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Last updated: 2022-11-17

Checks: 2 0

Knit directory: muse/

This reproducible R Markdown analysis was created with workflowr (version 1.7.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: b2043f3

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version b2043f3. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    r_packages_4.1.2/
    Ignored:    r_packages_4.2.0/

Untracked files:
    Untracked:  analysis/cell_ranger.Rmd
    Untracked:  data/ncrna_NONCODE[v3.0].fasta.tar.gz
    Untracked:  data/ncrna_noncode_v3.fa

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
Rmd	b2043f3	Dave Tang	2022-11-17	Parallel computation in R
html	7a6571a	Dave Tang	2022-11-04	Build site.
Rmd	6def24c	Dave Tang	2022-11-04	Adjacency list
html	6bbf281	Dave Tang	2022-10-20	Build site.
Rmd	f9bfcec	Dave Tang	2022-10-20	PCA
html	8107082	Dave Tang	2022-09-07	Build site.
Rmd	0a02109	Dave Tang	2022-09-07	Backticks in R
html	b814eb1	Dave Tang	2022-04-28	Build site.
Rmd	9b739a1	Dave Tang	2022-04-28	Using the seqinr package
html	b743be8	Dave Tang	2022-04-26	Build site.
Rmd	9ae1c27	Dave Tang	2022-04-26	Aggregation with dplyr
html	1229a49	Dave Tang	2022-04-22	Build site.
Rmd	8e4bd29	Dave Tang	2022-04-22	Fix bullet point
html	fd41c75	Dave Tang	2022-04-22	Build site.
Rmd	e372c81	Dave Tang	2022-04-22	TSS
html	d334dbd	Dave Tang	2022-04-14	Build site.
Rmd	a9f5e22	Dave Tang	2022-04-14	Distance metrics
html	d6644d2	Dave Tang	2021-06-22	Build site.
Rmd	8ae8e21	Dave Tang	2021-06-22	Post on splitting a single column of annotations
html	1cd1577	davetang	2021-01-27	Build site.
Rmd	687a6ca	davetang	2021-01-27	Gene Ontology Enrichment Analysis
html	6ef7a62	davetang	2020-12-01	Build site.
Rmd	acb1733	davetang	2020-12-01	Read GTF files into R
html	e8c8661	davetang	2020-11-15	Build site.
Rmd	ab3533f	davetang	2020-11-15	Fix link
html	5dc50c6	davetang	2020-11-15	Build site.
Rmd	9639627	davetang	2020-11-15	Complex UpSet plots
html	2db13ea	davetang	2020-11-10	Build site.
Rmd	268312f	davetang	2020-11-10	wflow_publish(files = c("analysis/index.Rmd", "analysis/google_trends.Rmd",
html	03f05e8	davetang	2020-10-18	Build site.
Rmd	f79342a	davetang	2020-10-18	Markov chain post
html	586b91f	Dave Tang	2020-07-12	Build site.
Rmd	b1d6edd	Dave Tang	2020-07-12	pheatmap
Rmd	b3f3dc1	Dave Tang	2020-07-12	Start workflowr project.

I refer to my blog often to look up notes and code I have written. I will recreate my blog posts here, to make it easier to reuse and also maintain my code. Some posts only exist here and not on my blog, so there is no original hyperlink back to my blog.

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