Comparison of cant estimates to results of Gruber et al 2019

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Last updated: 2020-11-26

Checks: 7 0

Knit directory: Cant_eMLR/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

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R Markdown file: up-to-date

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Environment: empty

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Seed: set.seed(20200707)

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Session information: recorded

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File paths: relative

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Repository version: fdd65b6

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The results in this page were generated with repository version fdd65b6. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

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Ignored files:
    Ignored:    .Rproj.user/
    Ignored:    data/
    Ignored:    dump/

Untracked files:
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Unstaged changes:
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    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-01-25_n_2240_cruise_350_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-01-25_n_59_cruise_558_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-03-08_n_67_cruise_494_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-04-28_n_60_cruise_559_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-05-25_n_894_cruise_683_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-05-31_n_251_cruise_168_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-06-11_n_1558_cruise_495_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-07-17_n_66_cruise_599_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-09-14_n_1839_cruise_266_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-09-21_n_503_cruise_666_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-09-30_n_178_cruise_496_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-10-25_n_69_cruise_600_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-12-09_n_2670_cruise_497_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2006-01-24_n_68_cruise_561_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2006-03-08_n_1719_cruise_306_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2006-04-25_n_38_cruise_562_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2006-06-04_n_589_cruise_25_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2006-06-16_n_1_cruise_602_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2006-06-21_n_968_cruise_498_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2006-07-11_n_37_cruise_603_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2006-10-26_n_68_cruise_604_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-01-23_n_85_cruise_564_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-02-28_n_1678_cruise_352_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-03-09_n_1058_cruise_501_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-04-11_n_1995_cruise_353_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-04-30_n_63_cruise_565_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-05-30_n_632_cruise_327_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-07-03_n_47_cruise_606_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-07-31_n_33_cruise_607_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-08-14_n_1212_cruise_502_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-09-16_n_486_cruise_667_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-09-18_n_299_cruise_503_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-10-30_n_1828_cruise_504_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-10-31_n_63_cruise_566_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-12-07_n_1654_cruise_505_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-01-08_n_608_cruise_74_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-01-16_n_3265_cruise_345_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-02-01_n_79_cruise_608_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-02-21_n_1666_cruise_354_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-03-02_n_996_cruise_385_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-03-15_n_936_cruise_19_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-04-06_n_846_cruise_75_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-04-28_n_57_cruise_568_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-05-28_n_426_cruise_171_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-06-22_n_880_cruise_394_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-10-21_n_363_cruise_506_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-01-07_n_345_cruise_674_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-02-16_n_673_cruise_675_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-02-27_n_1170_cruise_84_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-03-29_n_1074_cruise_676_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-04-17_n_3611_cruise_355_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-05-18_n_2666_cruise_507_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-05-23_n_317_cruise_172_.png
    Deleted:    output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-07-11_n_64_cruise_635_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-08-02_n_127_cruise_26_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-11-10_n_319_cruise_63_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-11-18_n_160_cruise_1059_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-01-01_n_4235_cruise_273_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-01-25_n_935_cruise_699_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-03-30_n_2343_cruise_346_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-04-02_n_387_cruise_703_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-05-21_n_273_cruise_173_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-05-26_n_168_cruise_1085_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-06-19_n_847_cruise_395_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-06-26_n_157_cruise_1063_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-07-25_n_1356_cruise_609_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-08-19_n_88_cruise_1064_.png
    Deleted:    output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-10-06_n_72_cruise_2028_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-11-15_n_87_cruise_2029_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-12-22_n_1308_cruise_20_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-01-17_n_108_cruise_1065_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-01-30_n_270_cruise_1087_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-02-18_n_121_cruise_1066_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-03-21_n_2158_cruise_295_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-05-18_n_527_cruise_174_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-06-25_n_250_cruise_1067_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-07-07_n_2466_cruise_517_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-10-08_n_896_cruise_347_.png
    Deleted:    output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-10-20_n_105_cruise_2031_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-01-28_n_253_cruise_1090_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-02-06_n_591_cruise_1002_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-02-19_n_242_cruise_1069_.png
    Deleted:    output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-04-01_n_826_cruise_329_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-04-15_n_111_cruise_2033_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-05-01_n_1404_cruise_330_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-06-07_n_152_cruise_1029_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-06-26_n_388_cruise_1092_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-07-05_n_718_cruise_1031_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-07-20_n_793_cruise_1071_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-08-14_n_1250_cruise_518_.png
    Deleted:    output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-11-25_n_77_cruise_1073_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-12-05_n_231_cruise_2071_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-12-12_n_118_cruise_1074_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-12-15_n_828_cruise_1050_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-01-23_n_902_cruise_1051_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-01-29_n_369_cruise_1093_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-02-19_n_221_cruise_1076_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-03-14_n_222_cruise_2072_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-05-02_n_2819_cruise_1035_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-05-06_n_298_cruise_2073_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-06-09_n_233_cruise_1078_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-07-24_n_678_cruise_1079_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-08-21_n_883_cruise_1096_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-09-02_n_2030_cruise_1041_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-10-11_n_140_cruise_2035_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-12-06_n_137_cruise_2074_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-01-11_n_1770_cruise_1042_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-01-24_n_288_cruise_2075_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-02-22_n_253_cruise_2038_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-03-13_n_187_cruise_2076_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-04-18_n_2219_cruise_1036_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-04-29_n_78_cruise_2039_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-05-05_n_288_cruise_2077_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-05-18_n_272_cruise_2040_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-06-16_n_195_cruise_2078_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-07-08_n_374_cruise_1098_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-07-25_n_403_cruise_2041_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-08-03_n_1705_cruise_1053_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-08-10_n_726_cruise_1099_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-11-24_n_82_cruise_2079_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-12-11_n_536_cruise_1004_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-01-19_n_65_cruise_2043_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-01-29_n_315_cruise_2080_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-02-14_n_234_cruise_2044_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-03-04_n_215_cruise_2081_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-03-25_n_17_cruise_1017_.png
    Deleted:    output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-04-19_n_185_cruise_1103_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-04-20_n_96_cruise_2045_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-05-02_n_230_cruise_2083_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-05-04_n_874_cruise_1043_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-05-12_n_368_cruise_1027_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-05-17_n_141_cruise_2046_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-05-17_n_689_cruise_1011_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-06-09_n_1589_cruise_1044_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-06-13_n_281_cruise_2084_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-07-20_n_445_cruise_2047_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-08-16_n_817_cruise_1100_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-11-20_n_106_cruise_2086_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-01-03_n_663_cruise_1054_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-01-16_n_78_cruise_2049_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-01-25_n_287_cruise_2087_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-02-15_n_381_cruise_2050_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-03-01_n_1359_cruise_1046_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-03-04_n_230_cruise_2088_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-04-13_n_106_cruise_2051_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-05-04_n_307_cruise_2090_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-05-16_n_146_cruise_2052_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-05-31_n_2080_cruise_1020_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-06-16_n_263_cruise_2091_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-06-24_n_104_cruise_2053_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-07-05_n_837_cruise_2011_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-07-21_n_1102_cruise_1101_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-08-13_n_290_cruise_2054_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-09-25_n_160_cruise_2055_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-11-20_n_103_cruise_2056_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-12-25_n_3975_cruise_1045_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2017-01-12_n_103_cruise_2093_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2017-01-30_n_368_cruise_2057_.png
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---

1 Libraries

Loading libraries specific to the the analysis performed in this section.

library(scales)
library(marelac)
library(gt)

2 Data sources

Following Cant estimates from this study (JDM) and Gruber 2019 (G19) are used:

• Zonal mean (basin, lat, depth)
• Inventories (lat, lon)

2.1 This study

cant_zonal_JDM <-
  read_csv(here::here("data/output",
                         "cant_zonal.csv"))

cant_zonal_JDM <- cant_zonal_JDM %>%
  filter(eras == "JGOFS_GO") %>%
  select(lat,
         depth,
         basin_AIP,
         cant_mean,
         cant_pos_mean,
         cant_sd,
         cant_pos_sd)


cant_inv_JDM <-
  read_csv(here::here("data/output",
                         "cant_inv.csv"))

cant_inv_JDM <- cant_inv_JDM %>% 
  filter(eras == "JGOFS_GO") %>% 
  select(-c(eras))

2.2 Gruber 2019

cant_inv_G19 <- 
  read_csv(here::here("data/interim",
                       "G19_cant_inv.csv"))

cant_inv_G19 <- cant_inv_G19 %>% 
  select(-eras)

cant_zonal_G19 <- 
  read_csv(here::here("data/interim",
                       "G19_cant_zonal.csv"))

cant_zonal_G19 <- cant_zonal_G19 %>%
  filter(eras == "JGOFS_GO") %>%
  select(lat,
         depth,
         basin_AIP,
         cant_mean,
         cant_pos_mean,
         cant_sd,
         cant_pos_sd)

2.3 Join data sets

Inventories and zonal sections are merged, and differences calculate per grid cell.

cant_inv_long <- bind_rows(
  cant_inv_JDM %>%  mutate(estimate = "JDM"),
  cant_inv_G19 %>%  mutate(estimate = "G19")
  )

cant_inv_wide <- cant_inv_long %>% 
  pivot_wider(names_from = estimate, values_from = cant_pos_inv:cant_inv) %>% 
  drop_na()

cant_inv_wide <- cant_inv_wide %>% 
  mutate(cant_pos_inv_offset = cant_pos_inv_JDM - cant_pos_inv_G19,
         cant_inv_offset = cant_inv_JDM - cant_inv_G19,
         estimate = "JDM - G19")

cant_zonal_long <- bind_rows(
  cant_zonal_JDM %>%  mutate(estimate = "JDM"),
  cant_zonal_G19 %>%  mutate(estimate = "G19")
  )

cant_zonal_wide <- cant_zonal_long %>% 
  pivot_wider(names_from = estimate, values_from = cant_mean:cant_pos_sd) %>% 
  drop_na()

cant_zonal_wide <- cant_zonal_wide %>% 
  mutate(cant_pos_mean_offset = cant_pos_mean_JDM - cant_pos_mean_G19,
         cant_mean_offset = cant_mean_JDM - cant_mean_G19,
         estimate = "JDM - G19")

3 C_ant budgets

Global C_ant inventories were estimated in units of Pg C, based on all vs positive only Cant estimates. Please note that here we only added cant values in the upper 3000m and do not apply additional corrections for areas not covered.

cant_inv_budget <- cant_inv_long %>% 
  mutate(surface_area = earth_surf(lat, lon),
         cant_inv_grid = cant_inv*surface_area,
         cant_pos_inv_grid = cant_pos_inv*surface_area) %>% 
  group_by(basin_AIP, estimate) %>% 
  summarise(cant_total = sum(cant_inv_grid)*12*1e-15,
            cant_total = round(cant_total,1),
            cant_pos_total = sum(cant_pos_inv_grid)*12*1e-15,
            cant_pos_total = round(cant_pos_total,1)) %>% 
  ungroup()


cant_inv_budget %>%
  gt(rowname_col = "basin_AIP",
     groupname_col = c("estimate")) %>% 
  summary_rows(
    groups = TRUE,
    fns = list(total = "sum")
  )

	cant_total	cant_pos_total
G19
Atlantic	11.1	11.3
Indian	5.7	7.2
Pacific	12.8	13.6
total	29.60	32.10
JDM
Atlantic	11.2	11.6
Indian	10.7	10.9
Pacific	18.6	19.1
total	40.50	41.60

rm(cant_inv_budget)

4 Cant - positive only

In a first series of plots we explore the distribution of Cant, taking only positive estimates into account (positive here refers to the mean cant estimate across 10 eMLR model predictions available for each grid cell). Negative values were set to zero before calculating mean sections and inventories.

4.1 Inventory map

4.1.1 Absolute values

Column inventory of positive cant between the surface and 3000m water depth per horizontal grid cell (lat x lon).

i_estimate <- unique(cant_inv_long$estimate)[1]

for (i_estimate in unique(cant_inv_long$estimate)) {
  
  print(
    p_map_cant_inv(
      cant_inv_long %>% filter(estimate == i_estimate),
      subtitle_text = paste("Estimate:", i_estimate))
    )
  
}

4.1.2 Offset

Column inventory of positive cant between the surface and 3000m water depth per horizontal grid cell (lat x lon).

p_map_cant_inv_offset(cant_inv_wide,
                      "cant_pos_inv_offset",
                      subtitle_text = "JDM - G19")

4.2 Zonal mean sections

4.2.1 Absolute values

# i_basin_AIP <- unique(cant_zonal_long$basin_AIP)[1]
# i_estimate <- unique(cant_zonal_long$estimate)[1]

for (i_basin_AIP in unique(cant_zonal_long$basin_AIP)) {
  for (i_estimate in unique(cant_zonal_long$estimate)) {
   
     print(
      p_section_zonal(
        df = cant_zonal_long %>%
          filter(basin_AIP == i_basin_AIP,
                 estimate == i_estimate),
        var = "cant_pos_mean",
        plot_slabs = "n",
        subtitle_text =
          paste("Basin:", i_basin_AIP, "| estimate:", i_estimate)
      )
      
    )
    
  }
}

4.2.2 Offset

# i_basin_AIP <- unique(cant_zonal_wide$basin_AIP)[1]
# i_estimate <- unique(cant_zonal_wide$estimate)[1]

for (i_basin_AIP in unique(cant_zonal_wide$basin_AIP)) {
    print(
      p_section_zonal(
        df = cant_zonal_wide %>%
          filter(basin_AIP == i_basin_AIP),
        var = "cant_pos_mean_offset",
        breaks = parameters$breaks_cant_offset,
        plot_slabs = "n",
        col = "divergent",
        subtitle_text =
          paste("Basin:", i_basin_AIP)
      )
    )
  }

5 Cant - all

In a first series of plots we explore the distribution of cant, taking only positive estimates into account (positive here refers to the mean cant estimate across 10 eMLR model predictions available for each grid cell). Negative values were set to zero before calculating mean sections and inventories.

5.1 Inventory map

5.1.1 Absolute values

Column inventory of Cant (including positive and negative values) between the surface and 3000m water depth per horizontal grid cell (lat x lon).

# i_estimate <- unique(cant_inv_long$estimate)[1] 

for (i_estimate in unique(cant_inv_long$estimate)) {
  
  print(
    p_map_cant_inv(
    cant_inv_long %>% filter(estimate == i_estimate),
    subtitle_text = paste("Estimate:", i_estimate),
    col = "divergent")
  )
  
}

5.1.2 Offset

p_map_cant_inv_offset(
  df = cant_inv_wide,
  var = "cant_inv_offset",
  subtitle_text = "JDM - G19")

5.2 Zonal mean sections

5.2.1 Absolute values

# i_basin_AIP <- unique(df$basin_AIP)[1]
# i_estimate <- unique(df$estimate)[1]

for (i_basin_AIP in unique(cant_zonal_long$basin_AIP)) {
  for (i_estimate in unique(cant_zonal_long$estimate)) {
   
     print(
      p_section_zonal(
        df = cant_zonal_long %>%
          filter(basin_AIP == i_basin_AIP,
                 estimate == i_estimate),
        var = "cant_mean",
        col = "divergent",
        breaks = parameters$breaks_cant,
        plot_slabs = "n",
        legend_title = expression(atop(Delta * C[ant],
                                          (mu * mol ~ kg ^ {-1}))),
        subtitle_text =
          paste("Basin:", i_basin_AIP, "| estimate:", i_estimate)
      )
      
    )
    
  }
}

5.2.2 Offset

# i_basin_AIP <- unique(cant_zonal_wide$basin_AIP)[1]
# i_estimate <- unique(cant_zonal_wide$estimate)[1]

for (i_basin_AIP in unique(cant_zonal_wide$basin_AIP)) {

     print(
      p_section_zonal(
        df = cant_zonal_wide %>%
          filter(basin_AIP == i_basin_AIP),
        var = "cant_mean_offset",
        plot_slabs = "n",
        col = "divergent",
        breaks = parameters$breaks_cant_offset,
        subtitle_text =
          paste("Basin:", i_basin_AIP, "| estimate:", i_estimate)
      )
      
    )
}

6 Known issues

Deviations between this study and the results by Gruber et al (2019), short G19, for the same period, might be attributable to following known differences in the implementation of the eMLR(C*) method:

• GLODAPv2_2020 here vs an extended version of GLODAPv2 in G19
• flagging: Here, we accept f flags 0 and 2 (except for tco2, where only 0 is accepted). G19 claim to use 0 throughout, yet have a high coverage of talk observations in the SE Pacific
  
• Neutral density calculation: Here and in GLODAPv2_2020 a polynomial approximation is used, whereas G19 uses the original Matlab code
  
• Predictor climatology: Here we used WOA18, whereas G19 used WOA13
• Missing data in the GLODAP mapped climatology, eg NO3 at surface, where not filled in this study
• cant on neutral density levels calculate as slab mean, rather than on one surface
• Here, surface delta cant were calculated based on Luecker constants, rather than Mehrbach as in G19
• Here, pCO2 was calculated from DIC/TA Climatology

Session information

sessionInfo()

R version 4.0.2 (2020-06-22)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18363)

Matrix products: default

locale:
[1] LC_COLLATE=English_Germany.1252  LC_CTYPE=English_Germany.1252   
[3] LC_MONETARY=English_Germany.1252 LC_NUMERIC=C                    
[5] LC_TIME=English_Germany.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] gt_0.2.2        marelac_2.1.10  shape_1.4.4     scales_1.1.1   
 [5] metR_0.7.0      scico_1.2.0     patchwork_1.0.1 collapse_1.3.2 
 [9] forcats_0.5.0   stringr_1.4.0   dplyr_1.0.0     purrr_0.3.4    
[13] readr_1.3.1     tidyr_1.1.0     tibble_3.0.3    ggplot2_3.3.2  
[17] tidyverse_1.3.0 workflowr_1.6.2

loaded via a namespace (and not attached):
 [1] fs_1.4.2          lubridate_1.7.9   gsw_1.0-5         httr_1.4.2       
 [5] rprojroot_1.3-2   tools_4.0.2       backports_1.1.8   R6_2.4.1         
 [9] DBI_1.1.0         colorspace_1.4-1  withr_2.2.0       tidyselect_1.1.0 
[13] compiler_4.0.2    git2r_0.27.1      cli_2.0.2         rvest_0.3.6      
[17] xml2_1.3.2        isoband_0.2.2     sandwich_2.5-1    labeling_0.3     
[21] sass_0.2.0        checkmate_2.0.0   digest_0.6.25     rmarkdown_2.3    
[25] oce_1.2-0         pkgconfig_2.0.3   htmltools_0.5.0   dbplyr_1.4.4     
[29] rlang_0.4.7       readxl_1.3.1      rstudioapi_0.11   generics_0.0.2   
[33] farver_2.0.3      zoo_1.8-8         jsonlite_1.7.0    magrittr_1.5     
[37] Formula_1.2-3     Matrix_1.2-18     Rcpp_1.0.5        munsell_0.5.0    
[41] fansi_0.4.1       lifecycle_0.2.0   stringi_1.4.6     whisker_0.4      
[45] yaml_2.2.1        grid_4.0.2        blob_1.2.1        parallel_4.0.2   
[49] promises_1.1.1    crayon_1.3.4      lattice_0.20-41   haven_2.3.1      
[53] hms_0.5.3         seacarb_3.2.13    knitr_1.30        pillar_1.4.6     
[57] reprex_0.3.0      glue_1.4.1        evaluate_0.14     data.table_1.13.0
[61] modelr_0.1.8      vctrs_0.3.2       httpuv_1.5.4      testthat_2.3.2   
[65] cellranger_1.1.0  gtable_0.3.0      assertthat_0.2.1  xfun_0.16        
[69] xtable_1.8-4      broom_0.7.0       lfe_2.8-5.1       later_1.1.0.1    
[73] ellipsis_0.3.1    here_0.1