Last updated: 2020-12-28

Checks: 2 0

Knit directory: meta-liver/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.


Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version bf1292e. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    analysis/human-diehl-nafld_cache/
    Ignored:    analysis/human-hampe13-nash_cache/
    Ignored:    analysis/human-hampe14-misc_cache/
    Ignored:    analysis/human-hoang-nafld_cache/
    Ignored:    analysis/human-ramnath-fibrosis_cache/
    Ignored:    analysis/meta-chronic-vs-acute_cache/
    Ignored:    analysis/meta-mouse-vs-human_cache/
    Ignored:    analysis/mouse-acute-apap_cache/
    Ignored:    analysis/mouse-acute-bdl_cache/
    Ignored:    analysis/mouse-acute-ccl4_cache/
    Ignored:    analysis/mouse-acute-lps_cache/
    Ignored:    analysis/mouse-acute-ph_cache/
    Ignored:    analysis/mouse-acute-tunicamycin_cache/
    Ignored:    analysis/mouse-chronic-ccl4_cache/
    Ignored:    analysis/plot-acute-apap_cache/
    Ignored:    analysis/plot-acute-bdl_cache/
    Ignored:    analysis/plot-acute-ccl4_cache/
    Ignored:    analysis/plot-acute-ph_cache/
    Ignored:    analysis/plot-chronic-ccl4_cache/
    Ignored:    analysis/plot-chronic-vs-acute_cache/
    Ignored:    analysis/plot-precision-recall_cache/
    Ignored:    analysis/plot-study-overview_cache/
    Ignored:    code/.DS_Store
    Ignored:    code/README.html
    Ignored:    data/.DS_Store
    Ignored:    data/README.html
    Ignored:    data/annotation/
    Ignored:    data/human-diehl-nafld/
    Ignored:    data/human-hampe13-nash/
    Ignored:    data/human-hampe14-misc/
    Ignored:    data/human-hoang-nafld/
    Ignored:    data/human-ramnath-fibrosis/
    Ignored:    data/meta-chronic-vs-acute/
    Ignored:    data/mouse-acute-apap/
    Ignored:    data/mouse-acute-bdl/
    Ignored:    data/mouse-acute-ccl4/
    Ignored:    data/mouse-acute-lps/
    Ignored:    data/mouse-acute-ph/
    Ignored:    data/mouse-acute-tunicamycin/
    Ignored:    data/mouse-chronic-ccl4/
    Ignored:    external_software/.DS_Store
    Ignored:    external_software/README.html
    Ignored:    external_software/stem/.DS_Store
    Ignored:    figures/
    Ignored:    output/.DS_Store
    Ignored:    output/README.html
    Ignored:    output/human-diehl-nafld/
    Ignored:    output/human-hampe13-nash/
    Ignored:    output/human-hampe14-misc/
    Ignored:    output/human-hoang-nafld/
    Ignored:    output/human-ramnath-fibrosis/
    Ignored:    output/meta-chronic-vs-acute/
    Ignored:    output/meta-mouse-vs-human/
    Ignored:    output/mouse-acute-apap/
    Ignored:    output/mouse-acute-bdl/
    Ignored:    output/mouse-acute-ccl4/
    Ignored:    output/mouse-acute-lps/
    Ignored:    output/mouse-acute-ph/
    Ignored:    output/mouse-acute-tunicamycin/
    Ignored:    output/mouse-chronic-ccl4/
    Ignored:    renv/library/
    Ignored:    renv/staging/

Untracked files:
    Untracked:  data/meta-mouse-vs-human/

Unstaged changes:
    Modified:   analysis/meta-mouse-vs-human.Rmd
    Modified:   analysis/plot-acute-bdl.Rmd

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.


These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
html 067c933 christianholland 2020-12-23 Build site.
html 620ffb3 christianholland 2020-12-23 Build site.
html a008b54 christianholland 2020-12-23 Build site.
html 6b6c16a christianholland 2020-12-23 Build site.
html 459dd00 christianholland 2020-12-22 Build site.
html e864f08 christianholland 2020-12-22 Build site.
html 6008649 christianholland 2020-12-21 Build site.
html 25f0b94 christianholland 2020-12-21 Build site.
html 8a9b7bf christianholland 2020-12-20 Build site.
html 24076d2 christianholland 2020-12-20 Build site.
html b8af094 christianholland 2020-12-20 Build site.
html 6dbc304 christianholland 2020-12-20 Build site.
html d8ff438 christianholland 2020-12-20 Build site.
html e22a40b christianholland 2020-12-20 Build site.
html af38450 christianholland 2020-12-19 Build site.
html c73e126 christianholland 2020-12-19 Build site.
html 7bb9aab christianholland 2020-12-18 Build site.
html 51832b8 christianholland 2020-12-18 Initial page build
Rmd 16718bc christianholland 2020-12-18 Start workflowr project.

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