Last updated: 2024-11-15

Checks: 2 0

Knit directory: single-cell-jamboree/analysis/

This reproducible R Markdown analysis was created with workflowr (version 1.7.1). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: 9a3e3e2

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The results in this page were generated with repository version 9a3e3e2. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


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    Ignored:    .Rproj.user/

Untracked files:
    Untracked:  .DS_Store
    Untracked:  .gitignore
    Untracked:  analysis/.DS_Store
    Untracked:  data/.DS_Store
    Untracked:  data/mouse_embryo/
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    Untracked:  output/mouse_embryo/

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These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
Rmd 9a3e3e2 Ziang Zhang 2024-11-15 workflowr::wflow_publish("analysis/index.Rmd")
Rmd 08af9f1 Peter Carbonetto 2024-11-06 Small fix to index.Rmd.
html 8ff4c1f Peter Carbonetto 2024-11-06 Ran workflowr::wflow_publish("index.Rmd").
Rmd 3c3db06 Peter Carbonetto 2024-11-06 Added link to overview page.
html 3d9da55 Peter Carbonetto 2024-11-05 Made a few fixes to Sagnik’s rmd.
html 04c5a1e Peter Carbonetto 2024-11-05 Added link to overview page.
Rmd 62acb47 Peter Carbonetto 2024-11-05 workflowr::wflow_publish("index.Rmd")
Rmd f6e58e0 Peter Carbonetto 2024-10-31 Small edit to index.Rmd.
html 4ae1a52 Peter Carbonetto 2024-10-31 Build site.
Rmd 5b0f28a Peter Carbonetto 2024-10-31 workflowr::wflow_publish("index.Rmd")
html e040f80 Peter Carbonetto 2024-10-31 Added link to the overview page.
Rmd 5362fbc Peter Carbonetto 2024-10-31 workflowr::wflow_publish("index.Rmd", verbose = TRUE)
html 766be29 Peter Carbonetto 2024-10-30 Small fix to the overview page.
Rmd 645a292 Peter Carbonetto 2024-10-30 workflowr::wflow_publish("index.Rmd")
html 8ff6c97 Peter Carbonetto 2024-10-30 Build site.
Rmd 214ec1a Peter Carbonetto 2024-10-30 workflowr::wflow_publish("index.Rmd")
html a3b945a Peter Carbonetto 2024-10-30 Build site.
Rmd 5479746 Peter Carbonetto 2024-10-30 workflowr::wflow_publish("index.Rmd")
html 528d5ef Peter Carbonetto 2024-10-30 First build of the pancreas workflowr page.
Rmd 6750e29 Peter Carbonetto 2024-10-30 workflowr::wflow_publish(c("pancreas.Rmd", "index.Rmd"))
Rmd c090d1d Peter Carbonetto 2024-10-30 Working on initial examination of pancreas data.
html 7638168 Peter Carbonetto 2024-10-21 Build site.
Rmd 6fcd079 Peter Carbonetto 2024-10-21 workflowr::wflow_publish("index.Rmd")
html 8a62d32 Peter Carbonetto 2024-10-21 Build the overview for the first time.
Rmd db49e71 Peter Carbonetto 2024-10-21 workflowr::wflow_publish("index.Rmd")
Rmd 401e597 Peter Carbonetto 2024-10-21 Ran wflow_start(".",name = "single-cell-jamboree",existing = TRUE,git = FALSE).

See here for an overview of the single-cell data sets.

The Human Cell Atlas is another potential source of interesting data sets.

Note that some of the processed data sets can be downloaded from Box via this link.

Analyses: