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Last updated: 2022-02-14

Checks: 2 0

Knit directory: cTWAS_analysis/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: 0ade7d3

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 0ade7d3. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .ipynb_checkpoints/
    Ignored:    code/T2D_out/

Untracked files:
    Untracked:  code/.ipynb_checkpoints/
    Untracked:  code/AF_out/
    Untracked:  code/BMI_out/
    Untracked:  code/ctwas_config.R
    Untracked:  code/mapping.R
    Untracked:  code/out/
    Untracked:  code/run_AF_analysis.sbatch
    Untracked:  code/run_AF_analysis.sh
    Untracked:  code/run_AF_ctwas_rss_LDR.R
    Untracked:  code/run_BMI_analysis.sbatch
    Untracked:  code/run_BMI_analysis.sh
    Untracked:  code/run_BMI_ctwas_rss_LDR.R
    Untracked:  code/run_T2D_analysis.sbatch
    Untracked:  code/run_T2D_analysis.sh
    Untracked:  code/run_T2D_ctwas_rss_LDR.R
    Untracked:  data/.ipynb_checkpoints/
    Untracked:  data/AF/
    Untracked:  data/BMI/
    Untracked:  data/UKBB/
    Untracked:  data/UKBB_SNPs_Info.text
    Untracked:  data/gene_OMIM.txt
    Untracked:  data/gene_pip_0.8.txt
    Untracked:  data/mashr_Heart_Atrial_Appendage.db
    Untracked:  data/summary_known_genes_annotations.xlsx
    Untracked:  data/untitled.txt

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
Rmd	0ade7d3	sq-96	2022-02-14	update
html	d20e424	sq-96	2022-02-14	Build site.
Rmd	67211e8	sq-96	2022-02-14	update
html	91f38fa	sq-96	2022-02-13	Build site.
html	e6bc169	sq-96	2022-02-13	Build site.
Rmd	87fee8b	sq-96	2022-02-13	update
html	4106919	sq-96	2021-12-24	Build site.
html	1f785cf	sq-96	2021-12-22	Build site.
html	82c68fd	sq-96	2021-12-22	Build site.
html	9cf0e70	sq-96	2021-12-22	Build site.
html	77de9fb	sq-96	2021-12-22	Build site.
html	6b46de7	sq-96	2021-12-22	Build site.
html	e22d0c9	sq-96	2021-12-21	Build site.
Rmd	a6c7890	sq-96	2021-12-21	Start my new project
html	a8dbae0	sq-96	2021-12-21	Build site.
html	564d909	sq-96	2021-12-20	Build site.
html	e080e7b	sq-96	2021-12-20	Build site.
html	9b1bb6e	sq-96	2021-12-20	Build site.
html	773dcb5	sq-96	2021-12-20	Build site.
html	d6eccf8	sq-96	2021-12-20	Build site.
Rmd	2d5ef03	sq-96	2021-12-20	Publish the files
html	3052d49	sq-96	2021-12-20	Build site.
Rmd	ef6958a	sq-96	2021-12-20	Start workflowr project.