Last updated: 2020-09-30

Checks: 7 0

Knit directory: uci_covid19_dashboard/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Environment: empty

Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.

Seed: set.seed(20200714)

The command set.seed(20200714) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.

Session information: recorded

Great job! Recording the operating system, R version, and package versions is critical for reproducibility.

Cache: none

Nice! There were no cached chunks for this analysis, so you can be confident that you successfully produced the results during this run.

File paths: relative

Great job! Using relative paths to the files within your workflowr project makes it easier to run your code on other machines.

Repository version: 5aa40d5

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 5aa40d5. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


Ignored files:
    Ignored:    .Renviron

Untracked files:
    Untracked:  r_env.yml
    Untracked:  rebuild

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
html 5aa40d5 igoldsteinh 2020-09-29 third times the charm
html c2e9a01 markellekelly 2020-09-29 automatic update - 2020-09-29
html 5ada0ac markellekelly 2020-09-28 automatic update - 2020-09-28
html 10029b4 markellekelly 2020-09-27 automatic update - 2020-09-27
html 1453b97 markellekelly 2020-09-24 automatic update - 2020-09-24
html 8196bbf markellekelly 2020-09-23 automatic update - 2020-09-23
html fa99b64 markellekelly 2020-09-22 automatic update - 2020-09-22
html c661c7b markellekelly 2020-09-21 automatic update - 2020-09-21
html c926c92 markellekelly 2020-09-20 automatic update - 2020-09-20
Rmd 540763c vnminin 2020-09-19 added link to OC Situation report
html 540763c vnminin 2020-09-19 added link to OC Situation report
html 805f322 markellekelly 2020-09-19 automatic update - 2020-09-19
html 2dfedff markellekelly 2020-09-18 automatic update - 2020-09-18
html 46d1c05 markellekelly 2020-09-17 automatic update - 2020-09-17
html 32397cb markellekelly 2020-09-16 automatic update - 2020-09-16
html 8a2d2d7 markellekelly 2020-09-15 automatic update - 2020-09-15
html 822d8a3 markellekelly 2020-09-14 automatic update - 2020-09-14
html ef2f2be markellekelly 2020-09-12 automatic update - 2020-09-12
html f0cfcae markellekelly 2020-09-11 automatic update - 2020-09-11
html 7ad9506 markellekelly 2020-09-10 automatic update - 2020-09-10
html 51bc9d4 markellekelly 2020-09-09 automatic update - 2020-09-09
html 0c63951 markellekelly 2020-09-08 automatic update - 2020-09-08
html cb3b11a markellekelly 2020-09-07 automatic update - 2020-09-07
html ac05fe5 markellekelly 2020-09-06 automatic update - 2020-09-06
html b42a33b markellekelly 2020-09-05 automatic update - 2020-09-05
html a61fdd8 markellekelly 2020-09-04 automatic update - 2020-09-04
html e2709b0 markellekelly 2020-09-03 automatic update - 2020-09-03
html 5296774 markellekelly 2020-09-02 automatic update - 2020-09-02
html 6048fdf markellekelly 2020-09-01 automatic update - 2020-09-01
html a27d38f markellekelly 2020-08-31 automatic update - 2020-08-31
html 74ceb0a markellekelly 2020-08-30 automatic update - 2020-08-30
html 44a84ad markellekelly 2020-08-29 automatic update - 2020-08-29
html 33918be markellekelly 2020-08-28 automatic update - 2020-08-28
html c2d1536 markellekelly 2020-08-27 automatic update - 2020-08-27
html c96e3f3 vnminin 2020-08-27 consistent message above trend plots
html cf421b9 markellekelly 2020-08-26 automatic update - 2020-08-26
html 9d099cd vnminin 2020-08-25 short dropdown menu names
html 726e8dc markellekelly 2020-08-25 automatic update - 2020-08-25
Rmd e239a00 vnminin 2020-08-24 added a note about dropdown menus
html e239a00 vnminin 2020-08-24 added a note about dropdown menus
html 0384f5d Rachel Longjohn 2020-08-24 rebuild html
Rmd 95d84d5 Rachel Longjohn 2020-08-24 small syntax tweaks
html 95d84d5 Rachel Longjohn 2020-08-24 small syntax tweaks
Rmd 518db49 Rachel Longjohn 2020-08-24 Merge branch ‘master’ into county-sets
html 518db49 Rachel Longjohn 2020-08-24 Merge branch ‘master’ into county-sets
Rmd 2559f5d Rachel Longjohn 2020-08-24 add more county sets
html 2559f5d Rachel Longjohn 2020-08-24 add more county sets
Rmd 5ca5985 vnminin 2020-08-24 added retina option for figures to be higher resolution on retina displays
html 5ca5985 vnminin 2020-08-24 added retina option for figures to be higher resolution on retina displays
html b79277f markellekelly 2020-08-24 automatic update - 2020-08-24
html f932f34 markellekelly 2020-08-23 automatic update - 2020-08-23
html eaad166 markellekelly 2020-08-22 automatic update - 2020-08-22
html 8b79b5e vnminin 2020-08-21 added Andrew as an additional media contact
html f30d34d markellekelly 2020-08-21 automatic update - 2020-08-21
html 7069376 markellekelly 2020-08-20 automatic update - 2020-08-20
html 223088a markellekelly 2020-08-19 automatic update - 2020-08-19
html 64a83bf markellekelly 2020-08-18 automatic update - 2020-08-18
html bf27c21 igoldsteinh 2020-08-17 updayte
html 4549dca igoldsteinh 2020-08-16 up date
html a0f2b69 igoldsteinh 2020-08-15 manual update
html ae98627 vnminin 2020-08-14 daily date pull
Rmd 24e4ed4 vnminin 2020-08-13 data update
html 24e4ed4 vnminin 2020-08-13 data update
html 616ee7e vnminin 2020-08-12 daily data update
Rmd 8db6eb5 vnminin 2020-08-11 pushed a note about reporting system problems
html 8db6eb5 vnminin 2020-08-11 pushed a note about reporting system problems
html 0803f2b vnminin 2020-08-11 data update
html 19f2315 vnminin 2020-08-10 push with updated data
html a5927e7 vnminin 2020-08-09 rebuilding with new data
Rmd f2f0194 vnminin 2020-08-08 moved watermark to the left and made time stamp reflect the latest date avaialble in CA portal
html f2f0194 vnminin 2020-08-08 moved watermark to the left and made time stamp reflect the latest date avaialble in CA portal
html fb0028a vnminin 2020-08-08 ca portal got data
Rmd 9589b6d vnminin 2020-08-07 two time stamps
html 9589b6d vnminin 2020-08-07 two time stamps
html 60756e0 Damon Bayer 2020-08-07 data update
html b3f0a7a vnminin 2020-08-06 rebuilding to fix testing not linking to itself
html 35e30c1 vnminin 2020-08-06 daily data update; I am a good robot
html 7334400 vnminin 2020-08-05 data update
Rmd 6466f12 vnminin 2020-08-04 data pull and fixed the last date being cut off
html 6466f12 vnminin 2020-08-04 data pull and fixed the last date being cut off
html 5db0d2e vnminin 2020-08-03 data update
html 4afb037 vnminin 2020-08-02 forgot to republish
html e3847ed vnminin 2020-08-02 added testing maps
html a873dd5 vnminin 2020-08-01 data update
html 8d0b6ce vnminin 2020-08-01 daily date update
html e024ad3 Damon Bayer 2020-07-31 Positivity Maps + Navigation Updates
html d621638 Damon Bayer 2020-07-31 Icons in navigation
html 490ebde vnminin 2020-07-31 daily data pull
html 4b572aa vnminin 2020-07-30 fixing Trends navigation
html acc591d vnminin 2020-07-30 time stamp for maps
html a93ad42 vnminin 2020-07-30 now really changing filel name
html b785fc2 Damon Bayer 2020-07-30 Wider Maps page
html 7e4cb79 vnminin 2020-07-30 republishing just in case
html 244103f vnminin 2020-07-30 rebuilt just in case
Rmd 9b1533f Damon Bayer 2020-07-30 Separate Maps Page
html 9b1533f Damon Bayer 2020-07-30 Separate Maps Page
Rmd cb818d8 Damon Bayer 2020-07-30 Added maps
html cb818d8 Damon Bayer 2020-07-30 Added maps
html a4d0d51 vnminin 2020-07-29 pulling the most recent data from ca portal
html 7d0bcf4 vnminin 2020-07-28 experimenting with spacing and sizing of logos
html 0590a7c Damon Bayer 2020-07-28 Even better colors
html a5a62c9 Damon Bayer 2020-07-28 Better Colors
html 68acc48 vnminin 2020-07-28 added IDS logo
html 86b4d4a vnminin 2020-07-28 Build site.
Rmd 9011d17 vnminin 2020-07-27 adjusted watermark
html 9011d17 vnminin 2020-07-27 adjusted watermark
html abd9c55 Damon Bayer 2020-07-27 Update HTML
Rmd eaeac27 Damon Bayer 2020-07-27 Better Watermarks #3
Rmd 89bec5b Damon Bayer 2020-07-27 Fix Legend #2
html 84ab7e1 vnminin 2020-07-27 july 27 ca data update
html bab42bc vnminin 2020-07-26 triggering an update with latest data
Rmd f08c6cc Damon Bayer 2020-07-24 Watermark & Legend Fix
html f08c6cc Damon Bayer 2020-07-24 Watermark & Legend Fix
Rmd ed98b18 Damon Bayer 2020-07-24 Fix Site Title on Home
html eb680ce vnminin 2020-07-24 republishing to update plots
Rmd 9a5a980 vnminin 2020-07-23 moved a bit stay at home text
html 9a5a980 vnminin 2020-07-23 moved a bit stay at home text
Rmd f07587a vnminin 2020-07-23 all plots start on the same date; moved subtitle to title
html f07587a vnminin 2020-07-23 all plots start on the same date; moved subtitle to title
html 9aa359e vnminin 2020-07-23 shortenting title for friendlier mobile version
Rmd c14824c Damon Bayer 2020-07-23 Remove Home text
html c14824c Damon Bayer 2020-07-23 Remove Home text
Rmd 9ccdb5d vnminin 2020-07-22 playing with appearance
html 9ccdb5d vnminin 2020-07-22 playing with appearance
Rmd 938ccdf Damon Bayer 2020-07-22 2 Column Layout
html 938ccdf Damon Bayer 2020-07-22 2 Column Layout
html b4fb3ae Damon Bayer 2020-07-21 update 2020-07-21
html c95cee3 Damon Bayer 2020-07-20 Hide Workflowr buttons
Rmd 7bd8ff7 Damon Bayer 2020-07-20 Y Axis Labels
Rmd 77cc6b0 Damon Bayer 2020-07-20 Fix Stay at Home text position
html 77cc6b0 Damon Bayer 2020-07-20 Fix Stay at Home text position
html 5369804 Damon Bayer 2020-07-19 Update 2020-07-19
Rmd 32aeff8 Damon Bayer 2020-07-17 Orange County is Orange
html 32aeff8 Damon Bayer 2020-07-17 Orange County is Orange
Rmd bc97c2a Damon Bayer 2020-07-17 Changes from plot feedback
html bc97c2a Damon Bayer 2020-07-17 Changes from plot feedback
Rmd 02dbf86 Damon Bayer 2020-07-17 New Data + ICU Occupancy
html 02dbf86 Damon Bayer 2020-07-17 New Data + ICU Occupancy
html 65c7195 Damon Bayer 2020-07-16 theme change
html cc4c194 Damon Bayer 2020-07-16 First Draft
Rmd 68a123b Damon Bayer 2020-07-16 workflowr::wflow_git_commit(all = T)
Rmd de88c5a Damon Bayer 2020-07-16 workflowr::wflow_git_commit(all = T)
html de88c5a Damon Bayer 2020-07-16 workflowr::wflow_git_commit(all = T)
html 6b4b352 Damon Bayer 2020-07-14 Build site.
Rmd 524eb53 Damon Bayer 2020-07-14 wflow_publish(“analysis/index.Rmd”)
Rmd 66110a1 Damon Bayer 2020-07-14 Initial Proof of Concept
html 66110a1 Damon Bayer 2020-07-14 Initial Proof of Concept
Rmd 6151dc8 Damon Bayer 2020-07-14 Start workflowr project.