0.3010300	-8.832352	0.8584035	0.3379466	null	FALSE
GO:2000083	negative regulation of L-ascorbic acid biosynthetic process	0.0044922	-6.09753590079935	2.16971579008454	0.3010300	-14.028558	0.8612217	0.3379466	null	FALSE
GO:0016045	detection of bacterium	0.0134765	1.36200994570303	-6.97400356244588	0.6020600	-3.008507	0.9346272	0.3385947	null	FALSE
GO:0048211	Golgi vesicle docking	0.0089843	3.03754288910281	6.05226247942087	0.4771213	-5.955050	0.9225179	0.3424968	null	FALSE
GO:0010344	seed oilbody biogenesis	0.0404295	-0.519811383791661	5.16351204840421	1.0000000	-16.161163	0.8581097	0.3457972	null	FALSE
GO:0010275	NAD(P)H dehydrogenase complex assembly	0.0494138	5.21162236092769	3.15232896496848	1.0791812	-18.708367	0.9193149	0.3465167	null	FALSE
GO:0070846	Hsp90 deacetylation	0.1033197	6.80461864356664	0.44822515600396	1.3802112	-3.744559	0.9252017	0.3466347	null	FALSE
GO:2000098	negative regulation of smooth muscle cell-matrix adhesion	0.0089843	-6.6067074936673	2.52615089361334	0.4771213	-2.526602	0.8710965	0.3529006	null	FALSE
GO:0015853	adenine transport	0.0179686	2.40699109789327	6.77713473329435	0.6989700	-4.452453	0.9429150	0.3534636	null	FALSE
GO:0001172	transcription,RNA-templated	0.0359373	5.36376896090653	-1.84532471820139	0.9542425	-5.524972	0.8883773	0.3541850	null	FALSE
GO:0002011	morphogenesis of an epithelial sheet	0.0134765	-3.73993180101815	6.56482323163278	0.6020600	-3.289730	0.9405610	0.3568861	null	FALSE
GO:0048544	recognition of pollen	0.5570280	-2.01929117526729	5.22208134479092	2.0969100	-5.518977	0.8810407	0.3616901	null	FALSE
GO:0090480	purine nucleotide-sugar transmembrane transport	0.0269530	2.11639138004486	6.7746931759793	0.8450980	-1.440548	0.9239980	0.3628069	null	FALSE
GO:0006778	porphyrin-containing compound metabolic process	0.3458964	5.30375410555378	-0.965321151515854	1.8920946	-6.174433	0.9112531	0.3675002	null	FALSE
GO:0071466	cellular response to xenobiotic stimulus	0.0224608	-1.87519636942723	-5.96219981889936	0.7781513	-6.082287	0.9096813	0.3682726	null	FALSE
GO:1902457	negative regulation of stomatal opening	0.0179686	-6.60780312218519	2.14447005807538	0.6989700	-16.296225	0.8658271	0.3692394	null	FALSE
GO:0019915	lipid storage	0.1302727	2.74365499212738	6.41222422965363	1.4771213	-1.587403	0.9393397	0.3729983	null	FALSE
GO:0009653	anatomical structure morphogenesis	3.8587665	-3.41635217066221	6.52399504296625	2.9344985	-11.417696	0.9264078	0.3743725	null	FALSE
GO:0070848	response to growth factor	0.9496038	-1.06261200664236	-6.58475971520263	2.3263359	-3.742023	0.9101486	0.3776394	null	FALSE
GO:0000966	RNA 5’-end processing	0.0808589	4.64884378523774	-1.1932808400369	1.2787536	-40.450386	0.9104844	0.3797277	null	FALSE
GO:0045056	transcytosis	0.0044922	0.184082561087358	6.40531320573089	0.3010300	-5.955050	0.8947429	0.3809345	null	FALSE
GO:0080027	response to herbivore	0.0808589	0.956049950492535	-6.83367857588173	1.2787536	-2.945089	0.9270232	0.3830913	null	FALSE
GO:0002238	response to molecule of fungal origin	0.0853511	-0.411924335757702	-6.76579614329841	1.3010300	-6.476875	0.9023050	0.3846165	null	FALSE
GO:0002213	defense response to insect	0.0943354	0.872582760865922	-6.20113098621824	1.3424227	-7.205055	0.9173149	0.3874721	null	FALSE
GO:0045007	depurination	0.1069134	2.34017159827213	-3.35593394197023	1.3802112	-5.052084	0.8374342	0.3894002	null	FALSE
GO:0080156	mitochondrial mRNA modification	0.1347648	5.70672834580865	-0.714206107288784	1.4913617	-30.657427	0.8984874	0.3977989	null	FALSE
GO:0015851	nucleobase transport	0.1212884	2.33687254618969	6.53974482589302	1.4471580	-6.123632	0.9383012	0.4022496	null	FALSE
GO:0007166	cell surface receptor signaling pathway	0.5794888	-2.97737955070101	-2.96789618206486	2.1139434	-3.979747	0.7925644	0.4023812	null	FALSE
GO:0034434	sterol esterification	0.0089843	4.19647153231861	-3.30807347561018	0.4771213	-4.442857	0.9112561	0.4053371	null	FALSE
GO:0042273	ribosomal large subunit biogenesis	0.4267553	5.14885619838131	3.37068756934013	1.9822712	-12.711372	0.9158063	0.4059178	null	FALSE
GO:0034394	protein localization to cell surface	0.0134765	3.06053071892497	6.21287935802024	0.6020600	-3.600617	0.9237543	0.4074874	null	FALSE
GO:1902325	negative regulation of chlorophyll biosynthetic process	0.0044922	-5.98963304880252	2.282775399413	0.3010300	-3.756088	0.8663889	0.4086043	null	FALSE
GO:0048240	sperm capacitation	0.0044922	-1.96228539436139	6.26559372072266	0.3010300	-6.984336	0.8960849	0.4096889	null	FALSE
GO:0009914	hormone transport	0.4447240	-0.549214174220962	2.70176778585294	2.0000000	-20.141593	0.8112191	0.4103707	null	FALSE
GO:0009992	cellular water homeostasis	0.0089843	1.77970112983707	1.85521767097798	0.4771213	-1.795237	0.8427811	0.4103707	null	FALSE
GO:1902184	negative regulation of shoot apical meristem development	0.0044922	-6.61695589831534	2.37184128334566	0.3010300	-3.583883	0.8646357	0.4125001	null	FALSE
GO:0006970	response to osmotic stress	2.3449081	0.0689642382029608	-5.48009444856066	2.7185017	-2.680020	0.9189246	0.4182879	null	FALSE
GO:0035864	response to potassium ion	0.0269530	-1.34490516561606	-7.18846102184972	0.8450980	-5.334631	0.9311235	0.4217509	null	FALSE
GO:0034614	cellular response to reactive oxygen species	0.1482413	-0.848474399571505	-5.77724018734394	1.5314789	-14.569446	0.8723508	0.4299938	null	FALSE
GO:0010469	regulation of signaling receptor activity	0.3059115	-5.84730512557782	-0.187017009096381	1.8260748	-34.558948	0.8191877	0.4321507	null	FALSE
GO:1905255	regulation of RNA binding transcription factor activity	0.0044922	0.35458954738628	-0.474621928081848	0.3010300	-6.024302	0.9124346	0.4321507	null	FALSE
GO:0097167	circadian regulation of translation	0.0044922	-3.68356393859749	3.48731083991862	0.3010300	-2.803332	0.8558297	0.4338639	null	FALSE
GO:2000117	negative regulation of cysteine-type endopeptidase activity	0.0044922	-5.49358262617031	1.79314648611929	0.3010300	-9.726094	0.8426812	0.4338639	null	FALSE
GO:0070667	negative regulation of mast cell proliferation	0.1886708	-6.00531392076874	1.3473867534237	1.6334685	-6.024302	0.8418425	0.4380368	null	FALSE
GO:0006470	protein dephosphorylation	0.8624949	6.56940178052192	-0.435909870227967	2.2855573	-5.193447	0.9073305	0.4380416	null	FALSE
GO:0035725	sodium ion transmembrane transport	0.0673824	1.73428814409649	6.43693459152219	1.2041200	-14.994073	0.9106587	0.4453910	null	FALSE
GO:0018107	peptidyl-threonine phosphorylation	0.0628903	6.8756386105299	-0.128729740084312	1.1760913	-1.722416	0.9202151	0.4457143	null	FALSE
GO:0046949	fatty-acyl-CoA biosynthetic process	0.0044922	5.66028273741811	-2.27828864293606	0.3010300	-2.400073	0.8794172	0.4484771	null	FALSE
GO:0009311	oligosaccharide metabolic process	0.4267553	4.85417938552193	-5.81170042760575	1.9822712	-10.336692	0.9493902	0.4499218	null	FALSE
GO:0050935	iridophore differentiation	0.0224608	-3.99672512192651	6.24243273707432	0.7781513	-2.977004	0.9244586	0.4542384	null	FALSE
GO:0060776	simple leaf morphogenesis	0.0224608	-2.83705124121946	6.48853504997869	0.7781513	-15.554054	0.9134994	0.4581927	null	FALSE
GO:0000025	maltose catabolic process	0.0089843	4.85738269526431	-5.42646089784771	0.4771213	-4.860108	0.9350785	0.4597570	null	FALSE
GO:0051782	negative regulation of cell division	0.0404295	-6.43071423585499	1.81156678710058	1.0000000	-4.382314	0.8559921	0.4611342	null	FALSE
GO:0031098	stress-activated protein kinase signaling cascade	0.3252325	-2.60552027263613	-3.21554772072357	1.8633229	-17.979816	0.7855473	0.4634292	null	FALSE
GO:0006952	defense response	7.2503481	0.0314499944297088	-5.79567466494177	3.2081725	-56.039009	0.9151060	0.4644931	null	FALSE
GO:0071368	cellular response to cytokinin stimulus	0.3593729	-1.29506278476673	-6.0805953674813	1.9084850	-9.739302	0.8807703	0.4666976	null	FALSE
GO:0070134	positive regulation of mitochondrial translational initiation	0.0134765	-6.36694446939025	-1.69411053056558	0.6020600	-3.636248	0.8555298	0.4670366	null	FALSE
GO:1904541	fungal-type cell wall disassembly involved in conjugation with cellular fusion	0.0044922	3.09813714562868	3.2453895741932	0.3010300	-5.079019	0.8990940	0.4680595	null	FALSE
GO:0061614	pri-miRNA transcription by RNA polymerase II	0.0044922	5.61933055702265	-1.71448693286286	0.3010300	-2.077188	0.8992878	0.4728445	null	FALSE
GO:0042773	ATP synthesis coupled electron transport	0.2830062	3.36814041994416	-6.80238306847148	1.8061800	-7.751660	0.9373885	0.4728635	null	FALSE
GO:0010258	NADH dehydrogenase complex (plastoquinone) assembly	0.0359373	5.32898079361248	3.21313138973468	0.9542425	-1.546163	0.9209507	0.4782752	null	FALSE
GO:0018063	cytochrome c-heme linkage	0.0374347	5.38257192304476	1.90185175175846	0.9542425	-3.227392	0.8786739	0.4795346	null	FALSE
GO:0009626	plant-type hypersensitive response	0.3279278	-0.0645993511794241	-5.73453912013335	1.8692317	-16.522254	0.8504587	0.4809374	null	FALSE
GO:0006005	L-fucose biosynthetic process	0.0044922	5.61012883971407	-4.26009973222212	0.3010300	-5.700801	0.9254947	0.4814675	null	FALSE
GO:0006203	dGTP catabolic process	0.0134765	5.31997601887193	-2.33826895348715	0.6020600	-1.983263	0.8834027	0.4816793	null	FALSE
GO:0051607	defense response to virus	0.2246081	0.673145862390203	-6.14935930984826	1.7075702	-4.801239	0.9116839	0.4865194	null	FALSE
GO:0031333	negative regulation of protein-containing complex assembly	0.0853511	-6.23830133228561	1.47298529863809	1.3010300	-5.068979	0.8436196	0.4869655	null	FALSE
GO:0042351	‘de novo’ GDP-L-fucose biosynthetic process	0.0179686	5.50141599509654	-2.44641456314623	0.6989700	-3.583883	0.8784326	0.4886794	null	FALSE
GO:0033292	T-tubule organization	0.0716381	0.0550546048029063	4.51030154761443	1.2041200	-15.023967	0.8709968	0.4928611	null	FALSE
GO:0036309	protein localization to M-band	0.2713265	2.60441460938127	5.98345556737136	1.7853298	-15.023967	0.9058106	0.4950361	null	FALSE
GO:0043627	response to estrogen	1.1430508	-1.10539716971315	-6.47891019469376	2.4065402	-1.596382	0.9062300	0.4956526	null	FALSE
GO:0034080	CENP-A containing chromatin assembly	0.0134765	4.7757344146028	3.05646362791689	0.6020600	-5.066592	0.9156426	0.4961586	null	FALSE
GO:0035967	cellular response to topologically incorrect protein	0.2964826	-0.824404283095017	-5.88342201447445	1.8260748	-3.743924	0.8732979	0.4967938	null	FALSE
GO:0070121	Kupffer’s vesicle development	1.4053739	-3.56022365907919	6.44173706427459	2.4927604	-2.089786	0.9328491	0.4968539	null	FALSE
GO:0032527	protein exit from endoplasmic reticulum	0.0359373	2.5980053407453	6.1551358511172	0.9542425	-8.961732	0.9129281	0.4998121	null	FALSE
GO:0006611	protein export from nucleus	0.0404295	2.64517599534805	6.24022194966324	1.0000000	-2.080898	0.9122716	0.5041019	null	FALSE
GO:0050821	protein stabilization	0.1437492	-1.46354849842862	-0.119865281434403	1.5185139	-3.421658	0.8764261	0.5055010	null	FALSE
GO:0002938	tRNA guanine ribose methylation	0.0044922	5.52048024504256	-0.520317804490838	0.3010300	-5.700801	0.9171224	0.5055471	null	FALSE
GO:0010324	membrane invagination	0.0044922	5.53013710026037	3.93768478570372	0.3010300	-6.184266	0.9426523	0.5057439	null	FALSE
GO:0009088	threonine biosynthetic process	0.0449216	6.15043310134266	-2.94895155783015	1.0413927	-8.292342	0.9012374	0.5069649	null	FALSE
GO:0097237	cellular response to toxic substance	0.8355420	-1.15622781992691	-5.94110056753255	2.2718416	-3.138372	0.8812308	0.5080142	null	FALSE
GO:0071289	cellular response to nickel ion	0.0044922	-2.11942709345298	-6.38920569681273	0.3010300	-1.958210	0.9111009	0.5089993	null	FALSE
GO:0009451	RNA modification	1.4105386	5.80265007821483	-1.00194761068033	2.4983106	-190.721643	0.8850567	0.5091922	null	FALSE
GO:0006045	N-acetylglucosamine biosynthetic process	0.0359373	6.29945475700507	-3.46278498426841	0.9542425	-3.301968	0.9270242	0.5116103	null	FALSE
GO:0052544	defense response by callose deposition in cell wall	0.0718746	2.17524068743573	2.03566769782724	1.2304489	-5.613441	0.7928344	0.5168809	null	FALSE
GO:1900426	positive regulation of defense response to bacterium	0.1167962	-6.80242004897943	-0.963791854411006	1.4313638	-13.256654	0.8340098	0.5185815	null	FALSE
GO:0006509	membrane protein ectodomain proteolysis	0.4761691	7.03949033072229	0.556692931857445	2.0293838	-10.923143	0.9415952	0.5203722	null	FALSE
GO:0060291	long-term synaptic potentiation	0.0044922	-6.12412622205951	-1.19460813833149	0.3010300	-9.880986	0.8280914	0.5247898	null	FALSE
GO:0010618	aerenchyma formation	0.0089843	-3.55713795471695	6.7234406978262	0.4771213	-14.702027	0.9416374	0.5264717	null	FALSE
GO:0042407	cristae formation	0.0089843	5.20657261599912	3.93448480006851	0.4771213	-7.288255	0.9348110	0.5269143	null	FALSE
GO:0032418	lysosome localization	0.0089843	3.22658156886419	6.10770015274335	0.4771213	-3.744559	0.9254065	0.5279778	null	FALSE
GO:0006885	regulation of pH	0.2515610	-1.77731606471181	-0.123745741535084	1.7558749	-19.750916	0.8670491	0.5303141	null	FALSE
GO:0051070	galactomannan biosynthetic process	0.0044922	6.06769751371368	-3.98729255494191	0.3010300	-6.568896	0.9266011	0.5326031	null	FALSE
GO:0033007	negative regulation of mast cell activation involved in immune response	0.0898432	-6.46366948296887	0.367757191744545	1.3222193	-6.024302	0.7946529	0.5331877	null	FALSE
GO:0010064	embryonic shoot morphogenesis	0.0044922	-2.86157215047274	6.66086654005612	0.3010300	-6.862429	0.9249109	0.5336678	null	FALSE
GO:0010365	positive regulation of ethylene biosynthetic process	0.0089843	-6.67994890366185	-1.94212878628687	0.4771213	-2.346859	0.8647769	0.5384409	null	FALSE
GO:0009617	response to bacterium	2.1113158	0.332163768633324	-6.45394100527058	2.6730209	-10.289218	0.9042746	0.5453319	null	FALSE
GO:1901684	arsenate ion transmembrane transport	0.0224608	1.7092895056019	6.7023603826824	0.7781513	-3.269484	0.9198247	0.5470253	null	FALSE
GO:1904837	beta-catenin-TCF complex assembly	0.5076142	4.98117294800146	3.17208238328036	2.0569049	-8.582182	0.9058896	0.5532566	null	FALSE
GO:0001667	ameboidal-type cell migration	0.0044922	1.82413163504652	5.50994713293166	0.3010300	-9.728819	0.9255120	0.5585812	null	FALSE
GO:0006468	protein phosphorylation	5.0671578	6.38690980538996	-0.710366847708059	3.0526939	-23.861870	0.8907838	0.5616227	null	FALSE
GO:0009867	jasmonic acid mediated signaling pathway	0.3998023	-2.71646270994647	-3.6998959367276	1.9542425	-14.238823	0.7625066	0.5617056	null	FALSE
GO:0000375	RNA splicing,via transesterification reactions	1.1140560	5.13825654444223	-1.18652907184509	2.3961993	-6.872762	0.8903925	0.5628313	null	FALSE
GO:0048509	regulation of meristem development	0.2964826	-4.86200690802058	-1.51583072922973	1.8260748	-21.686326	0.8672061	0.5634440	null	FALSE
GO:0071320	cellular response to cAMP	0.1613662	-1.45048292638054	-6.26154623801212	1.5563025	-11.821209	0.8705757	0.5656929	null	FALSE
GO:1902265	abscisic acid homeostasis	0.0089843	-0.130863223278318	0.415121050913698	0.4771213	-7.364876	0.8933171	0.5661740	null	FALSE
GO:0007066	female meiosis sister chromatid cohesion	0.0044922	1.52886836611711	3.69457815298434	0.3010300	-5.070379	0.8820383	0.5767286	null	FALSE
GO:0080003	thalianol metabolic process	0.0089843	4.13069585579259	-3.2157793215402	0.4771213	-21.022129	0.9022956	0.5772455	null	FALSE
GO:0046330	positive regulation of JNK cascade	0.0179686	-7.02992725973133	-0.84788438145451	0.6989700	-9.722158	0.8270692	0.5831457	null	FALSE
GO:0009852	auxin catabolic process	0.0089843	0.935400305028061	-0.865117453002758	0.4771213	-8.055166	0.8469552	0.5840401	null	FALSE
GO:0071229	cellular response to acid chemical	0.2740218	-1.41073809802512	-6.00592626465057	1.7923917	-8.441768	0.8885371	0.5845806	null	FALSE
GO:0048439	flower morphogenesis	0.0269530	-2.50050109561456	6.52664430784879	0.8450980	-2.532840	0.9047518	0.5912012	null	FALSE
GO:1900033	negative regulation of trichome patterning	0.0269530	-6.18354817672814	0.616874974134445	0.8450980	-9.916671	0.7941076	0.5919133	null	FALSE
GO:0045815	epigenetic maintenance of chromatin in transcription-competent conformation	0.0044922	-0.519587706006688	1.5570576925745	0.3010300	-2.677396	0.8242731	0.5941185	null	FALSE
GO:0042308	negative regulation of protein import into nucleus	0.0044922	-6.53232735169622	2.72908114736903	0.3010300	-2.526602	0.8405781	0.5958785	null	FALSE
GO:0009664	plant-type cell wall organization	0.6693320	4.74612853107068	3.43697162987276	2.1760913	-5.970664	0.9072256	0.5966817	null	FALSE
GO:0080163	regulation of protein serine/threonine phosphatase activity	0.0853511	-3.86890652619169	0.117064091439498	1.3010300	-3.131269	0.8597717	0.6025765	null	FALSE
GO:0010842	retina layer formation	0.0988275	-3.01097038895856	6.37561946273251	1.3617278	-2.222439	0.9051649	0.6076887	null	FALSE
GO:0048658	anther wall tapetum development	0.0853511	-2.33962830695249	6.39483630880768	1.3010300	-12.553830	0.8997085	0.6091195	null	FALSE
GO:0010423	negative regulation of brassinosteroid biosynthetic process	0.0044922	-4.95696656891996	1.64795195382717	0.3010300	-3.083357	0.8296222	0.6098624	null	FALSE
GO:1901526	positive regulation of mitophagy	0.0044922	-6.83613979497001	-2.1240724232086	0.3010300	-3.744559	0.8655825	0.6099952	null	FALSE
GO:0009734	auxin-activated signaling pathway	0.9972598	-2.8183980570114	-3.44764631371026	2.3483049	-1.757187	0.7550982	0.6116609	null	FALSE
GO:0098703	calcium ion import across plasma membrane	0.0170702	1.08952665568811	4.39113711798066	0.6020600	-9.880986	0.8063703	0.6124892	null	FALSE
GO:0010150	leaf senescence	0.5076142	-2.75025956181809	6.31867003235796	2.0569049	-8.133262	0.9012909	0.6130285	null	FALSE
GO:0000390	spliceosomal complex disassembly	0.0134765	4.76271522287474	1.30143285289689	0.6020600	-6.520794	0.8685268	0.6146354	null	FALSE
GO:0080126	ovary septum development	0.0044922	-2.23912257436108	6.62087520987704	0.3010300	-16.865539	0.9150752	0.6149303	null	FALSE
GO:0010930	negative regulation of auxin mediated signaling pathway	0.0134765	-6.79032535229895	1.0405015781557	0.6020600	-3.593907	0.8283117	0.6168852	null	FALSE
GO:0019348	dolichol metabolic process	0.0269530	4.58751012451654	-4.65383963213072	0.8450980	-2.857557	0.8925309	0.6194937	null	FALSE
GO:0046345	abscisic acid catabolic process	0.0269530	4.64833415575871	-4.48699609857955	0.8450980	-35.511723	0.8722247	0.6194937	null	FALSE
GO:0000226	microtubule cytoskeleton organization	0.7232379	4.33680532828395	3.06836029895767	2.2095150	-11.150007	0.9067467	0.6208058	null	FALSE
GO:1901599	(-)-pinoresinol biosynthetic process	0.0089843	5.17378398550022	-2.97817007465075	0.4771213	-2.089786	0.8871899	0.6243888	null	FALSE
GO:0009631	cold acclimation	0.2560532	0.481821271092445	-5.26833759874371	1.7634280	-2.700705	0.9319428	0.6252015	null	FALSE
GO:0010082	regulation of root meristem growth	0.1527335	-3.83802059593313	3.91634411346122	1.5440680	-54.195293	0.7841844	0.6297772	null	FALSE
GO:1900865	chloroplast RNA modification	0.1212884	5.78161821187632	-0.740903731841751	1.4471580	-3.916060	0.9024080	0.6305983	null	FALSE
GO:1905614	negative regulation of developmental vegetative growth	0.0134765	-6.37841441957142	1.97739696891109	0.6020600	-18.376548	0.8508444	0.6315937	null	FALSE
GO:0045861	negative regulation of proteolysis	0.2111316	-5.59413728981005	1.09396004945206	1.6812412	-4.202439	0.8202516	0.6323680	null	FALSE
GO:0001188	RNA polymerase I preinitiation complex assembly	0.0179686	5.03663346412665	0.644283689062218	0.6989700	-1.484557	0.8414282	0.6325950	null	FALSE
GO:0050728	negative regulation of inflammatory response	0.0346538	-6.79670029437712	1.25194931457145	0.9030900	-11.106471	0.8389393	0.6338016	null	FALSE
GO:0071731	response to nitric oxide	0.0269530	-1.48918296155401	-7.03525314810756	0.8450980	-3.335147	0.9209260	0.6341328	null	FALSE
GO:0007165	signal transduction	8.3913571	-3.12596323204849	-2.6430178561949	3.2716093	-63.045228	0.7369905	0.6344952	null	FALSE
GO:0080037	negative regulation of cytokinin-activated signaling pathway	0.0224608	-6.68982541340208	0.947823903888844	0.7781513	-9.070433	0.8231612	0.6358455	null	FALSE
GO:0015700	arsenite transport	0.0224608	1.60650419656128	6.67680495910969	0.7781513	-4.650523	0.9369611	0.6364426	null	FALSE
GO:0061734	parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization	5.4400072	-0.480263184549622	-5.53599531217201	3.0835026	-3.744559	0.8665656	0.6378968	null	FALSE
GO:0033542	fatty acid beta-oxidation,unsaturated,even number	0.0044922	4.73025215743264	-4.424283572411	0.3010300	-8.187130	0.9078885	0.6436924	null	FALSE
GO:0035024	negative regulation of Rho protein signal transduction	0.0044922	-6.9915517090758	1.24246246725117	0.3010300	-3.940235	0.8354476	0.6447047	null	FALSE
GO:1905034	regulation of antifungal innate immune response	0.0089843	-7.82154747335306	-0.250582361852178	0.4771213	-5.043818	0.8798357	0.6459136	null	FALSE
GO:0010500	transmitting tissue development	0.0179686	-2.23949303522228	6.53302320459834	0.6989700	-10.077522	0.9102808	0.6473838	null	FALSE
GO:0034307	regulation of ascospore formation	0.0044922	-5.48492595930272	-3.03598280230319	0.3010300	-4.046449	0.8788871	0.6492064	null	FALSE
GO:0032260	response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance	0.0134765	-0.186695243427756	-6.48482051835226	0.6020600	-13.981089	0.8951824	0.6492412	null	FALSE
GO:0010227	floral organ abscission	0.1123040	-2.36091205265461	6.31492220532761	1.4149733	-6.507642	0.9004983	0.6505166	null	FALSE
GO:0010942	positive regulation of cell death	0.1527335	-6.4405395176044	-1.62306459415207	1.5440680	-6.291367	0.8501657	0.6549617	null	FALSE
GO:1902042	negative regulation of extrinsic apoptotic signaling pathway via death domain receptors	0.0044922	-7.00923710351619	0.913997392878982	0.3010300	-4.331802	0.8321359	0.6549617	null	FALSE
GO:0009972	cytidine deamination	0.0404295	5.20118036489975	-2.34369566572385	1.0000000	-16.574468	0.8744144	0.6586003	null	FALSE
GO:2000026	regulation of multicellular organismal development	1.5677643	-4.79524275338634	-1.00696729979003	2.5440680	-11.646700	0.8223296	0.6593517	null	FALSE
GO:2000038	regulation of stomatal complex development	0.0539059	-4.80631176750127	-2.22276310647582	1.1139434	-6.601214	0.8608544	0.6593634	null	FALSE
GO:0030150	protein import into mitochondrial matrix	0.1257805	3.29518584816006	4.81774863107393	1.4623980	-9.888893	0.8541338	0.6622637	null	FALSE
GO:1900459	positive regulation of brassinosteroid mediated signaling pathway	0.0404295	-6.83847837445081	-0.795522814824578	1.0000000	-5.248078	0.8255615	0.6624068	null	FALSE
GO:0000028	ribosomal small subunit assembly	0.1527335	4.88921662026199	3.1856952966734	1.5440680	-4.099637	0.9036803	0.6628457	null	FALSE
GO:0009961	response to 1-aminocyclopropane-1-carboxylic acid	0.0179686	-1.60542846833042	-6.93101336811012	0.6989700	-1.744255	0.9202127	0.6635002	null	FALSE
GO:0043086	negative regulation of catalytic activity	1.1410089	-2.98172728568855	-0.40751724479405	2.4065402	-5.846133	0.8717257	0.6653174	null	FALSE
GO:0006813	potassium ion transport	0.4222632	1.85217095396345	6.31009185902108	1.9777236	-10.222966	0.9223747	0.6681870	null	FALSE
GO:0015886	heme transport	0.0718746	1.97887249911189	6.45234150843392	1.2304489	-2.509303	0.9259611	0.6715812	null	FALSE
GO:0045338	farnesyl diphosphate metabolic process	0.0898432	4.39260369732623	-4.328109928531	1.3222193	-24.428219	0.8981716	0.6735153	null	FALSE
GO:2000033	regulation of seed dormancy process	0.0718746	-4.99366897621033	-2.30371733723638	1.2304489	-2.985810	0.8504579	0.6760121	null	FALSE
GO:0010642	negative regulation of platelet-derived growth factor receptor signaling pathway	0.0686659	-6.49610331638686	0.816110604502168	1.2041200	-2.526602	0.8107486	0.6816798	null	FALSE
GO:1900449	regulation of glutamate receptor signaling pathway	0.1735903	-6.59831053697572	-0.244206962963317	1.5682017	-4.331802	0.8425925	0.6858401	null	FALSE
GO:0042073	intraciliary transport	0.0242577	3.23500620494037	4.61590276054472	0.7781513	-5.067553	0.8512920	0.6863235	null	FALSE
GO:0010727	negative regulation of hydrogen peroxide metabolic process	0.0044922	-6.04993436733582	2.37429992222028	0.3010300	-3.745360	0.8654100	0.6872518	null	FALSE
GO:0030994	primary cell septum disassembly	0.0817573	4.16408974871306	3.18190809930351	1.2787536	-6.121054	0.9274023	0.6894654	null	FALSE
GO:0010030	positive regulation of seed germination	0.0898432	-5.85721747042772	-1.84793584621474	1.3222193	-9.733717	0.8215098	0.6895163	null	FALSE
GO:0006812	cation transport	2.2505728	2.01123198087587	6.27075897160608	2.7007037	-7.647909	0.9162393	0.6936154	null	FALSE
GO:0048767	root hair elongation	0.3099591	-2.76651098485812	6.09924029146004	1.8450980	-13.755379	0.8611765	0.6947824	null	FALSE
GO:2000095	regulation of Wnt signaling pathway,planar cell polarity pathway	0.2030457	-6.11064860589494	-0.405007381177321	1.6627578	-1.707227	0.8137973	0.6948060	null	FALSE
GO:2001040	positive regulation of cellular response to drug	0.2554321	-6.4153386741569	-0.778513875038645	1.7558749	-3.743868	0.8220447	0.6964743	null	FALSE
GO:0010120	camalexin biosynthetic process	0.0494138	5.90677214626909	-1.84949258861923	1.0791812	-4.492216	0.8788899	0.6980352	null	FALSE

[1] “missing_seagrasses_GO.txt”

TermID	Name	Frequency	PlotX	PlotY	LogSize	Value	Uniqueness	Dispensability	Representative	Eliminated
GO:0010082	regulation of root meristem growth	0.1527335	0.111183809824825	2.7667618931291	1.5440680	-85.813720	0.7545471	0.0000000	null	FALSE
GO:0051762	sesquiterpene biosynthetic process	0.1123040	2.66906258552785	-6.06010465967698	1.4149733	-123.263200	0.8689906	0.0000000	null	FALSE
GO:1902025	nitrate import	0.0808589	5.44297996845699	2.2285927832585	1.2787536	-31.159863	0.9346240	0.0000000	null	FALSE
GO:0032197	transposition,RNA-mediated	0.0044922	-4.12856175253226	7.75839199587771	0.3010300	-1.308417	0.9809233	0.0198115	null	FALSE
GO:0006335	DNA replication-dependent chromatin assembly	0.0179686	-2.07880748765897	7.69487967782181	0.6989700	-2.182306	0.9442327	0.0215931	null	FALSE
GO:0009626	plant-type hypersensitive response	0.3279278	-5.40400431781216	2.84466908889163	1.8692317	-29.280582	0.7982384	0.0266051	null	FALSE
GO:0051554	flavonol metabolic process	0.0853511	5.79352896481342	-0.604931047754815	1.3010300	-32.847642	0.9553768	0.0732686	null	FALSE
GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	0.3773415	4.69186400709638	-2.22764725401825	1.9294189	-71.808392	0.9124035	0.0932346	null	FALSE
GO:0009311	oligosaccharide metabolic process	0.4267553	6.80339093660157	-0.53113502009018	1.9822712	-5.851302	0.9628224	0.1045125	null	FALSE
GO:0097503	sialylation	0.0134765	6.0980360024462	-2.25484031285442	0.6020600	-1.496617	0.9619123	0.1181081	null	FALSE
GO:0080184	response to phenylpropanoid	0.0044922	-7.78550963178701	-0.617260088722344	0.3010300	-11.208254	0.8996056	0.1196905	null	FALSE
GO:0006885	regulation of pH	0.2515610	0.319246607195391	-1.96010194569513	1.7558749	-19.446794	0.8631261	0.1360520	null	FALSE
GO:0009962	regulation of flavonoid biosynthetic process	0.1257805	-1.03870368615213	-4.23346818610855	1.4623980	-35.352336	0.9043729	0.1471751	null	FALSE
GO:0009820	alkaloid metabolic process	0.0224608	6.24593148624752	-1.30325026479214	0.7781513	-9.047597	0.9648735	0.1530936	null	FALSE
GO:0010469	regulation of signaling receptor activity	0.3059115	-3.22229265691084	-5.07694348659185	1.8260748	-45.181379	0.8265039	0.1578322	null	FALSE
GO:0090305	nucleic acid phosphodiester bond hydrolysis	1.6171780	4.57983629206453	-3.87407797547631	2.5575072	-54.837630	0.9062679	0.1763754	null	FALSE
GO:0010942	positive regulation of cell death	0.1527335	-4.76182846412871	-4.44315124426988	1.5440680	-18.391164	0.8698226	0.1784806	null	FALSE
GO:0010310	regulation of hydrogen peroxide metabolic process	0.0539059	-1.52172547510767	-4.13811933408706	1.1139434	-3.310012	0.9066640	0.2101184	null	FALSE
GO:0060294	cilium movement involved in cell motility	0.0059895	4.51085491394437	2.45164337483214	0.4771213	-13.305352	0.9156667	0.2109973	null	FALSE
GO:2000083	negative regulation of L-ascorbic acid biosynthetic process	0.0044922	-2.27068625292027	-6.3226277533515	0.3010300	-16.999532	0.8934076	0.2131819	null	FALSE
GO:0018342	protein prenylation	0.0494138	5.65914535784854	-2.44066465446815	1.0791812	-3.422514	0.9357659	0.2200164	null	FALSE
GO:0009819	drought recovery	0.0494138	-7.2242764726487	1.64204492196182	1.0791812	-28.692016	0.8663769	0.2221654	null	FALSE
GO:0097167	circadian regulation of translation	0.0044922	0.231496589165105	1.58971405334565	0.3010300	-4.377239	0.8423061	0.2266615	null	FALSE
GO:0009410	response to xenobiotic stimulus	0.0359373	-7.86878143104033	0.750286184617033	0.9542425	-6.200545	0.9022146	0.2284321	null	FALSE
GO:0036371	protein localization to T-tubule	0.0314451	5.47346324753461	3.19984222544842	0.9030900	-18.160410	0.9199490	0.2340388	null	FALSE
GO:0071466	cellular response to xenobiotic stimulus	0.0224608	-6.84913445701007	0.010957979617015	0.7781513	-8.870023	0.8697970	0.2373516	null	FALSE
GO:0009865	pollen tube adhesion	0.0134765	-0.209117949080101	4.34095028206212	0.6020600	-6.744444	0.8559881	0.2428352	null	FALSE
GO:0010025	wax biosynthetic process	0.0988275	1.9965944355713	-6.5026967762323	1.3617278	-3.394830	0.9470983	0.2514105	null	FALSE
GO:0010233	phloem transport	0.0943354	3.31981377068545	4.00074822517729	1.3424227	-5.714913	0.8357407	0.2779671	null	FALSE
GO:0045168	cell-cell signaling involved in cell fate commitment	0.1662100	-0.532347228915515	4.60951532651376	1.5797836	-23.213581	0.8323801	0.2805344	null	FALSE
GO:0009611	response to wounding	1.0062441	-6.24802092832619	2.94521309626862	2.3521825	-4.682342	0.8957601	0.2870502	null	FALSE
GO:0010375	stomatal complex patterning	0.0494138	2.17325382898601	6.00455419126758	1.0791812	-20.044409	0.8927858	0.2884235	null	FALSE
GO:0019756	cyanogenic glycoside biosynthetic process	0.1069562	4.06380127562285	-4.3760386436066	1.4313638	-30.624232	0.8870206	0.2895405	null	FALSE
GO:0008053	mitochondrial fusion	0.0778641	-1.82045179359895	7.74365658842588	1.2552725	-1.911618	0.9414539	0.2993263	null	FALSE
GO:0001101	response to acid chemical	1.7923723	-6.82803179071156	1.56123556195274	2.6020600	-7.876771	0.8652911	0.3051929	null	FALSE
GO:0033387	putrescine biosynthetic process from ornithine	0.0123534	3.78098330162263	-4.62215375476281	0.4771213	-11.194175	0.9072157	0.3196216	null	FALSE
GO:0031930	mitochondria-nucleus signaling pathway	0.0539059	-4.59908316177386	-1.09786011921404	1.1139434	-4.333619	0.8075250	0.3228612	null	FALSE
GO:0010114	response to red light	0.2785140	-7.28131754744732	3.53586917977888	1.7993405	-5.748793	0.9158559	0.3255957	null	FALSE
GO:0016567	protein ubiquitination	3.7105251	5.30475207149298	-2.80549011648221	2.9175055	-24.814192	0.9086591	0.3270943	null	FALSE
GO:0032504	multicellular organism reproduction	0.8040969	2.09121462766854	4.97574525911815	2.2552725	-1.631797	0.8926102	0.3415835	null	FALSE
GO:0048211	Golgi vesicle docking	0.0089843	5.39920114308245	3.42539957503917	0.4771213	-10.411023	0.9281242	0.3424968	null	FALSE
GO:1903553	positive regulation of extracellular exosome assembly	0.0044922	-6.05786316713257	-4.632673112201	0.3010300	-1.911602	0.9019680	0.3498300	null	FALSE
GO:0031542	positive regulation of anthocyanin biosynthetic process	0.0179686	-5.20941008070552	-4.81463756087837	0.6989700	-1.676296	0.8948536	0.3513679	null	FALSE
GO:0016045	detection of bacterium	0.0134765	-5.53287368184308	4.96914176430639	0.6020600	-6.852833	0.8894975	0.3569672	null	FALSE
GO:0044364	disruption of cells of other organism	0.0269530	-5.16928713859527	6.23984210393733	0.8450980	-1.911602	0.9481181	0.3726472	null	FALSE
GO:0060305	regulation of cell diameter	0.0044922	1.48314487059638	0.560585570647533	0.3010300	-3.355775	0.8571371	0.3779708	null	FALSE
GO:0009867	jasmonic acid mediated signaling pathway	0.3998023	-5.1293209736081	-0.496273571674476	1.9542425	-25.814933	0.7247355	0.3795777	null	FALSE
GO:0000966	RNA 5’-end processing	0.0808589	4.74002810470899	-4.23444132035852	1.2787536	-49.527264	0.9222748	0.3797277	null	FALSE
GO:0045056	transcytosis	0.0044922	3.55234606614694	4.17976083029991	0.3010300	-10.411023	0.8766246	0.3809345	null	FALSE
GO:0010555	response to mannitol	0.0673824	-7.37827838380246	0.529876716091946	1.2041200	-3.074696	0.8785807	0.3887576	null	FALSE
GO:0090559	regulation of membrane permeability	0.0089843	1.60937603584921	-1.21384445369792	0.4771213	-4.867058	0.8937880	0.3950913	null	FALSE
GO:0010618	aerenchyma formation	0.0089843	1.69555874468014	6.9804662443327	0.4771213	-18.139990	0.9176805	0.3960626	null	FALSE
GO:0080156	mitochondrial mRNA modification	0.1347648	4.99615665295853	-3.54934021526623	1.4913617	-40.112965	0.9038002	0.3977989	null	FALSE
GO:0010438	cellular response to sulfur starvation	0.0314451	-4.99487236577926	2.49290696589775	0.9030900	-2.224533	0.8478891	0.3994265	null	FALSE
GO:0007267	cell-cell signaling	0.3414042	-7.08807416175237	-2.78778831852121	1.8864907	-9.465565	0.9203509	0.4013598	null	FALSE
GO:0080027	response to herbivore	0.0808589	-5.64672823166232	4.46725783769767	1.2787536	-8.477227	0.8880317	0.4067789	null	FALSE
GO:0034394	protein localization to cell surface	0.0134765	5.62712303894214	3.29894358316998	0.6020600	-6.337011	0.9270314	0.4074874	null	FALSE
GO:0006952	defense response	7.2503481	-5.98684595603123	2.4694558905719	3.2081725	-92.003340	0.8719910	0.4100881	null	FALSE
GO:0010221	negative regulation of vernalization response	0.0044922	-3.25840147054671	-6.5301819037858	0.3010300	-13.253502	0.8819520	0.4116470	null	FALSE
GO:0009609	response to symbiotic bacterium	0.0089843	-5.45318783419146	5.12046874428477	0.4771213	-4.928401	0.8990011	0.4143200	null	FALSE
GO:0009871	jasmonic acid and ethylene-dependent systemic resistance,ethylene mediated signaling pathway	0.0089843	-5.18613043632847	1.11261351395878	0.4771213	-9.345083	0.7613423	0.4175401	null	FALSE
GO:0035864	response to potassium ion	0.0269530	-7.839441627431	0.391884953014789	0.8450980	-7.406889	0.8977954	0.4217509	null	FALSE
GO:0007166	cell surface receptor signaling pathway	0.5794888	-4.30868458340418	-0.841189493010074	2.1139434	-9.718756	0.7705725	0.4253892	null	FALSE
GO:0009625	response to insect	0.1482413	-5.75479493693829	4.25454672512915	1.5314789	-18.198404	0.8827903	0.4269324	null	FALSE
GO:1905034	regulation of antifungal innate immune response	0.0089843	-4.50533153692146	-6.2059545619523	0.4771213	-13.646261	0.8893037	0.4305344	null	FALSE
GO:1904526	regulation of microtubule binding	0.0044922	-0.0269760863775666	-7.00938333979799	0.3010300	-7.008658	0.9140743	0.4321507	null	FALSE
GO:1905255	regulation of RNA binding transcription factor activity	0.0044922	-0.16098133315073	-7.10314835488611	0.3010300	-7.822215	0.9140743	0.4321507	null	FALSE
GO:2000117	negative regulation of cysteine-type endopeptidase activity	0.0044922	-1.81376972942032	-6.12895905545191	0.3010300	-13.861990	0.8713185	0.4321507	null	FALSE
GO:0003283	atrial septum development	1.6401201	1.34400666837115	5.55860188206159	3.2564772	-4.737842	0.8398372	0.4359177	null	FALSE
GO:1901021	positive regulation of calcium ion transmembrane transporter activity	0.0065885	-5.04009283132777	-5.08070181025684	0.3010300	-18.160410	0.8497678	0.4428862	null	FALSE
GO:0000304	response to singlet oxygen	0.0583981	-7.24787607969647	1.34267643842359	1.1461280	-14.098692	0.8696953	0.4434063	null	FALSE
GO:0097185	cellular response to azide	0.0561520	-6.90125474110264	0.44022011409868	1.1139434	-12.341169	0.8528112	0.4472027	null	FALSE
GO:0002011	morphogenesis of an epithelial sheet	0.0134765	1.26589939243542	7.00003952705678	0.6020600	-9.046140	0.9128097	0.4499787	null	FALSE
GO:0007492	endoderm development	0.0134765	0.940379547041006	7.06230180349092	0.6020600	-1.911602	0.9223529	0.4499787	null	FALSE
GO:0002213	defense response to insect	0.0943354	-5.49832995527527	4.03420141948302	1.3424227	-4.652790	0.8765845	0.4532505	null	FALSE
GO:0071218	cellular response to misfolded protein	0.1033197	-6.01405297776291	1.22792174696083	1.3802112	-2.846974	0.8331602	0.4588220	null	FALSE
GO:0019722	calcium-mediated signaling	0.3279278	-4.27970243215673	-0.702165634250877	1.8692317	-2.599013	0.7748853	0.4636835	null	FALSE
GO:0006654	phosphatidic acid biosynthetic process	0.0269530	2.76182625204923	-6.01370252171912	0.8450980	-10.365896	0.8965692	0.4645185	null	FALSE
GO:0046394	carboxylic acid biosynthetic process	2.1742060	2.99380207231341	-5.20185159980573	2.6857417	-2.668466	0.8867768	0.4686518	null	FALSE
GO:0071236	cellular response to antibiotic	0.8690604	-6.33343665912791	1.11839143088103	2.2878017	-19.250722	0.8278819	0.4715434	null	FALSE
GO:0002084	protein depalmitoylation	0.0134765	5.05945420115825	-2.21833723716029	0.6020600	-5.504809	0.9248904	0.4823511	null	FALSE
GO:0050821	protein stabilization	0.1437492	0.577166436711259	-1.78143444580501	1.5185139	-1.499445	0.8732697	0.4825149	null	FALSE
GO:0051607	defense response to virus	0.2246081	-5.61986614953666	3.79892766062216	1.7075702	-3.609544	0.8680501	0.4865194	null	FALSE
GO:0033292	T-tubule organization	0.0716381	0.155649568299661	6.50855952174405	1.2041200	-18.160410	0.8520286	0.4928611	null	FALSE
GO:0036309	protein localization to M-band	0.2713265	5.30176850818104	3.00397739198702	1.7853298	-18.160410	0.9097144	0.4950361	null	FALSE
GO:0036159	inner dynein arm assembly	0.0179686	-2.21865571762561	7.45446064071217	0.6989700	-8.286640	0.9245271	0.4957761	null	FALSE
GO:0032527	protein exit from endoplasmic reticulum	0.0359373	5.50404042894256	3.00852459126901	0.9542425	-15.058593	0.9201985	0.4998121	null	FALSE
GO:0006649	phospholipid transfer to membrane	0.0044922	4.6085383556988	3.91432364333218	0.3010300	-3.066668	0.9117770	0.5057439	null	FALSE
GO:0097237	cellular response to toxic substance	0.8355420	-6.27218167916919	1.03275829503484	2.2718416	-2.921033	0.8284769	0.5080142	null	FALSE
GO:0009451	RNA modification	1.4105386	4.79055479120816	-3.4493490093767	2.4983106	-31.353508	0.8982904	0.5091922	null	FALSE
GO:0052544	defense response by callose deposition in cell wall	0.0718746	-2.44270869747844	2.72630012151416	1.2304489	-12.781323	0.7778892	0.5168809	null	FALSE
GO:0042177	negative regulation of protein catabolic process	0.0134765	-1.97474664796636	-6.30455694418522	0.6020600	-6.581183	0.8919636	0.5178942	null	FALSE
GO:0060776	simple leaf morphogenesis	0.0224608	1.79539279097035	6.1616361396968	0.7781513	-6.747710	0.8771229	0.5240669	null	FALSE
GO:0009733	response to auxin	1.8597547	-6.78852035074179	1.2113549858907	2.6180481	-4.959063	0.8462783	0.5265885	null	FALSE
GO:0035024	negative regulation of Rho protein signal transduction	0.0044922	-3.40027747793525	-6.19800556915676	0.3010300	-9.928858	0.8655127	0.5272151	null	FALSE
GO:0035600	tRNA methylthiolation	0.0089843	5.14731943343169	-3.70885145518597	0.4771213	-2.034953	0.9230223	0.5275488	null	FALSE
GO:0009914	hormone transport	0.4447240	2.08166178172722	0.0805587168738593	2.0000000	-16.231674	0.8095167	0.5303141	null	FALSE
GO:0009960	endosperm development	0.1437492	1.21848775298947	6.061745978994	1.5185139	-5.605621	0.8662183	0.5317308	null	FALSE
GO:2000280	regulation of root development	0.3593729	-2.16915329824715	-3.3983577367376	1.9084850	-76.487902	0.8856727	0.5325899	null	FALSE
GO:0071368	cellular response to cytokinin stimulus	0.3593729	-6.38502040664333	0.759979111989587	1.9084850	-13.837441	0.8232207	0.5432496	null	FALSE
GO:0009617	response to bacterium	2.1113158	-5.81781852613711	3.50047736957181	2.6730209	-21.588290	0.8525457	0.5453319	null	FALSE
GO:1901684	arsenate ion transmembrane transport	0.0224608	5.46288530688735	2.01916378426293	0.7781513	-10.319721	0.9233873	0.5470253	null	FALSE
GO:1902290	positive regulation of defense response to oomycetes	0.0449216	-4.71563664806205	-5.28077502615243	1.0413927	-10.069439	0.8615933	0.5510349	null	FALSE
GO:0060465	pharynx development	1.4053739	1.23786470711203	5.72806471323932	2.4927604	-1.911602	0.8561079	0.5514316	null	FALSE
GO:0048312	intracellular distribution of mitochondria	0.0044922	4.50144892037198	3.55377156243945	0.3010300	-1.911602	0.9084221	0.5580199	null	FALSE
GO:0006468	protein phosphorylation	5.0671578	5.00977395833693	-3.06957104808849	3.0526939	-45.943129	0.8941858	0.5616227	null	FALSE
GO:0071447	cellular response to hydroperoxide	0.1529288	-6.20238116755193	1.34719906470536	1.5440680	-5.949636	0.8203493	0.5631622	null	FALSE
GO:0048509	regulation of meristem development	0.2964826	-2.01909518595265	-3.32067167852402	1.8260748	-33.358186	0.8872923	0.5634440	null	FALSE
GO:1902265	abscisic acid homeostasis	0.0089843	1.61068544216157	-1.01075857678531	0.4771213	-4.605998	0.8896166	0.5661740	null	FALSE
GO:0010930	negative regulation of auxin mediated signaling pathway	0.0134765	-3.39292499012791	-5.90457409726418	0.6020600	-6.338787	0.8582675	0.5666125	null	FALSE
GO:0009826	unidimensional cell growth	1.0736265	1.3231816229193	6.67654142400579	2.3802112	-4.149882	0.8638742	0.5680023	null	FALSE
GO:0007498	mesoderm development	0.3503886	1.03359998155537	6.7533578773194	1.8976271	-1.651274	0.9022502	0.5707614	null	FALSE
GO:0072498	embryonic skeletal joint development	1.8732312	1.3976474641056	5.68241796753417	2.6211763	-1.911602	0.8522091	0.5710239	null	FALSE
GO:0009644	response to high light intensity	0.2785140	-7.36148493377265	3.42837449422644	1.7993405	-2.721079	0.9158559	0.5759002	null	FALSE
GO:0009961	response to 1-aminocyclopropane-1-carboxylic acid	0.0179686	-7.53381550410242	0.0518546751479098	0.6989700	-9.695553	0.8846771	0.5766178	null	FALSE
GO:0080003	thalianol metabolic process	0.0089843	3.3154216278461	-5.84250101203462	0.4771213	-26.491320	0.8906941	0.5772455	null	FALSE
GO:0048512	circadian behavior	0.0224608	6.69857384554607	0.250848416353312	0.7781513	-1.869036	0.9951277	0.5780757	null	FALSE
GO:0098660	inorganic ion transmembrane transport	1.9810431	5.3268055209064	2.4730642702148	2.6454223	-11.268271	0.8988203	0.5817700	null	FALSE
GO:0007584	response to nutrient	0.0583981	-6.56733093676936	2.42497738571109	1.1461280	-1.943252	0.8709867	0.5817840	null	FALSE
GO:0009852	auxin catabolic process	0.0089843	2.09366185787396	-1.5328902802214	0.4771213	-10.033313	0.8440032	0.5840401	null	FALSE
GO:0071229	cellular response to acid chemical	0.2740218	-6.61480296663586	0.773944151769752	1.7923917	-21.633441	0.8389718	0.5845806	null	FALSE
GO:0010376	stomatal complex formation	0.0224608	1.52765009831058	6.29924281267393	0.7781513	-6.020245	0.8675775	0.5847861	null	FALSE
GO:1905663	positive regulation of telomerase RNA reverse transcriptase activity	0.0485153	-1.34857620430401	-5.44163199907709	1.0413927	-1.471697	0.8770473	0.5862896	null	FALSE
GO:0009745	sucrose mediated signaling	0.0089843	-5.98523376022104	-0.606053495638217	0.4771213	-2.254390	0.7900171	0.5951780	null	FALSE
GO:0009664	plant-type cell wall organization	0.6693320	-1.8837888401575	7.40272638669654	2.1760913	-8.936784	0.9262356	0.5956427	null	FALSE
GO:0003341	cilium movement	0.0059895	-3.2925561816181	7.81139443178302	0.3010300	-14.626165	0.9526986	0.5985002	null	FALSE
GO:0080141	regulation of jasmonic acid biosynthetic process	0.0269530	-1.33909305452227	-4.85199547668217	0.8450980	-5.405514	0.9057182	0.6034067	null	FALSE
GO:0035725	sodium ion transmembrane transport	0.0673824	5.68880427023917	2.37966000834204	1.2041200	-3.931946	0.9197284	0.6086318	null	FALSE
GO:0009734	auxin-activated signaling pathway	0.9972598	-4.93508921589008	-0.56113061417954	2.3483049	-16.624630	0.7168559	0.6116609	null	FALSE
GO:0010150	leaf senescence	0.5076142	1.65546109763556	5.86240546808663	2.0569049	-3.522762	0.8602333	0.6130285	null	FALSE
GO:0046345	abscisic acid catabolic process	0.0269530	2.96260366794837	-5.37653219969527	0.8450980	-46.799108	0.8550913	0.6194937	null	FALSE
GO:1901599	(-)-pinoresinol biosynthetic process	0.0089843	3.68613559037858	-4.93833698115244	0.4771213	-3.071305	0.8966972	0.6243888	null	FALSE
GO:0045926	negative regulation of growth	0.1751943	-2.53376477435149	-5.39382036776906	1.6020600	-13.458879	0.8791890	0.6297772	null	FALSE
GO:1900865	chloroplast RNA modification	0.1212884	4.93786437416325	-3.62163465556103	1.4471580	-1.937036	0.9101989	0.6305983	null	FALSE
GO:1905614	negative regulation of developmental vegetative growth	0.0134765	-2.4564751946217	-5.84862958042064	0.6020600	-1.756960	0.8834762	0.6315937	null	FALSE
GO:0048438	floral whorl development	0.8085890	1.53183512187056	5.76655651887693	2.2576786	-2.152846	0.8543795	0.6324877	null	FALSE
GO:0031640	killing of cells of other organism	1.3072189	-5.27286195952391	6.06915866442696	2.4653829	-1.911602	0.9026632	0.6338299	null	FALSE
GO:0007422	peripheral nervous system development	3.6745878	1.32787511685743	5.81771103590405	2.9132839	-1.651274	0.8337928	0.6342863	null	FALSE
GO:0007165	signal transduction	8.3913571	-4.31643040396434	-0.916127636913014	3.2716093	-87.009031	0.7076707	0.6344952	null	FALSE
GO:0048821	erythrocyte development	0.0179686	0.828866330552813	3.54137889021978	0.6989700	-1.679676	0.7400395	0.6349558	null	FALSE
GO:0015700	arsenite transport	0.0224608	5.63070433465104	2.05679020385391	0.7781513	-12.058546	0.9404722	0.6364426	null	FALSE
GO:0048658	anther wall tapetum development	0.0853511	1.7571946317785	5.72677319940928	1.3010300	-1.852856	0.8749979	0.6449005	null	FALSE
GO:0010208	pollen wall assembly	0.2021473	0.485940997012976	6.02130491907277	1.6627578	-2.259532	0.7957302	0.6467488	null	FALSE
GO:0015708	silicic acid import across plasma membrane	0.0331729	5.64208836036156	2.18471897855383	0.9030900	-3.071305	0.9191437	0.6528448	null	FALSE
GO:0048235	pollen sperm cell differentiation	0.1572256	0.925506630987793	5.68123478217873	1.5563025	-1.640496	0.8451238	0.6530142	null	FALSE
GO:0051513	regulation of monopolar cell growth	0.0224608	-2.94735517692159	-3.74692527613606	0.7781513	-2.081591	0.8907853	0.6532683	null	FALSE
GO:0042742	defense response to bacterium	1.6216702	-5.73091177096451	3.34929335714126	2.5587086	-9.971460	0.8382382	0.6545694	null	FALSE
GO:0012502	induction of programmed cell death	0.0044922	-5.93759609823555	-4.87232181908598	0.3010300	-7.493662	0.8941082	0.6549617	null	FALSE
GO:1902042	negative regulation of extrinsic apoptotic signaling pathway via death domain receptors	0.0044922	-3.78318764288402	-5.96307016823233	0.3010300	-5.949636	0.8567293	0.6549617	null	FALSE
GO:2000026	regulation of multicellular organismal development	1.5677643	-2.36197565872973	-3.56054428139018	2.5440680	-25.760968	0.8333533	0.6593517	null	FALSE
GO:0043086	negative regulation of catalytic activity	1.1410089	-0.873222094017457	-5.10865547909454	2.4065402	-2.990442	0.8755621	0.6653174	null	FALSE
GO:0009737	response to abscisic acid	2.3538925	-6.70350897899573	1.28426151484217	2.7201593	-4.235759	0.8304505	0.6656796	null	FALSE
GO:0009740	gibberellic acid mediated signaling pathway	0.3503886	-5.20216650587565	-0.521246291776241	1.8976271	-4.867794	0.7296730	0.6682909	null	FALSE
GO:0009742	brassinosteroid mediated signaling pathway	0.3638651	-5.26869771535053	-0.564880728490474	1.9138139	-3.724605	0.7228966	0.6705553	null	FALSE
GO:0009866	induced systemic resistance,ethylene mediated signaling pathway	0.0179686	-5.19839623339342	-0.269754346688175	0.6989700	-3.234087	0.6902924	0.6707259	null	FALSE
GO:0017148	negative regulation of translation	0.3503886	-2.50179417625136	-4.96166874720712	1.8976271	-4.095920	0.8557567	0.6727984	null	FALSE
GO:0045338	farnesyl diphosphate metabolic process	0.0898432	2.57731800649867	-6.50598397490842	1.3222193	-43.241889	0.8844653	0.6735153	null	FALSE
GO:0061025	membrane fusion	0.3324199	-1.58387348387523	7.67557710668011	1.8750613	-3.333018	0.9348984	0.6738613	null	FALSE
GO:0009684	indoleacetic acid biosynthetic process	0.0494138	2.53011270338798	-3.33221563593376	1.0791812	-8.410423	0.7768718	0.6856031	null	FALSE
GO:1900449	regulation of glutamate receptor signaling pathway	0.1735903	-3.79219331906137	-5.00122540676798	1.5682017	-5.949636	0.8558237	0.6858401	null	FALSE
GO:0048265	response to pain	11.9626252	-3.20202044794061	3.26354182435924	3.4255342	-1.911602	0.7401901	0.6889007	null	FALSE
GO:0010030	positive regulation of seed germination	0.0898432	-4.28867063196146	-4.15921522217761	1.3222193	-15.745440	0.8431154	0.6895163	null	FALSE
GO:0071805	potassium ion transmembrane transport	0.2560532	5.47554425784124	2.40954383639216	1.7634280	-2.235091	0.9120567	0.6907954	null	FALSE

[1] “missing_zmar_vs_all_GO.txt”

TermID	Name	Frequency	PlotX	PlotY	LogSize	Value	Uniqueness	Dispensability	Representative	Eliminated
GO:0010082	regulation of root meristem growth	0.1527335	1.80689129145056	2.86254527917745	1.5440680	-65.058597	0.7962497	0.0000000	null	FALSE
GO:0048512	circadian behavior	0.0224608	2.67573405306037	1.94673067145108	0.7781513	-8.585635	0.9936051	0.0000000	null	FALSE
GO:0051762	sesquiterpene biosynthetic process	0.1123040	5.30626566573885	-4.1476333675656	1.4149733	-178.473129	0.8478180	0.0000000	null	FALSE
GO:1902025	nitrate import	0.0808589	2.34395492023961	6.09179940588793	1.2787536	-25.565208	0.9412517	0.0000000	null	FALSE
GO:0072089	stem cell proliferation	0.0044922	7.35137927606199	-0.745214745726002	0.3010300	-2.235250	0.9793616	0.0198115	null	FALSE
GO:0003341	cilium movement	0.0059895	6.69334582797524	-0.109442864662968	0.3010300	-12.938618	0.9561658	0.0201566	null	FALSE
GO:0090136	epithelial cell-cell adhesion	0.0134765	7.42567380690704	-0.186945857393862	0.6020600	-15.423612	0.9727170	0.0211975	null	FALSE
GO:0045218	zonula adherens maintenance	0.0494138	4.93921955455172	-0.508950150276303	1.0791812	-15.423612	0.9564499	0.0231095	null	FALSE
GO:0045199	maintenance of epithelial cell apical/basal polarity	0.0853511	7.3479166294629	-1.20723605867285	1.3010300	-3.134638	0.9750764	0.0240209	null	FALSE
GO:0008356	asymmetric cell division	0.0988275	-3.83072814408624	-7.98205810837997	1.3617278	-1.634371	0.9748152	0.0242778	null	FALSE
GO:0009626	plant-type hypersensitive response	0.3279278	-5.9064442663725	-1.37553201404688	1.8692317	-90.965700	0.8166673	0.0266051	null	FALSE
GO:0097502	mannosylation	0.1796864	7.41177830734131	0.463232380578166	1.6127839	-10.991734	0.9627293	0.0640480	null	FALSE
GO:0009780	photosynthetic NADP+ reduction	0.0044922	-2.91739549187713	-8.29874089764811	0.3010300	-9.224979	0.9471469	0.0658471	null	FALSE
GO:0006739	NADP metabolic process	0.1707021	-4.24163949949189	-7.80259821150385	1.5910646	-1.889197	0.9628679	0.0661605	null	FALSE
GO:0051554	flavonol metabolic process	0.0853511	7.0274482170937	-2.15970099850301	1.3010300	-29.467082	0.9308590	0.0732686	null	FALSE
GO:0000023	maltose metabolic process	0.0179686	6.40937217882113	-2.32828831197385	0.6989700	-9.397924	0.9268904	0.0748216	null	FALSE
GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	0.3773415	1.15403680677842	-7.31970742446221	1.9294189	-58.398957	0.8769966	0.0932346	null	FALSE
GO:1904526	regulation of microtubule binding	0.0044922	-6.92819248172427	3.91115920173013	0.3010300	-44.692162	0.9297507	0.1028503	null	FALSE
GO:1900000	regulation of anthocyanin catabolic process	0.0044922	-5.74531181529803	4.73621042844737	0.3010300	-58.235448	0.9270884	0.1174435	null	FALSE
GO:0080184	response to phenylpropanoid	0.0044922	-6.33339810951456	-4.8971035942353	0.3010300	-12.023888	0.9132274	0.1196905	null	FALSE
GO:0006629	lipid metabolic process	4.9368851	6.66875178761584	-3.39520326522534	3.0413927	-5.178395	0.9357432	0.1343063	null	FALSE
GO:0000966	RNA 5’-end processing	0.0808589	0.689748412755423	-5.13634133094112	1.2787536	-43.193677	0.8845923	0.1347712	null	FALSE
GO:0010942	positive regulation of cell death	0.1527335	-3.45373308462746	4.0169749807792	1.5440680	-9.756210	0.8819069	0.1493786	null	FALSE
GO:0042550	photosystem I stabilization	0.0134765	-5.31288754389297	4.58793772249932	0.6020600	-1.664732	0.9251158	0.1577237	null	FALSE
GO:0010119	regulation of stomatal movement	0.4492161	-3.20257907985493	3.67492281132464	2.0043214	-3.608488	0.9102617	0.1842481	null	FALSE
GO:0035902	response to immobilization stress	0.0089843	-4.52056142280257	-5.82787424831081	0.4771213	-11.892224	0.9345050	0.1969794	null	FALSE
GO:0009962	regulation of flavonoid biosynthetic process	0.1257805	-4.40768294275886	4.54447903672591	1.4623980	-26.956820	0.9162721	0.1973047	null	FALSE
GO:2000083	negative regulation of L-ascorbic acid biosynthetic process	0.0044922	-4.14871633005637	5.67497806046224	0.3010300	-15.208309	0.9081422	0.2131819	null	FALSE
GO:0018874	benzoate metabolic process	0.0089843	3.12676482951254	-5.75373397094637	0.4771213	-24.132287	0.8722929	0.2133626	null	FALSE
GO:0010731	protein glutathionylation	0.0359373	-0.0960997297979137	-7.89906972709037	0.9542425	-7.897618	0.9169940	0.2148306	null	FALSE
GO:0009819	drought recovery	0.0494138	-5.72590543315416	-3.82770140081327	1.0791812	-49.271654	0.8781749	0.2221654	null	FALSE
GO:0010881	regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion	0.0089843	-2.80095948576312	0.770138110241628	0.4771213	-31.134784	0.7464492	0.2228889	null	FALSE
GO:0048211	Golgi vesicle docking	0.0089843	3.19741883924667	5.59740816589023	0.4771213	-7.280960	0.9311962	0.2267775	null	FALSE
GO:0009410	response to xenobiotic stimulus	0.0359373	-6.90669523683696	-3.66546129942554	0.9542425	-4.474451	0.9133429	0.2284321	null	FALSE
GO:0015768	maltose transport	0.0134765	1.79069248867588	6.35417070974886	0.6020600	-8.225758	0.9603697	0.2325128	null	FALSE
GO:0046900	tetrahydrofolylpolyglutamate metabolic process	0.0314451	0.115008245306488	-5.66990427769856	0.9030900	-23.148594	0.8932936	0.2369653	null	FALSE
GO:0032194	ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.0044922	4.6851202729144	-5.5454397144153	0.3010300	-6.158100	0.8842323	0.2451575	null	FALSE
GO:0019756	cyanogenic glycoside biosynthetic process	0.1069562	2.02828630528112	-4.80530998615725	1.4313638	-27.544023	0.8500621	0.2582345	null	FALSE
GO:0032508	DNA duplex unwinding	0.2919905	4.57115688722189	-0.36228723821474	1.8195439	-8.740588	0.9483469	0.2718370	null	FALSE
GO:0010221	negative regulation of vernalization response	0.0044922	-2.11332420343839	6.38667425223231	0.3010300	-9.913795	0.8950821	0.2761077	null	FALSE
GO:0007613	memory	0.0943354	4.86472636779	3.18731380438745	1.3424227	-13.659670	0.8962772	0.2779671	null	FALSE
GO:0045168	cell-cell signaling involved in cell fate commitment	0.1662100	3.89073133072686	1.66314212783526	1.5797836	-25.077146	0.8672699	0.2860549	null	FALSE
GO:0009611	response to wounding	1.0062441	-4.89390152990828	-1.94187943360863	2.3521825	-13.994126	0.9070272	0.2870502	null	FALSE
GO:0010375	stomatal complex patterning	0.0494138	5.56352592183562	2.84709536375943	1.0791812	-9.239498	0.9146556	0.2884235	null	FALSE
GO:0009646	response to absence of light	0.2021473	-5.19574821448915	-5.34326425027777	1.6627578	-9.882841	0.9251993	0.3180436	null	FALSE
GO:0071236	cellular response to antibiotic	0.8690604	-5.37063875112205	-2.81923197615584	2.2878017	-28.340526	0.8425737	0.3202583	null	FALSE
GO:0090559	regulation of membrane permeability	0.0089843	0.510184520633064	1.32763619357682	0.4771213	-3.990589	0.9031348	0.3244429	null	FALSE
GO:0034394	protein localization to cell surface	0.0134765	3.04962947917092	5.50698711019421	0.6020600	-4.662473	0.9314074	0.3265777	null	FALSE
GO:0016567	protein ubiquitination	3.7105251	0.513112423816722	-7.03277689646926	2.9175055	-37.811969	0.8805105	0.3270943	null	FALSE
GO:1902075	cellular response to salt	0.0044922	-4.9223348368139	-4.1528975980716	0.3010300	-8.793402	0.8911291	0.3281054	null	FALSE
GO:0018106	peptidyl-histidine phosphorylation	0.0763667	0.530169622862807	-7.49492015986476	1.2552725	-11.443885	0.8974999	0.3366283	null	FALSE
GO:1905255	regulation of RNA binding transcription factor activity	0.0044922	-6.8658237872334	4.02537064467628	0.3010300	-6.738528	0.9297507	0.3410427	null	FALSE
GO:0051729	germline cell cycle switching,mitotic to meiotic cell cycle	0.0044922	-3.57161919655343	5.61503403856525	0.3010300	-1.944420	0.8775938	0.3498300	null	FALSE
GO:0000720	pyrimidine dimer repair by nucleotide-excision repair	0.0044922	-1.84393950457164	-4.10507531767984	0.3010300	-18.648794	0.8228111	0.3500169	null	FALSE
GO:0009649	entrainment of circadian clock	0.0808589	-5.60664638400951	0.929858844771567	1.2787536	-8.786995	0.8513633	0.3565069	null	FALSE
GO:0006368	transcription elongation from RNA polymerase II promoter	0.0763667	1.5014018865064	-5.32399023023788	1.2552725	-7.027962	0.8525233	0.3611562	null	FALSE
GO:0071475	cellular hyperosmotic salinity response	0.0089843	-4.72560924798728	-3.36360775726503	0.4771213	-25.518451	0.8640520	0.3661508	null	FALSE
GO:0071466	cellular response to xenobiotic stimulus	0.0224608	-4.99118644122304	-3.65370793516238	0.7781513	-24.704446	0.8798301	0.3682726	null	FALSE
GO:0007267	cell-cell signaling	0.3414042	-6.77545195216542	2.68100195096297	1.8864907	-11.712089	0.9377389	0.3721964	null	FALSE
GO:0044364	disruption of cells of other organism	0.0269530	-7.80479675686757	1.23882200643665	0.8450980	-1.420387	0.9565990	0.3726472	null	FALSE
GO:1901527	abscisic acid-activated signaling pathway involved in stomatal movement	0.0314451	-4.5287478809688	-0.822551928385612	0.9030900	-27.719958	0.7900026	0.3779456	null	FALSE
GO:0090305	nucleic acid phosphodiester bond hydrolysis	1.6171780	1.08463515216632	-5.4894627803963	2.5575072	-20.943718	0.8607349	0.3797277	null	FALSE
GO:0045056	transcytosis	0.0044922	3.88684358278053	4.2435742084647	0.3010300	-7.280960	0.8907465	0.3809345	null	FALSE
GO:0009871	jasmonic acid and ethylene-dependent systemic resistance,ethylene mediated signaling pathway	0.0089843	-5.56045511719441	-0.611593485932316	0.4771213	-33.260491	0.7833883	0.3823772	null	FALSE
GO:0009690	cytokinin metabolic process	0.1751943	0.594401200877769	-2.00444608519837	1.6020600	-29.269152	0.7745278	0.3859662	null	FALSE
GO:0001680	tRNA 3’-terminal CCA addition	0.0224608	0.704205597727393	-4.68422071711708	0.7781513	-9.315195	0.8895505	0.3887837	null	FALSE
GO:0009608	response to symbiont	0.0539059	-7.22303423301132	-0.0222584468048541	1.1139434	-4.377533	0.9032337	0.3943270	null	FALSE
GO:0010618	aerenchyma formation	0.0089843	6.11131101151897	1.8360626303769	0.4771213	-20.516176	0.9369195	0.3960626	null	FALSE
GO:0002215	defense response to nematode	0.0179686	-6.82867618187619	-0.25562227826424	0.6989700	-3.631838	0.9005053	0.4008543	null	FALSE
GO:0009311	oligosaccharide metabolic process	0.4267553	6.37283206915278	-2.67371684260076	1.9822712	-5.250044	0.9328493	0.4018629	null	FALSE
GO:0019450	L-cysteine catabolic process to pyruvate	0.0044922	3.7123518347393	-6.42842949118248	0.3010300	-7.764462	0.8563798	0.4022447	null	FALSE
GO:0080027	response to herbivore	0.0808589	-7.23316487047408	-0.229287095478196	1.2787536	-35.422927	0.9004287	0.4067789	null	FALSE
GO:0002238	response to molecule of fungal origin	0.0853511	-6.82145428961881	-1.74833397671759	1.3010300	-5.145763	0.8665145	0.4084989	null	FALSE
GO:0010730	negative regulation of hydrogen peroxide biosynthetic process	0.0044922	-4.03236313701265	5.74422346912088	0.3010300	-5.234106	0.9081762	0.4086043	null	FALSE
GO:0048599	oocyte development	0.0044922	5.07010225820837	1.93360280759276	0.3010300	-1.946502	0.8959250	0.4096889	null	FALSE
GO:0006952	defense response	7.2503481	-5.52113792326869	-2.00343193270851	3.2081725	-112.399149	0.8870782	0.4100881	null	FALSE
GO:0097366	response to bronchodilator	2.0370454	-6.26143703680716	-2.89037137539404	2.6570559	-15.805890	0.8804006	0.4110011	null	FALSE
GO:0071732	cellular response to nitric oxide	0.0179686	-5.53638286973325	-3.76558181372047	0.6989700	-10.024297	0.8539062	0.4112191	null	FALSE
GO:0090615	mitochondrial mRNA processing	0.0539059	0.648922325186602	-4.92583054601053	1.1139434	-27.921063	0.8849979	0.4120236	null	FALSE
GO:0006260	DNA replication	0.6423790	1.58954325907219	-7.19891548273525	2.1583625	-1.831471	0.8803870	0.4120353	null	FALSE
GO:0007166	cell surface receptor signaling pathway	0.5794888	-4.16704280297697	0.545683986170483	2.1139434	-7.866601	0.7907883	0.4151148	null	FALSE
GO:0032775	DNA methylation on adenine	0.0808589	0.371240121130548	-6.06766216033281	1.2787536	-1.562079	0.8755006	0.4216009	null	FALSE
GO:0035864	response to potassium ion	0.0269530	-6.26895197885147	-4.31052479268043	0.8450980	-6.154876	0.9042461	0.4217509	null	FALSE
GO:0052544	defense response by callose deposition in cell wall	0.0718746	-2.39183774131677	-0.757377581628035	1.2304489	-45.430189	0.7980696	0.4249084	null	FALSE
GO:0009625	response to insect	0.1482413	-7.15884768255756	-0.437900899221028	1.5314789	-46.560252	0.8959159	0.4269324	null	FALSE
GO:0010412	mannan metabolic process	0.0134765	-1.31287540541878	-7.66271605564881	0.6020600	-6.629378	0.9091739	0.4309542	null	FALSE
GO:0010469	regulation of signaling receptor activity	0.3059115	-2.29657500125711	5.06964333468977	1.8260748	-29.831756	0.8449026	0.4321507	null	FALSE
GO:0000454	snoRNA guided rRNA pseudouridine synthesis	0.0089843	1.16929937080331	-4.15226540807289	0.4771213	-1.851063	0.8742588	0.4346934	null	FALSE
GO:0071218	cellular response to misfolded protein	0.1033197	-5.07595774898302	-2.73674385738211	1.3802112	-1.530161	0.8450162	0.4371512	null	FALSE
GO:2000122	negative regulation of stomatal complex development	0.0269530	-3.00823710480026	5.40682194265844	0.8450980	-3.053135	0.8781078	0.4392129	null	FALSE
GO:0036376	sodium ion export across plasma membrane	0.0554033	2.09037768508005	5.97260921047696	1.1139434	-10.962936	0.9194143	0.4394271	null	FALSE
GO:0002237	response to molecule of bacterial origin	0.2111316	-6.66175101186459	-1.77322140694056	1.6812412	-8.204322	0.8523708	0.4396406	null	FALSE
GO:0036371	protein localization to T-tubule	0.0314451	2.97997706876201	5.65351241155784	0.9030900	-16.269247	0.9254959	0.4440885	null	FALSE
GO:0032527	protein exit from endoplasmic reticulum	0.0359373	2.62666910729542	5.61753017548162	0.9542425	-10.973980	0.9237650	0.4479977	null	FALSE
GO:0001101	response to acid chemical	1.7923723	-6.29681212291217	-2.97263165568175	2.6020600	-2.228327	0.8818272	0.4485887	null	FALSE
GO:0007492	endoderm development	0.0134765	6.21706247029672	2.17310674148325	0.6020600	-1.420387	0.9410100	0.4499787	null	FALSE
GO:0008298	intracellular mRNA localization	0.0404295	2.83142222221313	5.47560140088109	1.0000000	-3.700549	0.9268890	0.4515035	null	FALSE
GO:0002213	defense response to insect	0.0943354	-6.62303478908406	-0.674315898608757	1.3424227	-1.414236	0.8886396	0.4532505	null	FALSE
GO:0002230	positive regulation of defense response to virus by host	0.0224608	-1.37642541299063	6.22899462767864	0.7781513	-23.040381	0.8969273	0.4583337	null	FALSE
GO:0019752	carboxylic acid metabolic process	4.3214591	4.05576650949309	-6.19317228591064	2.9836263	-7.747054	0.8493378	0.4613525	null	FALSE
GO:0006654	phosphatidic acid biosynthetic process	0.0269530	4.8990427700334	-4.36013625527097	0.8450980	-1.388060	0.8614261	0.4645185	null	FALSE
GO:0002239	response to oomycetes	0.4177710	-7.0055931574685	-0.700441335320504	1.9731279	-58.651888	0.8871683	0.4664338	null	FALSE
GO:0050821	protein stabilization	0.1437492	-0.281720638060233	2.17464247259919	1.5185139	-1.545126	0.8842338	0.4689739	null	FALSE
GO:0006898	receptor-mediated endocytosis	0.1976551	2.92094345834296	5.9550794250599	1.6532125	-4.215610	0.9291139	0.4736740	null	FALSE
GO:0016074	sno(s)RNA metabolic process	0.0853511	0.861547133647133	-4.99468422069804	1.3010300	-1.846556	0.8824005	0.4749514	null	FALSE
GO:0044403	biological process involved in symbiotic interaction	0.4312475	-7.81879679108237	1.04019852707212	1.9867717	-8.969484	0.9468454	0.4754856	null	FALSE
GO:0009727	detection of ethylene stimulus	0.0134765	-7.10843812250635	-3.27170390732824	0.6020600	-17.881501	0.8982612	0.4765194	null	FALSE
GO:0010891	negative regulation of sequestering of triglyceride	0.0044922	-3.26680930592644	6.48100152023335	0.3010300	-7.518312	0.8977293	0.4769945	null	FALSE
GO:0051607	defense response to virus	0.2246081	-6.53549687264157	-0.926164950010096	1.7075702	-1.773648	0.8812170	0.4865194	null	FALSE
GO:0006885	regulation of pH	0.2515610	-0.46192803658366	2.38710680427547	1.7558749	-21.758538	0.8743013	0.4902551	null	FALSE
GO:0070365	hepatocyte differentiation	0.0494138	5.07535453130104	2.20848832623165	1.0791812	-6.381409	0.8531320	0.4914523	null	FALSE
GO:0033292	T-tubule organization	0.0716381	5.09374955934797	1.23231748531363	1.2041200	-16.269247	0.8862545	0.4928611	null	FALSE
GO:0010150	leaf senescence	0.5076142	5.39912332348501	2.56655412151307	2.0569049	-22.361394	0.8905230	0.5023722	null	FALSE
GO:0097237	cellular response to toxic substance	0.8355420	-5.45962053584381	-2.79124053222771	2.2718416	-15.715204	0.8430985	0.5080142	null	FALSE
GO:0048312	intracellular distribution of mitochondria	0.0044922	3.08129546176359	4.58604047441988	0.3010300	-1.420387	0.9210913	0.5090434	null	FALSE
GO:0009451	RNA modification	1.4105386	0.914646088812118	-5.8770869486808	2.4983106	-15.068086	0.8538397	0.5091922	null	FALSE
GO:1901726	negative regulation of histone deacetylase activity	0.0494138	-3.8897508798458	5.22510104339709	1.0791812	-8.437473	0.8797078	0.5094696	null	FALSE
GO:0009992	cellular water homeostasis	0.0089843	1.41829778859088	0.834401391094091	0.4771213	-2.939957	0.8641337	0.5104375	null	FALSE
GO:0006183	GTP biosynthetic process	0.0359373	2.62442878671062	-5.19344873237183	0.9542425	-3.957863	0.8250314	0.5116103	null	FALSE
GO:0006097	glyoxylate cycle	0.0314451	4.39431648633547	-5.88595025119278	0.9030900	-7.795499	0.8717126	0.5129277	null	FALSE
GO:0036309	protein localization to M-band	0.2713265	2.77677576581751	5.62468619724047	1.7853298	-16.269247	0.9153105	0.5168809	null	FALSE
GO:0048316	seed development	2.6099456	5.11158804602843	2.51208806194387	2.7649230	-7.268778	0.8720233	0.5172320	null	FALSE
GO:0043966	histone H3 acetylation	0.0853511	-0.109603900913311	-7.60482068690492	1.3010300	-5.253700	0.9065026	0.5222382	null	FALSE
GO:0060291	long-term synaptic potentiation	0.0044922	-1.09047178837975	3.31773237543231	0.3010300	-10.857594	0.8508110	0.5247898	null	FALSE
GO:0006432	phenylalanyl-tRNA aminoacylation	0.0134765	2.10400575195856	-5.72471942643029	0.6020600	-4.788760	0.8353541	0.5291698	null	FALSE
GO:1905034	regulation of antifungal innate immune response	0.0089843	-1.23019222746827	6.43550518002295	0.4771213	-6.383180	0.9012601	0.5294786	null	FALSE
GO:2000280	regulation of root development	0.3593729	-2.0624438283288	3.88005422503334	1.9084850	-50.621305	0.8988447	0.5325899	null	FALSE
GO:0009961	response to 1-aminocyclopropane-1-carboxylic acid	0.0179686	-6.58399119685939	-3.95945864388797	0.6989700	-2.849513	0.8875445	0.5385267	null	FALSE
GO:1901684	arsenate ion transmembrane transport	0.0224608	2.1925275557028	6.20311141217071	0.7781513	-5.722287	0.9276661	0.5470253	null	FALSE
GO:0080110	sporopollenin biosynthetic process	0.0359373	3.49249801272584	-1.06959312057485	0.9542425	-8.596184	0.7724830	0.5476284	null	FALSE
GO:0071398	cellular response to fatty acid	0.4402318	-5.59184855640647	-3.00607548484294	1.9956352	-23.248938	0.8270138	0.5536354	null	FALSE
GO:0032504	multicellular organism reproduction	0.8040969	5.17894821453627	3.22410411220851	2.2552725	-1.308625	0.9115321	0.5539836	null	FALSE
GO:1990169	stress response to copper ion	0.0224608	-5.90248284273682	-3.95638007093254	0.7781513	-4.599134	0.8972724	0.5582896	null	FALSE
GO:0009617	response to bacterium	2.1113158	-6.7228029435383	-1.0437253109709	2.6730209	-10.985497	0.8701063	0.5594759	null	FALSE
GO:0006696	ergosterol biosynthetic process	0.0479164	3.61131104998777	-4.7888396501432	1.0413927	-3.317833	0.8171388	0.5602955	null	FALSE
GO:0010114	response to red light	0.2785140	-5.14530386624401	-5.18236141356709	1.7993405	-3.646740	0.9233495	0.5606314	null	FALSE
GO:0035518	histone H2A monoubiquitination	0.0089843	-0.514772591489697	-8.01694336874233	0.4771213	-1.668789	0.9187566	0.5609440	null	FALSE
GO:0006468	protein phosphorylation	5.0671578	1.04723713121658	-6.79756203503662	3.0526939	-40.763992	0.8598127	0.5616227	null	FALSE
GO:0044255	cellular lipid metabolic process	3.4050582	5.81733420471271	-4.26154318763551	2.8802418	-2.977720	0.8700978	0.5623316	null	FALSE
GO:0010898	positive regulation of triglyceride catabolic process	0.1161545	-3.93834205898932	4.19992324037313	1.4149733	-7.518312	0.8827537	0.5626579	null	FALSE
GO:0048509	regulation of meristem development	0.2964826	-1.91357001811512	3.90538265617641	1.8260748	-18.319363	0.9002900	0.5634440	null	FALSE
GO:1902265	abscisic acid homeostasis	0.0089843	0.514054520919523	1.51294187439694	0.4771213	-2.721576	0.8990399	0.5661740	null	FALSE
GO:0010930	negative regulation of auxin mediated signaling pathway	0.0134765	-2.35779953417451	5.90600760537353	0.6020600	-4.664218	0.8708589	0.5666125	null	FALSE
GO:0060359	response to ammonium ion	0.0449216	-6.40151419589635	-3.97835120319338	1.0413927	-4.895017	0.8902623	0.5687396	null	FALSE
GO:0016099	monoterpenoid biosynthetic process	0.0044922	5.51155185060202	-4.05985388247517	0.3010300	-44.057848	0.8811846	0.5751028	null	FALSE
GO:0080003	thalianol metabolic process	0.0089843	3.85847902193482	-4.05180927932181	0.4771213	-23.185147	0.8704191	0.5772455	null	FALSE
GO:0050829	defense response to Gram-negative bacterium	0.0988275	-6.7191056378609	-0.763928318008448	1.3617278	-5.789530	0.8837626	0.5774326	null	FALSE
GO:0097167	circadian regulation of translation	0.0044922	1.32907756178742	3.09959151041191	0.3010300	-3.424748	0.8692616	0.5780757	null	FALSE
GO:0015886	heme transport	0.0718746	2.18178394030769	5.95017310180591	1.2304489	-3.017938	0.9412379	0.5790223	null	FALSE
GO:0106004	tRNA (guanine-N7)-methylation	0.0134765	0.4263728707328	-6.01824204135769	0.6020600	-4.538367	0.8841118	0.5801978	null	FALSE
GO:0071669	plant-type cell wall organization or biogenesis	1.1769462	-3.10522591282445	-7.71536182747634	2.4199557	-22.659946	0.9522018	0.5820901	null	FALSE
GO:1902290	positive regulation of defense response to oomycetes	0.0449216	-1.87635096872414	5.6206561146764	1.0413927	-11.533178	0.8706707	0.5823779	null	FALSE
GO:0071731	response to nitric oxide	0.0269530	-6.39555391546842	-4.11772441525313	0.8450980	-3.642485	0.8881428	0.5832186	null	FALSE
GO:0042631	cellular response to water deprivation	0.1707021	-5.59325446368873	-2.3333527615602	1.5910646	-21.407502	0.7942538	0.5832916	null	FALSE
GO:0070914	UV-damage excision repair	0.0089843	-2.16399539876486	-4.20623105411978	0.4771213	-2.353867	0.8122948	0.5832916	null	FALSE
GO:0060465	pharynx development	1.4053739	5.20293779439011	2.63330040194707	2.4927604	-1.420387	0.8839155	0.5838147	null	FALSE
GO:0071266	‘de novo’ L-methionine biosynthetic process	0.0044922	4.00474843833937	-5.90333526557583	0.3010300	-7.513695	0.8586559	0.5860863	null	FALSE
GO:0007165	signal transduction	8.3913571	-4.22208995620584	0.569767674554985	3.2716093	-140.613488	0.7343275	0.5893442	null	FALSE
GO:0071446	cellular response to salicylic acid stimulus	0.2605453	-5.59875700159035	-3.15418841503188	1.7708520	-16.698116	0.8351211	0.5943078	null	FALSE
GO:0009773	photosynthetic electron transport in photosystem I	0.0763667	-2.77933805075321	-8.31305501582298	1.2552725	-3.872559	0.9374888	0.5949536	null	FALSE
GO:0098660	inorganic ion transmembrane transport	1.9810431	2.42508164413856	5.89452666501351	2.6454223	-8.590303	0.9031928	0.5981993	null	FALSE
GO:0060294	cilium movement involved in cell motility	0.0059895	3.7331147928146	5.1085572338285	0.4771213	-10.751648	0.9234940	0.5985002	null	FALSE
GO:0007263	nitric oxide mediated signal transduction	0.0089843	-3.83220099037666	0.411999444391473	0.4771213	-6.950778	0.8393932	0.6046800	null	FALSE
GO:0072498	embryonic skeletal joint development	1.8732312	5.23520358475864	2.53880505553954	2.6211763	-1.420387	0.8806162	0.6058216	null	FALSE
GO:1901255	nucleotide-excision repair involved in interstrand cross-link repair	0.0044922	-1.82904278710566	-4.03813158303431	0.3010300	-1.694668	0.8228111	0.6058423	null	FALSE
GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	0.0044922	-4.89876150608237	4.28936551219417	0.3010300	-6.381409	0.9026574	0.6079678	null	FALSE
GO:0070301	cellular response to hydrogen peroxide	0.0449216	-5.13533698272725	-3.15831270670428	1.0413927	-22.946515	0.8373058	0.6082701	null	FALSE
GO:0043617	cellular response to sucrose starvation	0.0179686	-5.25691949928679	-1.18136190266175	0.6989700	-11.048683	0.8618931	0.6083709	null	FALSE
GO:0052324	plant-type cell wall cellulose biosynthetic process	0.0583981	3.54693427038131	-2.99141835488026	1.1461280	-2.751928	0.8509965	0.6106041	null	FALSE
GO:0016045	detection of bacterium	0.0134765	-7.48049650778299	0.138013714467763	0.6020600	-12.507868	0.8998251	0.6121094	null	FALSE
GO:0098703	calcium ion import across plasma membrane	0.0170702	1.58795248377888	4.64077793060022	0.6020600	-10.857594	0.8154986	0.6124892	null	FALSE
GO:0060776	simple leaf morphogenesis	0.0224608	5.62089262728837	2.42432828983869	0.7781513	-2.621028	0.9059724	0.6130285	null	FALSE
GO:0034721	histone H3-K4 demethylation,trimethyl-H3-K4-specific	0.0404295	-0.340710058892022	-7.72369586157675	1.0000000	-2.012384	0.9123704	0.6176463	null	FALSE
GO:0019348	dolichol metabolic process	0.0269530	5.02456936197249	-4.91176540774501	0.8450980	-3.425914	0.8458432	0.6194937	null	FALSE
GO:0046345	abscisic acid catabolic process	0.0269530	4.6265916022023	-4.92969339586932	0.8450980	-40.398158	0.8071561	0.6194937	null	FALSE
GO:0000226	microtubule cytoskeleton organization	0.7232379	5.26270481420531	-0.265327085659258	2.2095150	-7.960852	0.9320214	0.6208058	null	FALSE
GO:0006165	nucleoside diphosphate phosphorylation	0.3593729	2.44214429986405	-5.29754483075556	1.9084850	-2.837631	0.8271526	0.6231203	null	FALSE
GO:0010016	shoot system morphogenesis	0.7097615	5.40429548975242	2.38493019358642	2.2013971	-9.300459	0.8799230	0.6244288	null	FALSE
GO:0005977	glycogen metabolic process	0.0853511	-1.06758690260182	-7.71065206339416	1.3010300	-2.640777	0.9050998	0.6280829	null	FALSE
GO:0045926	negative regulation of growth	0.1751943	-3.07810205041759	5.54675659390552	1.6020600	-30.727605	0.8954048	0.6297772	null	FALSE
GO:2001294	malonyl-CoA catabolic process	0.0089843	2.53255850431034	-5.55185077227741	0.4771213	-5.384890	0.8254937	0.6317562	null	FALSE
GO:0046477	glycosylceramide catabolic process	0.0179686	3.09473898839212	-4.9866841682572	0.6989700	-2.369658	0.8418743	0.6330611	null	FALSE
GO:1903507	negative regulation of nucleic acid-templated transcription	1.0556579	-3.35389321695726	4.86178055239648	2.3729120	-1.958349	0.8720632	0.6336059	null	FALSE
GO:0031640	killing of cells of other organism	1.3072189	-7.83393457776616	0.93848546543795	2.4653829	-1.420387	0.9121394	0.6338299	null	FALSE
GO:0000025	maltose catabolic process	0.0089843	5.81821460687359	-2.88614430161617	0.4771213	-6.061973	0.9066224	0.6340028	null	FALSE
GO:0009877	nodulation	0.0988275	5.96904169611231	1.93353720225107	1.3617278	-4.476728	0.9257847	0.6360522	null	FALSE
GO:0015700	arsenite transport	0.0224608	2.08096057871498	6.17531674850322	0.7781513	-7.248628	0.9472324	0.6364426	null	FALSE
GO:1901599	(-)-pinoresinol biosynthetic process	0.0089843	3.07004547675236	-4.45144297282151	0.4771213	-2.479543	0.8431700	0.6369392	null	FALSE
GO:0006293	nucleotide-excision repair,preincision complex stabilization	0.0119791	-2.00810451728165	-2.32668956503957	0.4771213	-6.189060	0.7378240	0.6370511	null	FALSE
GO:0009852	auxin catabolic process	0.0089843	1.13885767267551	0.0329011697650411	0.4771213	-8.841270	0.8324548	0.6412626	null	FALSE
GO:0071229	cellular response to acid chemical	0.2740218	-5.39212756912003	-3.14572532372016	1.7923917	-15.446531	0.8519168	0.6436302	null	FALSE
GO:0048265	response to pain	11.9626252	-3.46672066731139	-1.449468603227	3.4255342	-1.420387	0.7760406	0.6480493	null	FALSE
GO:0031347	regulation of defense response	1.2308522	-1.94436040212405	5.09018147654046	2.4393327	-5.011113	0.8670982	0.6512180	null	FALSE
GO:0030639	polyketide biosynthetic process	0.0179686	4.79673938559789	-2.63305139001278	0.6989700	-9.213466	0.9204388	0.6523745	null	FALSE
GO:0051513	regulation of monopolar cell growth	0.0224608	-2.09687170094858	3.60840266845059	0.7781513	-1.337060	0.9022145	0.6532683	null	FALSE
GO:0012502	induction of programmed cell death	0.0044922	-4.67333682108193	3.77679277467516	0.3010300	-6.158100	0.9045731	0.6549617	null	FALSE
GO:1902042	negative regulation of extrinsic apoptotic signaling pathway via death domain receptors	0.0044922	-2.51197081726338	5.94016091663205	0.3010300	-4.973551	0.8702445	0.6549617	null	FALSE
GO:0000304	response to singlet oxygen	0.0583981	-5.9968511145955	-3.52370133078587	1.1461280	-12.794415	0.8795620	0.6554547	null	FALSE
GO:0009083	branched-chain amino acid catabolic process	0.1167962	3.41250050879902	-6.41910457703451	1.4313638	-20.784983	0.8460379	0.6580541	null	FALSE
GO:2000026	regulation of multicellular organismal development	1.5677643	-2.355451577408	3.78295040294291	2.5440680	-16.454846	0.8585602	0.6593517	null	FALSE
GO:0046482	para-aminobenzoic acid metabolic process	0.0179686	2.54131722439773	-6.02017414408719	0.6989700	-17.318271	0.8564305	0.6615462	null	FALSE
GO:0032870	cellular response to hormone stimulus	4.2316158	-5.62330244272511	-2.69581788647692	2.9745117	-11.812818	0.8057412	0.6623081	null	FALSE
GO:0010104	regulation of ethylene-activated signaling pathway	0.1257805	-1.71996361912027	5.43535709309755	1.4623980	-9.485067	0.8650525	0.6681187	null	FALSE
GO:0036159	inner dynein arm assembly	0.0179686	5.46254518702004	-0.344734804091709	0.6989700	-6.262662	0.9384078	0.6711268	null	FALSE
GO:0070911	global genome nucleotide-excision repair	0.0119791	-1.95876517646734	-4.0594390304246	0.4771213	-1.368073	0.8126285	0.6716500	null	FALSE
GO:0045338	farnesyl diphosphate metabolic process	0.0898432	5.58395265755231	-4.45484757040888	1.3222193	-27.993512	0.8584719	0.6735153	null	FALSE
GO:0009801	cinnamic acid ester metabolic process	0.0089843	1.86611186055742	-3.35667948944349	0.4771213	-12.547408	0.8928747	0.6748672	null	FALSE
GO:0033387	putrescine biosynthetic process from ornithine	0.0123534	2.93564097271805	-5.77355386681764	0.4771213	-9.901953	0.8537844	0.6792812	null	FALSE
GO:0080024	indolebutyric acid metabolic process	0.0224608	1.47871979096525	-3.1704443292243	0.7781513	-11.831338	0.7692882	0.6811036	null	FALSE
GO:0071368	cellular response to cytokinin stimulus	0.3593729	-5.65687848498418	-2.89151611670793	1.9084850	-11.332566	0.8432083	0.6812564	null	FALSE
GO:0008277	regulation of G protein-coupled receptor signaling pathway	0.1735903	-1.77584816043243	5.27837115003344	1.5910646	-1.694668	0.8652961	0.6858401	null	FALSE
GO:1900449	regulation of glutamate receptor signaling pathway	0.1735903	-1.8301671653427	5.31963649944989	1.5682017	-4.973551	0.8652961	0.6858401	null	FALSE
GO:0010439	regulation of glucosinolate biosynthetic process	0.0449216	-4.74464012356009	4.81543967592309	1.0413927	-11.890992	0.9114000	0.6868343	null	FALSE
GO:0010310	regulation of hydrogen peroxide metabolic process	0.0539059	-4.53756052493991	4.86947532320786	1.1139434	-1.816874	0.9154016	0.6872518	null	FALSE
GO:0010030	positive regulation of seed germination	0.0898432	-2.59823770847974	3.68727092011464	1.3222193	-13.607739	0.8615093	0.6895163	null	FALSE
GO:0003283	atrial septum development	1.6401201	5.12916513595193	2.42946142670956	3.2564772	-3.074783	0.8594190	0.6897469	null	FALSE
GO:0071805	potassium ion transmembrane transport	0.2560532	2.29244156627946	5.9157801093261	1.7634280	-1.841910	0.9141416	0.6907954	null	FALSE
GO:0005983	starch catabolic process	0.0763667	1.53650257336637	-7.68654358397557	1.2552725	-5.349583	0.8846263	0.6912926	null	FALSE
GO:1902198	3-methylbut-2-enoyl-CoA(4-) metabolic process	0.0202147	2.42603909829355	-5.54220158887793	0.6989700	-3.911273	0.8352944	0.6947265	null	FALSE
GO:0048767	root hair elongation	0.3099591	5.33297776369989	2.20674568297463	1.8450980	-2.636992	0.8459609	0.6947824	null	FALSE

[1] “missing_zmuel_vs_all_GO.txt”

TermID	Name	Frequency	PlotX	PlotY	LogSize	Value	Uniqueness	Dispensability	Representative	Eliminated
GO:0010082	regulation of root meristem growth	0.1527335	-3.14001010049016	4.47153110010964	1.5440680	-68.162621	0.8004613	0.0000000	null	FALSE
GO:0019079	viral genome replication	0.0269530	-2.38971079708921	-1.23240816291381	0.8450980	-5.731469	1.0000000	0.0000000	null	FALSE
GO:0048512	circadian behavior	0.0224608	-3.50954487379846	1.39168270597523	0.7781513	-8.853277	0.9936608	0.0000000	null	FALSE
GO:0051762	sesquiterpene biosynthetic process	0.1123040	-3.19917825544604	-5.81073737107788	1.4149733	-181.717133	0.8593891	0.0000000	null	FALSE
GO:1902025	nitrate import	0.0808589	-5.71504280750945	-2.01910773985389	1.2787536	-26.329774	0.9275676	0.0000000	null	FALSE
GO:0034090	maintenance of meiotic sister chromatid cohesion	0.0179686	-6.21937406737183	1.1531986306036	0.6989700	-13.377534	0.9341446	0.0215931	null	FALSE
GO:0009626	plant-type hypersensitive response	0.3279278	5.99902178300344	-0.23219038679763	1.8692317	-93.136155	0.8166683	0.0266051	null	FALSE
GO:0006739	NADP metabolic process	0.1707021	-5.19376346397748	-4.8888643748736	1.5910646	-1.769930	0.9669582	0.0637985	null	FALSE
GO:0051554	flavonol metabolic process	0.0853511	5.94348698408874	-5.52328741144512	1.3010300	-30.086084	0.9408664	0.0732686	null	FALSE
GO:0000023	maltose metabolic process	0.0179686	5.24028368873215	-5.82357594331315	0.6989700	-9.773194	0.9305868	0.0748216	null	FALSE
GO:0009854	oxidative photosynthetic carbon pathway	0.0404295	6.64932745232548	-5.27312279511346	1.0000000	-4.677642	0.9498394	0.0757533	null	FALSE
GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	0.3773415	2.34853457689585	-5.64362258326438	1.9294189	-70.924487	0.8907957	0.0932346	null	FALSE
GO:0080184	response to phenylpropanoid	0.0044922	6.90854508914814	3.87609201681836	0.3010300	-12.298286	0.9106411	0.1196905	null	FALSE
GO:0090615	mitochondrial mRNA processing	0.0539059	0.989901606219425	-4.66492947980959	1.1139434	-43.900684	0.9023025	0.1306016	null	FALSE
GO:0006629	lipid metabolic process	4.9368851	3.82533141823139	-6.84826840941513	3.0413927	-4.332034	0.9424280	0.1343063	null	FALSE
GO:0009962	regulation of flavonoid biosynthetic process	0.1257805	1.29976101634319	7.215919318133	1.4623980	-22.227242	0.9130691	0.1471751	null	FALSE
GO:0009820	alkaloid metabolic process	0.0224608	1.85737652809451	-7.62338572316759	0.7781513	-3.710300	0.9509119	0.1530936	null	FALSE
GO:0010469	regulation of signaling receptor activity	0.3059115	0.572947593192209	6.30671838379671	1.8260748	-31.275882	0.8358372	0.1578322	null	FALSE
GO:0010119	regulation of stomatal movement	0.4492161	0.681893479513136	4.78866603585334	2.0043214	-3.570823	0.9070496	0.1956799	null	FALSE
GO:0035902	response to immobilization stress	0.0089843	5.39250570311516	-2.57128226074225	0.4771213	-12.183306	0.9323405	0.1969794	null	FALSE
GO:0018874	benzoate metabolic process	0.0089843	-0.727926238002363	-4.02401785329903	0.4771213	-24.723612	0.8916921	0.2082263	null	FALSE
GO:0060294	cilium movement involved in cell motility	0.0059895	-5.68683396333486	-2.83629054692667	0.4771213	-20.759764	0.9121569	0.2109973	null	FALSE
GO:2000083	negative regulation of L-ascorbic acid biosynthetic process	0.0044922	-1.43220310719337	6.44000198732308	0.3010300	-15.536707	0.9019624	0.2131819	null	FALSE
GO:0010731	protein glutathionylation	0.0359373	2.56362654184219	-6.76852003799998	0.9542425	-8.376087	0.9256076	0.2148306	null	FALSE
GO:0009819	drought recovery	0.0494138	7.05098339144346	1.36984117776455	1.0791812	-20.745503	0.8736617	0.2221654	null	FALSE
GO:0034721	histone H3-K4 demethylation,trimethyl-H3-K4-specific	0.0404295	2.77104281428694	-6.57187953559459	1.0000000	-2.288318	0.9231806	0.2238850	null	FALSE
GO:0048211	Golgi vesicle docking	0.0089843	-5.08950882539813	-1.38515598832765	0.4771213	-7.655842	0.9262178	0.2267775	null	FALSE
GO:0009410	response to xenobiotic stimulus	0.0359373	7.5163628316818	2.50674390856636	0.9542425	-4.287566	0.9101026	0.2284321	null	FALSE
GO:0046900	tetrahydrofolylpolyglutamate metabolic process	0.0314451	0.555079726819208	-5.84400960432533	0.9030900	-23.721833	0.9127431	0.2308025	null	FALSE
GO:0015768	maltose transport	0.0134765	-5.27520012218615	-2.60192749661799	0.6020600	-8.593896	0.9507231	0.2325128	null	FALSE
GO:0006597	spermine biosynthetic process	0.0269530	-0.231156482878192	-6.56470385602595	0.8450980	-33.656807	0.8923135	0.2345224	null	FALSE
GO:2000142	regulation of DNA-templated transcription,initiation	0.0898432	1.40331511408293	6.85284508234286	1.3222193	-3.491777	0.9098022	0.2598207	null	FALSE
GO:0009865	pollen tube adhesion	0.0134765	-3.90633565776806	3.37402816815516	0.6020600	-2.838595	0.8848024	0.2682041	null	FALSE
GO:1900706	positive regulation of siderophore biosynthetic process	0.1379093	1.46422182786978	6.36927991311359	1.4913617	-12.168786	0.8813707	0.2682144	null	FALSE
GO:0007613	memory	0.0943354	-4.74698126370215	4.93494068839281	1.3424227	-7.987966	0.9006075	0.2779671	null	FALSE
GO:0045168	cell-cell signaling involved in cell fate commitment	0.1662100	-3.72063836314773	3.37063330991502	1.5797836	-45.831663	0.8733870	0.2805344	null	FALSE
GO:0044550	secondary metabolite biosynthetic process	0.6244104	-3.86612453822205	-5.41483140996736	2.1461280	-31.883123	0.9153338	0.2815131	null	FALSE
GO:0010881	regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion	0.0089843	2.35827825762557	2.4306784133309	0.4771213	-31.738087	0.7413410	0.2860549	null	FALSE
GO:0009611	response to wounding	1.0062441	5.37374024453142	-0.310017102780675	2.3521825	-17.276112	0.9038883	0.2870502	null	FALSE
GO:0010305	leaf vascular tissue pattern formation	0.1347648	-5.0219578378896	4.40075922601766	1.4913617	-10.168418	0.9125047	0.3105240	null	FALSE
GO:0071236	cellular response to antibiotic	0.8690604	6.19149981206299	1.6600220463326	2.2878017	-32.390998	0.8385759	0.3202583	null	FALSE
GO:0010114	response to red light	0.2785140	7.89495488572858	-0.0765391472452434	1.7993405	-10.030785	0.9134787	0.3255957	null	FALSE
GO:0034394	protein localization to cell surface	0.0134765	-4.75836589461038	-1.74103226195784	0.6020600	-4.966521	0.9268630	0.3265777	null	FALSE
GO:0016567	protein ubiquitination	3.7105251	2.07393022609002	-6.15940512969271	2.9175055	-54.100002	0.8919161	0.3270943	null	FALSE
GO:0071347	cellular response to interleukin-1	0.0044922	6.179890034352	3.24689344661192	0.3010300	-8.739769	0.8822764	0.3281054	null	FALSE
GO:1902075	cellular response to salt	0.0044922	6.07016839639292	3.40314595160646	0.3010300	-9.029474	0.8883589	0.3281054	null	FALSE
GO:0018106	peptidyl-histidine phosphorylation	0.0763667	1.18479201338016	-6.85157939300368	1.2552725	-11.606010	0.9078545	0.3366283	null	FALSE
GO:0009745	sucrose mediated signaling	0.0089843	4.88174131088788	3.34510305037095	0.4771213	-1.408307	0.8033981	0.3442773	null	FALSE
GO:0000720	pyrimidine dimer repair by nucleotide-excision repair	0.0044922	3.28281043078906	-2.00390627180504	0.3010300	-19.147167	0.8344001	0.3500169	null	FALSE
GO:0009088	threonine biosynthetic process	0.0449216	-1.03015349963336	-5.83831481878603	1.0413927	-9.669230	0.8676126	0.3530967	null	FALSE
GO:0009649	entrainment of circadian clock	0.0808589	3.69824333989716	1.75720036041079	1.2787536	-9.376970	0.8409690	0.3565069	null	FALSE
GO:0015840	urea transport	0.0224608	-5.53975136452864	-2.44853897460282	0.7781513	-2.786399	0.9473443	0.3585451	null	FALSE
GO:0071475	cellular hyperosmotic salinity response	0.0089843	5.77715262750248	1.20115114118055	0.4771213	-26.267986	0.8578631	0.3661508	null	FALSE
GO:0090305	nucleic acid phosphodiester bond hydrolysis	1.6171780	0.999793100412355	-5.30322642689573	2.5575072	-39.740579	0.8786989	0.3665118	null	FALSE
GO:0006778	porphyrin-containing compound metabolic process	0.3458964	0.680771363209985	-5.55263288293541	1.8920946	-7.149977	0.8968346	0.3675002	null	FALSE
GO:0071466	cellular response to xenobiotic stimulus	0.0224608	5.94260611575499	2.68523559813374	0.7781513	-26.952461	0.8767743	0.3682726	null	FALSE
GO:0044364	disruption of cells of other organism	0.0269530	7.09855269350372	-3.37777983318349	0.8450980	-1.511515	0.9567279	0.3726472	null	FALSE
GO:0009143	nucleoside triphosphate catabolic process	0.0269530	-0.207263324361986	-5.15241593133106	0.8450980	-11.547948	0.8584364	0.3764378	null	FALSE
GO:0045056	transcytosis	0.0044922	-4.89810509172725	0.398650860511571	0.3010300	-7.655842	0.8880990	0.3809345	null	FALSE
GO:0009871	jasmonic acid and ethylene-dependent systemic resistance,ethylene mediated signaling pathway	0.0089843	4.93466793552343	1.82344803315128	0.4771213	-34.033423	0.7780342	0.3823772	null	FALSE
GO:0007166	cell surface receptor signaling pathway	0.5794888	3.58282994331275	3.2214226101799	2.1139434	-13.075849	0.7828278	0.3892452	null	FALSE
GO:0031508	pericentric heterochromatin assembly	0.0044922	-1.98907973937807	5.09192421468939	0.3010300	-5.799869	0.8606742	0.3892522	null	FALSE
GO:0071219	cellular response to molecule of bacterial origin	0.0494138	6.39005169715418	0.207105880153755	1.0791812	-7.355856	0.8408387	0.3917536	null	FALSE
GO:0006314	intron homing	0.0224608	1.57797311160541	-4.79809807296569	0.7781513	-2.696105	0.9045879	0.3922694	null	FALSE
GO:0009608	response to symbiont	0.0539059	6.97956678017892	-1.72133744960516	1.1139434	-4.556275	0.8975579	0.3943270	null	FALSE
GO:0006885	regulation of pH	0.2515610	-0.449939148646394	2.0667663377328	1.7558749	-15.787702	0.8723212	0.3950913	null	FALSE
GO:0090559	regulation of membrane permeability	0.0089843	-0.864450204865539	0.639123038545701	0.4771213	-5.895177	0.9015602	0.3950913	null	FALSE
GO:0010618	aerenchyma formation	0.0089843	-5.73277741021151	3.46121618165629	0.4771213	-20.935965	0.9360794	0.3960626	null	FALSE
GO:0070667	negative regulation of mast cell proliferation	0.1886708	-0.616999602561968	5.65194808373646	1.6334685	-6.937809	0.8833570	0.3989108	null	FALSE
GO:0010438	cellular response to sulfur starvation	0.0314451	5.15227661460679	0.272564173394946	0.9030900	-11.472929	0.8498319	0.3994265	null	FALSE
GO:0002215	defense response to nematode	0.0179686	6.42571476888475	-1.79334570263515	0.6989700	-3.584755	0.8964457	0.4008543	null	FALSE
GO:0009311	oligosaccharide metabolic process	0.4267553	4.93332129080365	-5.93224075990185	1.9822712	-3.206762	0.9355419	0.4018629	null	FALSE
GO:0080027	response to herbivore	0.0808589	6.99022637145491	-1.54086604565886	1.2787536	-36.907775	0.8945834	0.4067789	null	FALSE
GO:0002238	response to molecule of fungal origin	0.0853511	6.77977192632594	0.26678720258363	1.3010300	-5.783769	0.8625929	0.4084989	null	FALSE
GO:0010730	negative regulation of hydrogen peroxide biosynthetic process	0.0044922	-1.27787817785056	6.45159909691027	0.3010300	-5.445886	0.8992081	0.4086043	null	FALSE
GO:0006952	defense response	7.2503481	5.82694520040002	0.173779264487369	3.2081725	-77.842261	0.8832043	0.4100881	null	FALSE
GO:0097366	response to bronchodilator	2.0370454	6.81535782336616	1.5576132263289	2.6570559	-19.329640	0.8760806	0.4110011	null	FALSE
GO:0010221	negative regulation of vernalization response	0.0044922	-1.21705563730826	6.93263666317103	0.3010300	-10.216725	0.8855898	0.4116470	null	FALSE
GO:0000966	RNA 5’-end processing	0.0808589	0.940367631109117	-4.86386114223474	1.2787536	-42.278057	0.9022833	0.4120236	null	FALSE
GO:0007267	cell-cell signaling	0.3414042	5.26700583636871	5.92302622485698	1.8864907	-12.693990	0.9374458	0.4151148	null	FALSE
GO:0035864	response to potassium ion	0.0269530	7.28197100210295	2.71973686192133	0.8450980	-6.384732	0.9023575	0.4217509	null	FALSE
GO:0052544	defense response by callose deposition in cell wall	0.0718746	2.06314878014877	0.072431768793126	1.2304489	-56.608053	0.7869065	0.4249084	null	FALSE
GO:1902616	acyl carnitine transmembrane transport	0.2648333	-5.41812535291211	-2.13191681597381	1.7708520	-4.435575	0.9118470	0.4263133	null	FALSE
GO:0009625	response to insect	0.1482413	6.91666048113254	-1.33908726749511	1.5314789	-48.167708	0.8897974	0.4269324	null	FALSE
GO:0009052	pentose-phosphate shunt,non-oxidative branch	0.0359373	-1.52210763609708	-7.3272443626016	0.9542425	-4.247369	0.9140941	0.4273002	null	FALSE
GO:0043603	cellular amide metabolic process	3.8452900	1.7862495290099	-5.34055413518591	2.9329808	-1.610456	0.8995416	0.4300273	null	FALSE
GO:0010412	mannan metabolic process	0.0134765	4.34594488829512	-5.58686103532362	0.6020600	-6.890912	0.9162539	0.4309542	null	FALSE
GO:1904526	regulation of microtubule binding	0.0044922	4.81867201263777	7.06370984945264	0.3010300	-5.193765	0.9212428	0.4321507	null	FALSE
GO:1905255	regulation of RNA binding transcription factor activity	0.0044922	4.71215506052848	7.13601346761271	0.3010300	-6.937809	0.9249234	0.4321507	null	FALSE
GO:0048658	anther wall tapetum development	0.0853511	-5.10490503080009	3.43615568358556	1.3010300	-6.492437	0.9003442	0.4362705	null	FALSE
GO:0071218	cellular response to misfolded protein	0.1033197	5.73524373870449	1.40924907334138	1.3802112	-1.767598	0.8422972	0.4371512	null	FALSE
GO:0010942	positive regulation of cell death	0.1527335	1.96567881527884	6.34347157729983	1.5440680	-10.466450	0.8803558	0.4414794	null	FALSE
GO:0036371	protein localization to T-tubule	0.0314451	-4.89270090459492	-1.60941152547272	0.9030900	-16.616139	0.9229566	0.4440885	null	FALSE
GO:0051258	protein polymerization	0.1347648	-6.55700083218443	0.742557194712463	1.4913617	-1.407216	0.9405531	0.4473070	null	FALSE
GO:0032527	protein exit from endoplasmic reticulum	0.0359373	-5.08783748279616	-1.86544000450867	0.9542425	-11.527071	0.9153755	0.4479977	null	FALSE
GO:0001101	response to acid chemical	1.7923723	6.88591329805895	1.63752352304761	2.6020600	-5.560432	0.8775527	0.4485887	null	FALSE
GO:0007492	endoderm development	0.0134765	-5.59468306612694	4.2177185683379	0.6020600	-1.511509	0.9443035	0.4499787	null	FALSE
GO:0032232	negative regulation of actin filament bundle assembly	0.0314451	-0.769349130373502	6.04406029548038	0.9030900	-5.942017	0.8856321	0.4530513	null	FALSE
GO:0002213	defense response to insect	0.0943354	6.28852394104936	-1.31013367633977	1.3424227	-1.890326	0.8840647	0.4532505	null	FALSE
GO:0000914	phragmoplast assembly	0.0179686	-6.59622126152803	0.944688244277387	0.6989700	-3.761422	0.9483564	0.4564333	null	FALSE
GO:0002230	positive regulation of defense response to virus by host	0.0224608	-0.245234050566361	7.51667669726596	0.7781513	-23.982792	0.8926696	0.4583337	null	FALSE
GO:0008202	steroid metabolic process	0.4582004	-1.93488655079493	-5.23325158822241	2.0128372	-15.171247	0.8861342	0.4697108	null	FALSE
GO:0009314	response to radiation	3.1400207	7.32023988082316	0.353721717119712	2.8450980	-2.104823	0.8981983	0.4702593	null	FALSE
GO:0006898	receptor-mediated endocytosis	0.1976551	-5.09649711163541	-2.17508268904522	1.6532125	-4.752375	0.9219814	0.4736740	null	FALSE
GO:0010898	positive regulation of triglyceride catabolic process	0.1161545	1.58370694348763	6.45975858049821	1.4149733	-7.797760	0.8831707	0.4740009	null	FALSE
GO:0071398	cellular response to fatty acid	0.4402318	6.20286108357925	1.90998512885831	1.9956352	-23.828574	0.8246805	0.4760094	null	FALSE
GO:0009727	detection of ethylene stimulus	0.0134765	7.08604553913871	3.29881178865507	0.6020600	-18.408248	0.8957870	0.4765194	null	FALSE
GO:0010891	negative regulation of sequestering of triglyceride	0.0044922	-2.06317621633596	6.48254401367761	0.3010300	-7.797760	0.8870658	0.4769945	null	FALSE
GO:0019450	L-cysteine catabolic process to pyruvate	0.0044922	-0.401406838938424	-3.77677940112507	0.3010300	-7.982055	0.8792809	0.4780209	null	FALSE
GO:0071732	cellular response to nitric oxide	0.0179686	6.39146635576289	2.67200025676999	0.6989700	-13.088987	0.8549169	0.4811921	null	FALSE
GO:0019323	pentose catabolic process	0.0224608	0.743057690582198	-3.53928300047638	0.7781513	-2.936443	0.8996926	0.4826138	null	FALSE
GO:0048587	regulation of short-day photoperiodism,flowering	0.0494138	-0.0576886662159285	7.33191095911749	1.0791812	-2.668406	0.8927762	0.4852974	null	FALSE
GO:0051607	defense response to virus	0.2246081	6.30808038641994	-1.03461382703164	1.7075702	-2.216937	0.8763176	0.4865194	null	FALSE
GO:0070914	UV-damage excision repair	0.0089843	3.68569488081037	-1.77895713261538	0.4771213	-2.695172	0.8167975	0.4911276	null	FALSE
GO:0033292	T-tubule organization	0.0716381	-5.48082117996964	2.51395010370831	1.2041200	-16.616139	0.8893992	0.4928611	null	FALSE
GO:0016024	CDP-diacylglycerol biosynthetic process	0.0808589	-2.41444928557232	-6.23183092356525	1.2787536	-2.501440	0.8653858	0.5012011	null	FALSE
GO:0070462	plus-end specific microtubule depolymerization	0.0224608	-6.51750497089401	0.314196707760301	0.7781513	-11.321631	0.9351941	0.5018801	null	FALSE
GO:0097237	cellular response to toxic substance	0.8355420	6.09077825953709	1.69397953573186	2.2718416	-16.933808	0.8372070	0.5080142	null	FALSE
GO:0048312	intracellular distribution of mitochondria	0.0044922	-5.55423237742768	-0.65368470623996	0.3010300	-1.511515	0.9114772	0.5090434	null	FALSE
GO:0009451	RNA modification	1.4105386	1.19187900818397	-5.62877181957066	2.4983106	-24.705821	0.8733816	0.5091922	null	FALSE
GO:1901726	negative regulation of histone deacetylase activity	0.0494138	-0.306375380634578	6.07504167608919	1.0791812	-8.720248	0.8669664	0.5094696	null	FALSE
GO:0009992	cellular water homeostasis	0.0089843	-1.97356102168262	0.792240107198423	0.4771213	-1.388395	0.8598607	0.5104375	null	FALSE
GO:0018107	peptidyl-threonine phosphorylation	0.0628903	1.07969732479516	-6.91824031910513	1.1760913	-5.188056	0.9090496	0.5112764	null	FALSE
GO:0051090	regulation of DNA-binding transcription factor activity	0.0539059	1.99064438603892	7.03559524977744	1.1139434	-1.439312	0.8947475	0.5127988	null	FALSE
GO:0036309	protein localization to M-band	0.2713265	-5.11889515967296	-1.63515508299001	1.7853298	-16.616139	0.9088293	0.5168809	null	FALSE
GO:0001841	neural tube formation	0.0134765	-5.39499132063263	3.93888533338098	0.6020600	-6.892856	0.8946559	0.5181634	null	FALSE
GO:0006509	membrane protein ectodomain proteolysis	0.4761691	2.05638054985199	-6.72723662664161	2.0293838	-12.551149	0.9309484	0.5203722	null	FALSE
GO:0060776	simple leaf morphogenesis	0.0224608	-5.2306143158395	3.61912556982344	0.7781513	-2.956538	0.9063481	0.5240669	null	FALSE
GO:0060291	long-term synaptic potentiation	0.0044922	0.0399933671186771	3.50436142638617	0.3010300	-11.130410	0.8496862	0.5247898	null	FALSE
GO:0032212	positive regulation of telomere maintenance via telomerase	0.0044922	2.36298729048393	7.05949368122295	0.3010300	-1.707599	0.8989334	0.5293887	null	FALSE
GO:0019752	carboxylic acid metabolic process	4.3214591	-0.866651132819862	-4.36933164647271	2.9836263	-8.261766	0.8686713	0.5297900	null	FALSE
GO:0009914	hormone transport	0.4447240	-2.15776867550594	0.644061639284718	2.0000000	-12.890690	0.8141414	0.5303141	null	FALSE
GO:0005977	glycogen metabolic process	0.0853511	4.10545480002097	-5.87719652943841	1.3010300	-2.633283	0.9123031	0.5313878	null	FALSE
GO:2000280	regulation of root development	0.3593729	1.4521144418703	5.19197878514547	1.9084850	-50.486827	0.8979095	0.5325899	null	FALSE
GO:0033007	negative regulation of mast cell activation involved in immune response	0.0898432	-0.00995274740349879	6.38460507000456	1.3222193	-6.937809	0.8386662	0.5331877	null	FALSE
GO:0038018	Wnt receptor catabolic process	0.0044922	-0.46225662346836	4.38375948115376	0.3010300	-4.390571	0.8062319	0.5331877	null	FALSE
GO:0009638	phototropism	0.1123040	7.12515480666228	-0.691313884615911	1.4149733	-4.027267	0.8923521	0.5346332	null	FALSE
GO:0035518	histone H2A monoubiquitination	0.0089843	2.93767635530241	-6.83237959174479	0.4771213	-1.807329	0.9287301	0.5364766	null	FALSE
GO:0009617	response to bacterium	2.1113158	6.6202755394836	-0.655323603019893	2.6730209	-17.072972	0.8624122	0.5453319	null	FALSE
GO:1901684	arsenate ion transmembrane transport	0.0224608	-5.90044240693394	-1.88001104971749	0.7781513	-13.199874	0.9160531	0.5470253	null	FALSE
GO:0010016	shoot system morphogenesis	0.7097615	-5.15221465444581	3.78851886770003	2.2013971	-9.930844	0.8823966	0.5474395	null	FALSE
GO:0009961	response to 1-aminocyclopropane-1-carboxylic acid	0.0179686	7.05147758031483	3.02237991153248	0.6989700	-3.168515	0.8893669	0.5514906	null	FALSE
GO:0071731	response to nitric oxide	0.0269530	7.12409818651227	2.84002107082373	0.8450980	-3.940569	0.8903598	0.5514906	null	FALSE
GO:0044403	biological process involved in symbiotic interaction	0.4312475	7.13594702328671	-3.20991857066073	1.9867717	-9.564115	0.9469536	0.5582824	null	FALSE
GO:0002239	response to oomycetes	0.4177710	6.79242705596681	-1.04497738610039	1.9731279	-15.875443	0.8805188	0.5594759	null	FALSE
GO:0006696	ergosterol biosynthetic process	0.0479164	-1.4927544758104	-5.24255303244995	1.0413927	-3.585889	0.8411812	0.5602955	null	FALSE
GO:0006468	protein phosphorylation	5.0671578	1.2618536405523	-6.2981166664239	3.0526939	-60.750918	0.8722791	0.5616227	null	FALSE
GO:0048509	regulation of meristem development	0.2964826	1.6312326236267	5.29997547637945	1.8260748	-27.802412	0.8993770	0.5634440	null	FALSE
GO:1902265	abscisic acid homeostasis	0.0089843	-0.943895171222605	0.767780982161107	0.4771213	-3.059058	0.8975045	0.5661740	null	FALSE
GO:0099402	plant organ development	4.5236063	-4.99929937384197	3.94632708484448	3.0034605	-7.443147	0.8751553	0.5741508	null	FALSE
GO:0016099	monoterpenoid biosynthetic process	0.0044922	-3.43962054498304	-5.75013285310921	0.3010300	-44.932002	0.8910278	0.5751028	null	FALSE
GO:0009644	response to high light intensity	0.2785140	7.91292760717505	0.0202318918148168	1.7993405	-4.900573	0.9134787	0.5759002	null	FALSE
GO:0080003	thalianol metabolic process	0.0089843	-2.49870398082405	-5.29773093684947	0.4771213	-23.789992	0.8836863	0.5772455	null	FALSE
GO:0097167	circadian regulation of translation	0.0044922	-2.97850442466086	5.14419064970445	0.3010300	-3.599961	0.8699947	0.5780757	null	FALSE
GO:0098660	inorganic ion transmembrane transport	1.9810431	-5.51123614654023	-1.83725318121798	2.6454223	-10.737609	0.8891466	0.5817700	null	FALSE
GO:0007584	response to nutrient	0.0583981	6.83160840223629	0.695991552347004	1.1461280	-1.321440	0.8768802	0.5817840	null	FALSE
GO:0032508	DNA duplex unwinding	0.2919905	-6.31982640928202	0.850337250254752	1.8195439	-2.916109	0.9387474	0.5830189	null	FALSE
GO:0071229	cellular response to acid chemical	0.2740218	6.32505102875218	1.9947192646231	1.7923917	-18.646332	0.8483261	0.5845806	null	FALSE
GO:0007165	signal transduction	8.3913571	3.51336243163985	3.1297813891942	3.2716093	-130.964462	0.7241077	0.5893442	null	FALSE
GO:0071446	cellular response to salicylic acid stimulus	0.2605453	6.20585177331281	2.11637660112044	1.7708520	-20.847283	0.8325862	0.5943078	null	FALSE
GO:0009664	plant-type cell wall organization	0.6693320	-6.04876485338084	0.718799190675519	2.1760913	-11.167694	0.9312716	0.5956427	null	FALSE
GO:0009877	nodulation	0.0988275	-5.6060588144256	3.59382740314025	1.3617278	-4.911798	0.9248941	0.5966461	null	FALSE
GO:0036376	sodium ion export across plasma membrane	0.0554033	-5.76034923304888	-1.76931338462711	1.1139434	-11.218898	0.9064655	0.5981993	null	FALSE
GO:0003341	cilium movement	0.0059895	-5.59950098584421	-4.28959277304031	0.3010300	-13.254910	0.9521397	0.5985002	null	FALSE
GO:0046938	phytochelatin biosynthetic process	0.0134765	-0.610853943544822	-6.38896188051108	0.6020600	-5.445886	0.8924920	0.6011438	null	FALSE
GO:0042177	negative regulation of protein catabolic process	0.0134765	-1.43334457814101	6.25650893148941	0.6020600	-2.832164	0.8985487	0.6021055	null	FALSE
GO:0007263	nitric oxide mediated signal transduction	0.0089843	3.84059226583413	3.58907792926857	0.4771213	-6.441332	0.8335000	0.6046800	null	FALSE
GO:0006165	nucleoside diphosphate phosphorylation	0.3593729	-0.344272523185028	-5.47276606825899	1.9084850	-3.191198	0.8484215	0.6053333	null	FALSE
GO:1901255	nucleotide-excision repair involved in interstrand cross-link repair	0.0044922	3.25420147419142	-1.95413991019936	0.3010300	-1.955409	0.8344001	0.6058423	null	FALSE
GO:0044262	cellular carbohydrate metabolic process	2.1068236	4.51362009865021	-5.96529437415345	2.6720979	-2.920548	0.9089215	0.6073647	null	FALSE
GO:0070301	cellular response to hydrogen peroxide	0.0449216	5.8422891605753	1.64722133533402	1.0413927	-24.083938	0.8375083	0.6082701	null	FALSE
GO:0016045	detection of bacterium	0.0134765	7.1212463430226	-1.98280864442286	0.6020600	-13.150286	0.8940235	0.6121094	null	FALSE
GO:0098703	calcium ion import across plasma membrane	0.0170702	-3.43096884036599	-0.642953315195546	0.6020600	-11.130410	0.8068935	0.6124892	null	FALSE
GO:0010376	stomatal complex formation	0.0224608	-5.39245180723222	3.74590143164416	0.7781513	-1.310240	0.9002650	0.6165396	null	FALSE
GO:0046345	abscisic acid catabolic process	0.0269530	-1.92081251416311	-4.79445344966852	0.8450980	-40.691415	0.8282908	0.6194937	null	FALSE
GO:0080024	indolebutyric acid metabolic process	0.0224608	-0.144502102552849	-2.74711486468642	0.7781513	-12.490669	0.7838030	0.6227725	null	FALSE
GO:0010150	leaf senescence	0.5076142	-4.99786495079181	3.79659607478817	2.0569049	-3.287542	0.8924637	0.6244288	null	FALSE
GO:1903553	positive regulation of extracellular exosome assembly	0.0044922	3.03384066785417	6.96920589085536	0.3010300	-1.511515	0.9045147	0.6254462	null	FALSE
GO:0045926	negative regulation of growth	0.1751943	-0.950197856464302	5.6722009313277	1.6020600	-7.549587	0.8853934	0.6297772	null	FALSE
GO:0033473	indoleacetic acid conjugate metabolic process	0.0044922	-0.283677643414624	-2.94929445819359	0.3010300	-6.508933	0.8005614	0.6304322	null	FALSE
GO:1903507	negative regulation of nucleic acid-templated transcription	1.0556579	-0.116058250639565	5.69646711960811	2.3729120	-5.889535	0.8582344	0.6336059	null	FALSE
GO:0031640	killing of cells of other organism	1.3072189	7.17135666139803	-3.12712905638447	2.4653829	-1.511515	0.9135847	0.6338299	null	FALSE
GO:0000025	maltose catabolic process	0.0089843	4.62862272192714	-5.5084525279263	0.4771213	-6.402236	0.9145029	0.6340028	null	FALSE
GO:0060465	pharynx development	1.4053739	-5.08916489824228	4.11807838116437	2.4927604	-1.511515	0.8875713	0.6351702	null	FALSE
GO:0015700	arsenite transport	0.0224608	-5.91548376545276	-2.04550379084486	0.7781513	-15.521384	0.9357928	0.6364426	null	FALSE
GO:0031347	regulation of defense response	1.2308522	0.363749239306276	6.06897593135024	2.4393327	-12.817341	0.8607194	0.6384662	null	FALSE
GO:0003283	atrial septum development	1.6401201	-4.96925929643577	4.08078304241428	3.2564772	-3.375052	0.8687517	0.6408854	null	FALSE
GO:0042631	cellular response to water deprivation	0.1707021	5.98819544882573	0.977361088029413	1.5910646	-8.324906	0.7858586	0.6436302	null	FALSE
GO:0010106	cellular response to iron ion starvation	0.0359373	3.82150935429393	0.865804815436922	0.9542425	-2.715632	0.7544693	0.6452536	null	FALSE
GO:1905034	regulation of antifungal innate immune response	0.0089843	-0.498216810254046	7.65405612131188	0.4771213	-6.763737	0.8950847	0.6459136	null	FALSE
GO:0010105	negative regulation of ethylene-activated signaling pathway	0.0898432	-0.456359225028234	6.2888053782358	1.3222193	-15.525570	0.8390935	0.6505621	null	FALSE
GO:1902290	positive regulation of defense response to oomycetes	0.0449216	0.657296785816245	7.05477289817112	1.0413927	-12.360237	0.8686328	0.6512180	null	FALSE
GO:0044255	cellular lipid metabolic process	3.4050582	-2.85860492805447	-5.95470619955239	2.8802418	-3.248190	0.8748410	0.6525364	null	FALSE
GO:0072498	embryonic skeletal joint development	1.8732312	-5.0887277284664	4.01657478354037	2.6211763	-1.511515	0.8845939	0.6529264	null	FALSE
GO:0051513	regulation of monopolar cell growth	0.0224608	2.69650647675226	6.41802510240082	0.7781513	-1.473899	0.8994634	0.6532683	null	FALSE
GO:0042742	defense response to bacterium	1.6216702	6.316401436975	-0.62755514354493	2.5587086	-14.961942	0.8483041	0.6545694	null	FALSE
GO:0012502	induction of programmed cell death	0.0044922	2.99911413017345	7.19037016874442	0.3010300	-5.115042	0.9034924	0.6549617	null	FALSE
GO:1902042	negative regulation of extrinsic apoptotic signaling pathway via death domain receptors	0.0044922	-0.642827900001118	6.7026147430444	0.3010300	-5.153496	0.8607304	0.6549617	null	FALSE
GO:0009852	auxin catabolic process	0.0089843	-0.561137570692578	-0.295630396297205	0.4771213	-9.060693	0.8366526	0.6550946	null	FALSE
GO:0000304	response to singlet oxygen	0.0583981	6.97245177414905	1.84720973685903	1.1461280	-13.389297	0.8782887	0.6554547	null	FALSE
GO:2000026	regulation of multicellular organismal development	1.5677643	1.15107116292101	5.06926344495991	2.5440680	-13.816111	0.8549052	0.6593517	null	FALSE
GO:0046482	para-aminobenzoic acid metabolic process	0.0179686	-0.209401819959143	-4.61950550864075	0.6989700	-17.998248	0.8763834	0.6615462	null	FALSE
GO:1901599	(-)-pinoresinol biosynthetic process	0.0089843	-1.13743632591425	-4.82504441724422	0.4771213	-2.589659	0.8653362	0.6615462	null	FALSE
GO:0030150	protein import into mitochondrial matrix	0.1257805	-5.50846525542476	-0.888766668600337	1.4623980	-7.293749	0.8749276	0.6622637	null	FALSE
GO:0032870	cellular response to hormone stimulus	4.2316158	6.18783495332526	1.46347233377747	2.9745117	-14.968531	0.8018501	0.6623081	null	FALSE
GO:0010930	negative regulation of auxin mediated signaling pathway	0.0134765	-0.73452956954826	6.53091657141941	0.6020600	-4.968536	0.8606039	0.6682671	null	FALSE
GO:0006654	phosphatidic acid biosynthetic process	0.0269530	-2.54867959846544	-6.20695829914329	0.8450980	-1.576801	0.8746047	0.6687375	null	FALSE
GO:0045338	farnesyl diphosphate metabolic process	0.0898432	-2.81450595811813	-6.1739308670992	1.3222193	-28.998426	0.8694725	0.6735153	null	FALSE
GO:0009801	cinnamic acid ester metabolic process	0.0089843	-1.84648705973755	-4.10477860986303	0.4771213	-13.089991	0.9040753	0.6748672	null	FALSE
GO:1903711	spermidine transmembrane transport	0.2061403	-5.55346910659661	-1.99567500277708	1.6627578	-6.503290	0.8993891	0.6759740	null	FALSE
GO:0071368	cellular response to cytokinin stimulus	0.3593729	6.03452324232249	1.9859488628555	1.9084850	-11.780061	0.8400378	0.6812564	null	FALSE
GO:0050829	defense response to Gram-negative bacterium	0.0988275	6.39778238014535	-1.27042828702017	1.3617278	-5.405397	0.8783485	0.6840535	null	FALSE
GO:1900449	regulation of glutamate receptor signaling pathway	0.1735903	0.283065071650957	6.51475502430194	1.5682017	-5.153496	0.8598522	0.6858401	null	FALSE
GO:0010310	regulation of hydrogen peroxide metabolic process	0.0539059	1.55873532863189	7.3427058641624	1.1139434	-1.409169	0.9122973	0.6872518	null	FALSE
GO:0030435	sporulation resulting in formation of a cellular spore	0.1134757	-5.52813301989736	3.46762730924461	1.3802112	-3.232252	0.8961892	0.6894313	null	FALSE
GO:0010030	positive regulation of seed germination	0.0898432	2.24274743191681	6.06708187260214	1.3222193	-13.622275	0.8600820	0.6895163	null	FALSE
GO:0005983	starch catabolic process	0.0763667	3.74135488194417	-5.52256680775893	1.2552725	-5.865772	0.8948552	0.6912926	null	FALSE
GO:0071266	‘de novo’ L-methionine biosynthetic process	0.0044922	-1.33110167072378	-5.83109623708845	0.3010300	-7.778089	0.8782424	0.6914940	null	FALSE
GO:0071281	cellular response to iron ion	0.0089843	6.34818128593247	2.87340191519986	0.4771213	-11.562767	0.8728597	0.6952859	null	FALSE

[1] “only_in_posi_GO.txt”

TermID	Name	Frequency	PlotX	PlotY	LogSize	Value	Uniqueness	Dispensability	Representative	Eliminated
GO:0005983	starch catabolic process	0.0763667	-3.8526345	-5.3582501	1.255273	-2.055820	0.9140657	0.0000000	null	FALSE
GO:0030174	regulation of DNA-dependent DNA replication initiation	0.0179686	0.3882463	5.5503857	0.698970	-1.307768	0.9472392	0.0000000	null	FALSE
GO:0046686	response to cadmium ion	0.3054670	4.8793689	-3.8917909	1.838849	-1.754551	0.8683807	0.0000000	null	FALSE
GO:0034721	histone H3-K4 demethylation,trimethyl-H3-K4-specific	0.0404295	-5.4565131	-0.5614363	1.000000	-1.884385	0.9145322	0.1526367	null	FALSE
GO:0071333	cellular response to glucose stimulus	0.0718746	5.2522276	-1.1200076	1.230449	-1.582738	0.7989313	0.2725221	null	FALSE

[1] “only_in_zmar_GO.txt”

TermID	Name	Frequency	PlotX	PlotY	LogSize	Value	Uniqueness	Dispensability	Representative	Eliminated
GO:0010157	response to chlorate	0.0044922	4.11166156527779	4.31918249320817	0.3010300	-5.513515	0.9765257	0.0000000	null	FALSE
GO:0015770	sucrose transport	0.0988275	-2.2016782566231	-7.3140881330079	1.3617278	-1.318982	0.9441763	0.0000000	null	FALSE
GO:0048281	inflorescence morphogenesis	0.0134765	-6.16165229809352	2.02520398971639	0.6020600	-4.588824	0.9216674	0.0000000	null	FALSE
GO:0051603	proteolysis involved in cellular protein catabolic process	2.6458829	5.07106319578381	-3.54151281450573	2.7708520	-23.445501	0.7934847	0.0000000	null	FALSE
GO:0032197	transposition,RNA-mediated	0.0044922	6.44811274770786	2.48134468870806	0.3010300	-2.708915	0.9734785	0.0243997	null	FALSE
GO:0090156	cellular sphingolipid homeostasis	0.0134765	-0.722090796116994	-0.197392942316222	0.6020600	-4.494330	0.9214548	0.0265366	null	FALSE
GO:0046785	microtubule polymerization	0.0673824	-5.47507793681507	-3.53801938106731	1.2041200	-13.774183	0.8741245	0.0304424	null	FALSE
GO:1901332	negative regulation of lateral root development	0.0314451	-3.09341400879405	5.28725875393739	0.9030900	-2.847257	0.9454833	0.0999311	null	FALSE
GO:0010286	heat acclimation	0.2650375	1.54013586306071	5.56095248673332	1.7781513	-2.016484	0.9263497	0.1180921	null	FALSE
GO:0080156	mitochondrial mRNA modification	0.1347648	2.95633453104996	-6.54953070307069	1.4913617	-7.414447	0.8668707	0.1671223	null	FALSE
GO:0006537	glutamate biosynthetic process	0.0179686	5.02132895305333	-0.876854500575888	0.6989700	-1.818101	0.9002232	0.1746337	null	FALSE
GO:0048194	Golgi vesicle budding	0.0179686	-4.1551378651847	-5.15187863411674	0.6989700	-1.775108	0.8332491	0.2966091	null	FALSE
GO:1990019	protein storage vacuole organization	0.0314451	-5.65831156623758	-4.30351870776521	0.9030900	-8.591400	0.8788757	0.3074104	null	FALSE
GO:0006278	RNA-dependent DNA biosynthetic process	0.2605453	3.92046919449429	-4.67258015296427	1.7708520	-2.761258	0.8356628	0.3399747	null	FALSE
GO:0090709	regulation of timing of plant organ formation	0.0089843	-2.6409687488847	5.77124226143112	0.4771213	-1.857388	0.9468768	0.3711372	null	FALSE
GO:0032989	cellular component morphogenesis	0.2156237	-5.80773660082054	-1.10976745792843	1.6901961	-4.508650	0.7980114	0.4158062	null	FALSE
GO:0090305	nucleic acid phosphodiester bond hydrolysis	1.6171780	3.60972078930628	-5.740638654047	2.5575072	-1.818070	0.8442740	0.4238293	null	FALSE
GO:0006624	vacuolar protein processing	0.0359373	6.00737403466569	-2.96221362886087	0.9542425	-9.895786	0.8501799	0.4917335	null	FALSE
GO:0010090	trichome morphogenesis	0.2830062	-6.48656191500357	1.51849345824057	1.8061800	-4.097280	0.8796241	0.5409970	null	FALSE
GO:0045332	phospholipid translocation	0.0583981	-3.3672464490205	-4.0414370913363	1.1461280	-1.546385	0.7802830	0.5429416	null	FALSE
GO:0009408	response to heat	1.1230403	1.8703090670183	5.31097081133157	2.3996737	-1.548177	0.9252721	0.6700248	null	FALSE

[1] “only_in_zmuel_GO.txt”

TermID	Name	Frequency	PlotX	PlotY	LogSize	Value	Uniqueness	Dispensability	Representative	Eliminated
GO:0010222	stem vascular tissue pattern formation	0.0269530	-0.563447772275809	5.87098322901602	0.8450980	-5.047945	0.8692095	0.0000000	null	FALSE
GO:0040007	growth	1.7025291	-4.28255529182375	4.46801463291539	2.5797836	-4.373448	1.0000000	0.0000000	null	FALSE
GO:0043007	maintenance of rDNA	0.0134765	-4.76609452875595	-5.2590524758383	0.6020600	-3.318770	0.8595533	0.0000000	null	FALSE
GO:0090284	positive regulation of protein glycosylation in Golgi	0.3503886	5.51055427570417	-1.54135332501225	1.8976271	-5.506616	0.7602859	0.0000000	null	FALSE
GO:0046459	short-chain fatty acid metabolic process	0.0134765	-6.49451546385567	2.12994311564573	0.6020600	-1.740640	0.9820174	0.0647135	null	FALSE
GO:2001240	negative regulation of extrinsic apoptotic signaling pathway in absence of ligand	0.0044922	3.30717541372873	-5.10018653078686	0.3010300	-2.928272	0.8010540	0.1398481	null	FALSE
GO:1900049	regulation of histone exchange	0.0089843	5.95071721549437	2.09056136675837	0.4771213	-4.140205	0.8866402	0.1463228	null	FALSE
GO:2000114	regulation of establishment of cell polarity	0.0224608	3.08846899700244	1.32151758281914	0.7781513	-3.856587	0.8804434	0.1558620	null	FALSE
GO:0008347	glial cell migration	0.0044922	0.975236256060151	6.12331428559806	0.3010300	-4.650340	0.8597621	0.2230397	null	FALSE
GO:0080119	ER body organization	0.0269530	-5.46086267537247	-3.23649443397829	0.8450980	-2.146026	0.8761290	0.2757630	null	FALSE
GO:0007030	Golgi organization	0.1931629	-5.00462316000622	-4.08997762867601	1.6434527	-1.799156	0.8646678	0.3265117	null	FALSE
GO:0034260	negative regulation of GTPase activity	0.5039777	2.68944513059168	-2.70275476369955	2.0530784	-1.793183	0.7678298	0.3612841	null	FALSE
GO:0006336	DNA replication-independent chromatin assembly	0.0404295	-4.15398523924773	-5.40249987004598	1.0000000	-1.395115	0.8581688	0.4336933	null	FALSE
GO:0090303	positive regulation of wound healing	1.1320246	4.71859689002595	-3.5126865402301	2.4031205	-4.387055	0.7462134	0.5237917	null	FALSE
GO:0046328	regulation of JNK cascade	0.0185302	4.28236042363007	-5.2755297531507	0.6989700	-2.672143	0.8018145	0.6029437	null	FALSE

[1] “only_seagrasses_GO.txt”

TermID	Name	Frequency	PlotX	PlotY	LogSize	Value	Uniqueness	Dispensability	Representative	Eliminated
GO:0010022	meristem determinacy	0.1167962	-4.7088142153657	-4.43837287951032	1.4313638	-2.675579	0.8822107	0.0000000	null	FALSE
GO:0050982	detection of mechanical stimulus	0.0134765	-5.23562600824086	3.73139105976554	0.6020600	-5.431629	0.9623703	0.0000000	null	FALSE
GO:0051603	proteolysis involved in cellular protein catabolic process	2.6458829	4.88178831296245	-4.96986050147995	2.7708520	-11.456833	0.8231088	0.0000000	null	FALSE
GO:1900049	regulation of histone exchange	0.0089843	-0.913847053924933	6.45560329410688	0.4771213	-5.042366	0.9156042	0.0000000	null	FALSE
GO:0032197	transposition,RNA-mediated	0.0044922	-7.41545399228281	0.391459820191346	0.3010300	-9.168511	0.9797437	0.0243997	null	FALSE
GO:0033298	contractile vacuole organization	0.0898432	0.220600422535116	-6.27027019677072	1.3222193	-5.583611	0.8741731	0.0312650	null	FALSE
GO:0033275	actin-myosin filament sliding	0.1033197	-5.84579393161654	0.766292498469521	1.3802112	-6.682353	0.8518190	0.0316809	null	FALSE
GO:1902466	positive regulation of histone H3-K27 trimethylation	0.0089843	2.17862534505974	4.8190197442204	0.4771213	-4.579819	0.8596224	0.1175562	null	FALSE
GO:0051591	response to cAMP	0.3255457	-4.26144972096448	5.34545066226927	1.8633229	-4.509703	0.9729961	0.1286131	null	FALSE
GO:0097193	intrinsic apoptotic signaling pathway	0.2467993	-1.2782738767649	3.91723686189139	1.7403627	-3.003236	0.8667449	0.1604888	null	FALSE
GO:1904872	regulation of telomerase RNA localization to Cajal body	0.3049731	4.35341507254303	4.89779940851176	1.6434527	-1.978326	0.9173185	0.1642114	null	FALSE
GO:0043086	negative regulation of catalytic activity	1.1410089	4.7528803462001	3.80572841859977	2.4065402	-1.351735	0.9001337	0.1652546	null	FALSE
GO:0006278	RNA-dependent DNA biosynthetic process	0.2605453	5.86306143628694	-2.625422376621	1.7708520	-9.577934	0.8559526	0.2387877	null	FALSE
GO:0006971	hypotonic response	0.0134765	-5.7772287213171	3.17554481445418	0.6020600	-2.372108	0.9720130	0.2465384	null	FALSE
GO:0031154	culmination involved in sorocarp development	0.0404295	-3.64176967562245	-5.8122808688147	1.0000000	-1.309504	0.9274572	0.2565030	null	FALSE
GO:0016131	brassinosteroid metabolic process	0.1482413	5.86713485895276	0.365724847799378	1.5314789	-4.909247	0.8279495	0.2739357	null	FALSE
GO:0032060	bleb assembly	0.2650375	0.141076995539704	-6.91868075463543	0.6989700	-5.583611	0.7438491	0.2823551	null	FALSE
GO:0032989	cellular component morphogenesis	0.2156237	-2.18050522667794	-4.9576134894933	1.6901961	-3.724531	0.7843404	0.3028309	null	FALSE
GO:0048578	positive regulation of long-day photoperiodism,flowering	0.0359373	1.75338670884981	5.61149373411496	0.9542425	-3.385409	0.8703649	0.3077731	null	FALSE
GO:0097242	amyloid-beta clearance	0.9159091	-5.8533829146441	-2.60011083882321	2.3117539	-1.718349	0.9372783	0.3266559	null	FALSE
GO:2001240	negative regulation of extrinsic apoptotic signaling pathway in absence of ligand	0.0044922	0.642850478578048	3.54248622024944	0.3010300	-1.641177	0.9048595	0.3625130	null	FALSE
GO:0010992	ubiquitin recycling	0.0044922	7.22537426761855	2.79199406315397	0.3010300	-1.718349	0.9144109	0.3658745	null	FALSE
GO:0051707	response to other organism	6.1812138	-4.55567047852117	4.20407797134144	3.1389339	-2.284036	0.9584055	0.3914002	null	FALSE
GO:0090501	RNA phosphodiester bond hydrolysis	0.8804636	5.38373337057937	-2.89930511474118	2.2944662	-6.648430	0.8623412	0.3997076	null	FALSE
GO:0080156	mitochondrial mRNA modification	0.1347648	4.89641299052905	-3.24847896308863	1.4913617	-3.221374	0.8625111	0.4346267	null	FALSE
GO:0006468	protein phosphorylation	5.0671578	4.46640892784424	-4.90581510322455	3.0526939	-3.226314	0.8657436	0.4388141	null	FALSE
GO:0090701	specification of plant organ identity	0.0583981	-4.20156127137747	-3.74454321382841	1.1461280	-2.713400	0.8814304	0.4606874	null	FALSE
GO:0051127	positive regulation of actin nucleation	0.0224608	0.723202333683879	6.11924404070086	0.7781513	-1.905381	0.8789310	0.4727066	null	FALSE
GO:0043007	maintenance of rDNA	0.0134765	2.68526952861377	-3.81287472034624	0.6020600	-6.455202	0.7931148	0.4859577	null	FALSE
GO:0016926	protein desumoylation	0.0359373	4.08235794922677	-6.17276199748594	0.9542425	-1.543029	0.8979943	0.4917335	null	FALSE
GO:0009048	dosage compensation by inactivation of X chromosome	0.4941377	1.1230954561853	0.263392475035361	2.0453230	-2.792735	0.7614649	0.5100284	null	FALSE
GO:0010815	bradykinin catabolic process	0.0359373	5.66611615511259	-4.36635273299491	0.9542425	-1.718349	0.8737350	0.5423309	null	FALSE
GO:0071048	nuclear retention of unspliced pre-mRNA at the site of transcription	0.0224608	3.91467626701701	-1.10218344706374	0.7781513	-1.532452	0.7576435	0.5428672	null	FALSE
GO:0010090	trichome morphogenesis	0.2830062	-3.81405915360717	-4.9080697583129	1.8061800	-2.336224	0.8509741	0.5489694	null	FALSE
GO:0051555	flavonol biosynthetic process	0.0808589	7.79847379852878	0.320574842810472	1.2787536	-2.102840	0.9341821	0.6044851	null	FALSE
GO:0001932	regulation of protein phosphorylation	0.4716769	2.55372208793227	3.3667082870331	2.0253059	-3.934885	0.8569219	0.6309617	null	FALSE
GO:0010222	stem vascular tissue pattern formation	0.0269530	-4.66982571960877	-3.44086690579694	0.8450980	-1.487551	0.9003958	0.6358398	null	FALSE
GO:0048576	positive regulation of short-day photoperiodism,flowering	0.0044922	1.82756434403651	6.23379841045324	0.3010300	-1.364131	0.8820965	0.6596159	null	FALSE
GO:0010492	maintenance of shoot apical meristem identity	0.0898432	-4.53333411374642	-4.59735128077621	1.3222193	-1.433920	0.8838636	0.6967210	null	FALSE

Venn diagram GO overlaps

Let’s also check which GO terms overlap between the 4 seagrasses!

Let’s have a look at all of these plots. Manually zooming in leads to ggrepel reloading labels, so on the small scale a lot of these plots don’t have labels.

for(i in names(plot_list)) {
  file_name = paste('output/',  i, '.png', sep='')
  
  cowplot::save_plot(file_name, plot_list[[i]], base_height=8)
  
}

How many shared lost GO-terms are there? Hopefully, all four species will have lost the most GO-terms.

a <- list(`P. australis` = results_list$missing_posi_vs_all_GO.txt$Name,
          `A. antarctica` = results_list$missing_amphi_vs_all_GO.txt$Name,
          `Z. marina` = results_list$missing_zmar_vs_all_GO.txt$Name,
          `Z. muelleri` = results_list$missing_zmuel_vs_all_GO.txt$Name,
          `A. thaliana` = results_list$missing_arabidopsis_vs_all_GO.txt$Name)

a_go_ids <- list(`P. australis` = results_list$missing_posi_vs_all_GO.txt$TermID,
          `A. antarctica` = results_list$missing_amphi_vs_all_GO.txt$TermID,
          `Z. marina` = results_list$missing_zmar_vs_all_GO.txt$TermID,
          `Z. muelleri` = results_list$missing_zmuel_vs_all_GO.txt$TermID,
          `A. thaliana` = results_list$missing_arabidopsis_vs_all_GO.txt$TermID)

plot(euler(a), 
     quantities = TRUE,
     fill = rev(wes_palette("Zissou1", 15, type = 'continuous')),
    alpha = 0.5,
     labels = list(font = 4))

upset(fromList(a), order.by='freq', )

a_no_ara <- list(`P. australis` = results_list$missing_posi_vs_all_GO.txt$Name,
          `A. antarctica` = results_list$missing_amphi_vs_all_GO.txt$Name,
          `Z. marina` = results_list$missing_zmar_vs_all_GO.txt$Name,
          `Z. muelleri` = results_list$missing_zmuel_vs_all_GO.txt$Name)

What are the shared GO-terms in seagrasses, WITHOUT the Ara loss??

setdiff(Reduce(intersect, a_no_ara), Reduce(intersect, a)) %>% enframe() %>% writexl::write_xlsx('./data/shared_lost_genes.xlsx')

What if we remove Posidonia?

b <- list(`A. antarctica` = results_list$missing_amphi_vs_all_GO.txt$Name,
          `Z. marina` = results_list$missing_zmar_vs_all_GO.txt$Name,
          `Z. muelleri` = results_list$missing_zmuel_vs_all_GO.txt$Name)
intersections <- Reduce(intersect, b)
intersections[grepl('ethylene', intersections)]

[1] "jasmonic acid and ethylene-dependent systemic resistance,ethylene mediated signaling pathway"
[2] "regulation of ethylene-activated signaling pathway"                                          

OK we need a big list of all GO-terms here - which GO-term is lost in which species. That will be a supplementary table.

all_species <- c("P. australis","A. antarctica","Z. marina","Z. muelleri", 'A. thaliana')  
all_go_terms <- Reduce(union, a)
all_go_ids <- Reduce(union, a_go_ids)
results_d <- data.frame('GOID' = character(),
                        'GO' = character(),
                        'P. australis' = character(),
                        'A. antarctica' = character(),
                        'Z. marina' = character(),
                        'Z. muelleri' = character(),
                        'A. thaliana' = character())


for (index in seq_along(all_go_terms)){
  go <- all_go_terms[index]
  go_id <- all_go_ids[index]
  specs <- c()
  for (species in names(a)) {
    if ( length(a[[species]][grep(paste('^', go, '$', sep=''), a[[species]])]) > 0 ) {
      specs <- c(specs, species)
    }
  }
  
  results_d[index,] <- c(go_id, go, gsub('FALSE', 'Present', gsub('TRUE', 'Lost', all_species %in% specs)))
}

writexl::write_xlsx(results_d, 'data/Lost_GO_terms_in_five_species.xlsx')

after filtering for plant-specific GO-terms

We will use the GO-terms that are plant-specific as identified by the GOMAP paper. See https://github.com/wkpalan/GOMAP-maize-analysis/blob/main/6.plantSpecific/1.getSppSpecific.R or https://plantmethods.biomedcentral.com/articles/10.1186/s13007-021-00754-1

go_plant <- read_tsv('https://raw.githubusercontent.com/wkpalan/GOMAP-maize-analysis/main/data/go/speciesSpecificGOTerms.txt')

Rows: 45031 Columns: 5

-- Column specification --------------------------------------------------------
Delimiter: "\t"
chr (1): GOterm
dbl (4): NCBITaxon:10090, NCBITaxon:33090, NCBITaxon:3702, NCBITaxon:40674

i Use `spec()` to retrieve the full column specification for this data.
i Specify the column types or set `show_col_types = FALSE` to quiet this message.

# taxon 33090 is Viridiplantae
plantSpecificGO <- go_plant %>% dplyr::filter(`NCBITaxon:33090`==1) %>% pull(GOterm)
plantSpecificGO <- c(plantSpecificGO,c("GO:0005575","GO:0008150","GO:0003674"))

results_d %>% filter(GOID %in% plantSpecificGO) %>% writexl::write_xlsx('data/Lost_GO_terms_in_five_species.PlantSpecific.xlsx')

Now let’s redo the Venn diagram with those filtered GO-terms

filters <- lapply(a_go_ids, function(ch) ch %in% plantSpecificGO)

newa <- list()
for (species in names(filters)) {
  before <- a[[species]]
  after <- before[filters[[species]]]
  newa[[species]] <- after
}

plot(euler(newa), 
     quantities = TRUE,
     fill = rev(wes_palette("Zissou1", 15, type = 'continuous')),
    alpha = 0.5,
     labels = list(font = 4))

Not much difference?

Session information

sessionInfo()

R version 4.1.0 (2021-05-18)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19042)

Matrix products: default

locale:
[1] LC_COLLATE=English_Australia.1252  LC_CTYPE=English_Australia.1252   
[3] LC_MONETARY=English_Australia.1252 LC_NUMERIC=C                      
[5] LC_TIME=English_Australia.1252    

attached base packages:
[1] stats4    parallel  stats     graphics  grDevices utils     datasets 
[8] methods   base     

other attached packages:
 [1] rrvgo_1.4.4          UpSetR_1.4.0         eulerr_6.1.1        
 [4] ggrepel_0.9.1        stringi_1.7.5        httr_1.4.2          
 [7] wesanderson_0.3.6    rvest_1.0.2          forcats_0.5.1       
[10] stringr_1.4.0        dplyr_1.0.7          purrr_0.3.4         
[13] readr_2.0.2          tidyr_1.1.4          tibble_3.1.5        
[16] ggplot2_3.3.5        tidyverse_1.3.1      topGO_2.44.0        
[19] SparseM_1.81         GO.db_3.13.0         AnnotationDbi_1.54.1
[22] IRanges_2.26.0       S4Vectors_0.30.2     Biobase_2.52.0      
[25] graph_1.70.0         BiocGenerics_0.38.0  workflowr_1.6.2     

loaded via a namespace (and not attached):
  [1] colorspace_2.0-2       ellipsis_0.3.2         rprojroot_2.0.2       
  [4] XVector_0.32.0         fs_1.5.0               rstudioapi_0.13       
  [7] farver_2.1.0           bit64_4.0.5            fansi_0.5.0           
 [10] lubridate_1.8.0        xml2_1.3.2             cachem_1.0.6          
 [13] GOSemSim_2.18.1        knitr_1.36             polyclip_1.10-0       
 [16] jsonlite_1.7.2         broom_0.7.9            gridBase_0.4-7        
 [19] dbplyr_2.1.1           png_0.1-7              pheatmap_1.0.12       
 [22] shiny_1.7.1            compiler_4.1.0         backports_1.2.1       
 [25] assertthat_0.2.1       fastmap_1.1.0          cli_3.0.1             
 [28] later_1.3.0            htmltools_0.5.2        tools_4.1.0           
 [31] igraph_1.2.7           NLP_0.2-1              gtable_0.3.0          
 [34] glue_1.4.2             GenomeInfoDbData_1.2.6 Rcpp_1.0.7            
 [37] slam_0.1-48            cellranger_1.1.0       jquerylib_0.1.4       
 [40] vctrs_0.3.8            Biostrings_2.60.2      writexl_1.4.0         
 [43] polylabelr_0.2.0       xfun_0.27              mime_0.12             
 [46] lifecycle_1.0.1        zlibbioc_1.38.0        scales_1.1.1          
 [49] treemap_2.4-3          vroom_1.5.5            hms_1.1.1             
 [52] promises_1.2.0.1       RColorBrewer_1.1-2     yaml_2.2.1            
 [55] curl_4.3.2             memoise_2.0.0          gridExtra_2.3         
 [58] sass_0.4.0             RSQLite_2.2.8          highr_0.9             
 [61] GenomeInfoDb_1.28.4    rlang_0.4.12           pkgconfig_2.0.3       
 [64] matrixStats_0.61.0     bitops_1.0-7           evaluate_0.14         
 [67] lattice_0.20-44        labeling_0.4.2         cowplot_1.1.1         
 [70] bit_4.0.4              tidyselect_1.1.1       plyr_1.8.6            
 [73] magrittr_2.0.1         R6_2.5.1               generics_0.1.1        
 [76] DBI_1.1.1              pillar_1.6.4           haven_2.4.3           
 [79] whisker_0.4            withr_2.4.2            KEGGREST_1.32.0       
 [82] RCurl_1.98-1.5         modelr_0.1.8           crayon_1.4.1          
 [85] wordcloud_2.6          utf8_1.2.2             tzdb_0.1.2            
 [88] rmarkdown_2.11         grid_4.1.0             readxl_1.3.1          
 [91] data.table_1.14.2      blob_1.2.2             git2r_0.28.0          
 [94] reprex_2.0.1           digest_0.6.28          xtable_1.8-4          
 [97] tm_0.7-8               httpuv_1.6.3           munsell_0.5.0         
[100] bslib_0.3.1