Last updated: 2020-11-30

Checks: 2 0

Knit directory: rss-net-results/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.


Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version a2f291c. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.


These are the previous versions of the repository in which changes were made to the R Markdown (analysis/license.Rmd) and HTML (docs/license.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
html b09834c xiangzhu 2020-03-15 Build site.
Rmd 7104402 xiangzhu 2020-03-15 wflow_publish(“analysis/license.Rmd”)
html 9656863 xiangzhu 2020-03-09 Build site.
Rmd c41a206 xiangzhu 2020-03-09 wflow_publish(“analysis/license.Rmd”)
html 111157b xiangzhu 2020-03-09 Build site.
Rmd e34126a xiangzhu 2020-03-09 wflow_publish(“analysis/license.Rmd”)
html 8fde153 xiangzhu 2020-02-06 Build site.
html 8209433 xiangzhu 2020-01-31 Build site.
html 23bbc44 xiangzhu 2019-08-17 Build site.
Rmd 11e8630 xiangzhu 2019-08-17 wflow_publish(“analysis/license.Rmd”)
html 889612b Xiang Zhu 2018-07-19 Build site.
html fcdb217 Xiang Zhu 2018-07-19 Build site.
Rmd 041a3ef Xiang Zhu 2018-07-19 wflow_publish(files = c(“analysis/index.Rmd”, “analysis/license.Rmd”))
Rmd c07849b Xiang Zhu 2018-07-19 Start workflowr project.

Currently the online notebook is licensed under the Creative Commons Attribution-NoDerivatives 4.0 International License (CC BY-ND 4.0). This means you are free to include content from this site in your presentation, blog, or social media posts, as long you cite it. The “no derivatives” (ND) clause means you cannot modify the results and distribute them. Once the following research article becomes a peer-reviewed publication, I will remove the ND clause and use a different CC License.

If you use any results from this notebook, please explicitly acknowledge that the results are retrieved from https://xiangzhu.github.io/rss-peca/, and cite the following research article:

Xiang Zhu, Zhana Duren, Wing Hung Wong (2020). Modeling regulatory network topology improves genome-wide analyses of complex human traits. bioRxiv. https://doi.org/10.1101/2020.03.13.990010.

The source codes of the notebook are licensed under the GNU General Public License, version 3.0 (GPLv3).

Icons used in this notebook are credited to the Noun Project https://thenounproject.com.