Last updated: 2019-09-13

Checks: 2 0

Knit directory: ~/Box/RProjects/pair_con_select/

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Ignored files:
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    Ignored:    .Rproj.user/
    Ignored:    analysis/.Rhistory
    Ignored:    analysis/.Rproj.user/
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    Untracked:  code/mut_excl_genes_datapoints.R
    Untracked:  code/mut_excl_genes_generator.R
    Untracked:  code/quadratic_solver.R
    Untracked:  code/simresults_generator.R
    Untracked:  data/ALKATI_ccle.csv
    Untracked:  data/All_Data_V2.csv
    Untracked:  data/CCLE_NP24.2009_Drug_data_2015.02.24.csv
    Untracked:  data/alkati_growthcurvedata.csv
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    Untracked:  data/alkati_melanoma_vemurafenib_figure_data.csv
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    Untracked:  data/skmel28_sos1_mekq56p_vemurafenib.csv
    Untracked:  data/tcga_brca_expression/
    Untracked:  data/tcga_luad_expression/
    Untracked:  data/tcga_skcm_expression/
    Untracked:  docs/figure/Filteranalysis.Rmd/
    Untracked:  output/ alkati_subsamplesize_orval_fig1c.pdf
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    Untracked:  output/all_data_luad.csv
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    Untracked:  output/all_data_skcm.csv
    Untracked:  output/baf3_alkati_figure_deltaadjusted_doublings.pdf
    Untracked:  output/baf3_barplot.pdf
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    Untracked:  output/suppfig1..pdf
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Unstaged changes:
    Modified:   analysis/ALKATI_Filter_Cutoff_Analysis.Rmd
    Modified:   analysis/ALK_ExonImbalance_SKCM_Analysis.Rmd
    Modified:   analysis/TCGA_luad_data_parser.Rmd
    Modified:   analysis/alkati_cell_line_tae684_response.Rmd
    Modified:   analysis/baf3_alkati_transformations.Rmd
    Modified:   analysis/pairwise_comparisons_conditional_selection_simulated_cohorts.Rmd
    Deleted:    analysis/practice.Rmd
    Modified:   analysis/tcga_luad_data_parser_egfr.Rmd

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File Version Author Date Message
Rmd ee86dfc haiderinam 2019-09-13 Updated and Resized Images for Thumbnails #3
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Rmd 2842c90 haiderinam 2019-09-13 Updated Images for Thumbnails #3
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Rmd fbff709 haiderinam 2019-09-13 Updated Images for Thumbnails #2
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Rmd d7b36c1 haiderinam 2019-09-13 Updated Images for Thumbnails
html caa231e haiderinam 2019-03-08 Build site.
Rmd 5477bb6 haiderinam 2019-03-08 Added page for analysis on performing pairwise comparisons in
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Rmd 79bf9a6 haiderinam 2019-03-06 Added CCLE analyses
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html 755da19 haiderinam 2019-02-20 Build site.
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Rmd ead5e6b haiderinam 2019-02-20 Fixed link for EGFR Expression Analysis
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Rmd 6fec622 haiderinam 2019-02-20 Added EGFR Expression Analysis
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Rmd 66533e8 haiderinam 2019-02-20 Added images attempt #2
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Rmd efc8178 haiderinam 2019-02-19 Added images and descriptions
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html 08e9438 haiderinam 2019-02-17 Build site.
Rmd 33e1acb haiderinam 2019-02-17 Published Analysis on ALK expression levels #3
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Rmd 4c89be3 haiderinam 2019-02-11 Publish the initial files for myproject
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Rmd 644865d haiderinam 2019-02-11 Start workflowr project.

Pairwise Comparisons of Conditional Selection

Click here to be redirected to the github page that contains all my data.

What is in each directory:

  • Data: contains data downloaded from internet
  • Output: contains data that your code makes
  • Analysis: contains your Rmarkdown files that are converted to PDFs
  • Code: contains .R files that are functions that your Rmd files in the analysis folder goes off of.