Last updated: 2020-11-26

Checks: 7 0

Knit directory: Cant_eMLR/

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Ignored files:
    Ignored:    .Rproj.user/
    Ignored:    data/
    Ignored:    dump/

Untracked files:
    Untracked:  code/biogeochemical_functions.R
    Untracked:  code/test_scripts/analysis_previous_studies.Rmd
    Untracked:  code/test_scripts/read_World_Ocean_Atlas_2013_Clement.Rmd
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    Untracked:  output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1983-01-10_n_1241_cruise_238_.png
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    Untracked:  output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1997-04-26_n_20_cruise_648_.png
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Unstaged changes:
    Modified:   analysis/eMLR_assumption_testing.Rmd
    Modified:   analysis/eMLR_model_fitting.Rmd
    Modified:   code/mapping_functions.R
    Modified:   code/plotting_functions.R
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    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-03-08_n_67_cruise_494_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-04-28_n_60_cruise_559_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-05-25_n_894_cruise_683_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-05-31_n_251_cruise_168_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-06-11_n_1558_cruise_495_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-07-17_n_66_cruise_599_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-09-14_n_1839_cruise_266_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-09-21_n_503_cruise_666_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-09-30_n_178_cruise_496_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-10-25_n_69_cruise_600_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-12-09_n_2670_cruise_497_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2006-01-24_n_68_cruise_561_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2006-03-08_n_1719_cruise_306_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2006-04-25_n_38_cruise_562_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2006-06-04_n_589_cruise_25_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2006-06-16_n_1_cruise_602_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2006-06-21_n_968_cruise_498_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2006-07-11_n_37_cruise_603_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2006-10-26_n_68_cruise_604_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-01-23_n_85_cruise_564_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-02-28_n_1678_cruise_352_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-03-09_n_1058_cruise_501_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-04-11_n_1995_cruise_353_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-04-30_n_63_cruise_565_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-05-30_n_632_cruise_327_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-07-03_n_47_cruise_606_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-07-31_n_33_cruise_607_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-08-14_n_1212_cruise_502_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-09-16_n_486_cruise_667_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-09-18_n_299_cruise_503_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-10-30_n_1828_cruise_504_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-10-31_n_63_cruise_566_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-12-07_n_1654_cruise_505_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-01-08_n_608_cruise_74_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-01-16_n_3265_cruise_345_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-02-01_n_79_cruise_608_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-02-21_n_1666_cruise_354_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-03-02_n_996_cruise_385_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-03-15_n_936_cruise_19_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-04-06_n_846_cruise_75_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-04-28_n_57_cruise_568_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-05-28_n_426_cruise_171_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-06-22_n_880_cruise_394_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-10-21_n_363_cruise_506_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-01-07_n_345_cruise_674_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-02-16_n_673_cruise_675_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-02-27_n_1170_cruise_84_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-03-29_n_1074_cruise_676_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-04-17_n_3611_cruise_355_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-05-18_n_2666_cruise_507_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-05-23_n_317_cruise_172_.png
    Deleted:    output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-07-11_n_64_cruise_635_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-08-02_n_127_cruise_26_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-11-10_n_319_cruise_63_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-11-18_n_160_cruise_1059_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-01-01_n_4235_cruise_273_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-01-25_n_935_cruise_699_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-03-30_n_2343_cruise_346_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-04-02_n_387_cruise_703_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-05-21_n_273_cruise_173_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-05-26_n_168_cruise_1085_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-06-19_n_847_cruise_395_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-06-26_n_157_cruise_1063_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-07-25_n_1356_cruise_609_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-08-19_n_88_cruise_1064_.png
    Deleted:    output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-10-06_n_72_cruise_2028_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-11-15_n_87_cruise_2029_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-12-22_n_1308_cruise_20_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-01-17_n_108_cruise_1065_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-01-30_n_270_cruise_1087_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-02-18_n_121_cruise_1066_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-03-21_n_2158_cruise_295_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-05-18_n_527_cruise_174_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-06-25_n_250_cruise_1067_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-07-07_n_2466_cruise_517_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-10-08_n_896_cruise_347_.png
    Deleted:    output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-10-20_n_105_cruise_2031_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-01-28_n_253_cruise_1090_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-02-06_n_591_cruise_1002_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-02-19_n_242_cruise_1069_.png
    Deleted:    output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-04-01_n_826_cruise_329_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-04-15_n_111_cruise_2033_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-05-01_n_1404_cruise_330_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-06-07_n_152_cruise_1029_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-06-26_n_388_cruise_1092_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-07-05_n_718_cruise_1031_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-07-20_n_793_cruise_1071_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-08-14_n_1250_cruise_518_.png
    Deleted:    output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-11-25_n_77_cruise_1073_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-12-05_n_231_cruise_2071_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-12-12_n_118_cruise_1074_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-12-15_n_828_cruise_1050_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-01-23_n_902_cruise_1051_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-01-29_n_369_cruise_1093_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-02-19_n_221_cruise_1076_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-03-14_n_222_cruise_2072_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-05-02_n_2819_cruise_1035_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-05-06_n_298_cruise_2073_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-06-09_n_233_cruise_1078_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-07-24_n_678_cruise_1079_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-08-21_n_883_cruise_1096_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-09-02_n_2030_cruise_1041_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-10-11_n_140_cruise_2035_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-12-06_n_137_cruise_2074_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-01-11_n_1770_cruise_1042_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-01-24_n_288_cruise_2075_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-02-22_n_253_cruise_2038_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-03-13_n_187_cruise_2076_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-04-18_n_2219_cruise_1036_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-04-29_n_78_cruise_2039_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-05-05_n_288_cruise_2077_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-05-18_n_272_cruise_2040_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-06-16_n_195_cruise_2078_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-07-08_n_374_cruise_1098_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-07-25_n_403_cruise_2041_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-08-03_n_1705_cruise_1053_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-08-10_n_726_cruise_1099_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-11-24_n_82_cruise_2079_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-12-11_n_536_cruise_1004_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-01-19_n_65_cruise_2043_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-01-29_n_315_cruise_2080_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-02-14_n_234_cruise_2044_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-03-04_n_215_cruise_2081_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-03-25_n_17_cruise_1017_.png
    Deleted:    output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-04-19_n_185_cruise_1103_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-04-20_n_96_cruise_2045_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-05-02_n_230_cruise_2083_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-05-04_n_874_cruise_1043_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-05-12_n_368_cruise_1027_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-05-17_n_141_cruise_2046_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-05-17_n_689_cruise_1011_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-06-09_n_1589_cruise_1044_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-06-13_n_281_cruise_2084_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-07-20_n_445_cruise_2047_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-08-16_n_817_cruise_1100_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2015-11-20_n_106_cruise_2086_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-01-03_n_663_cruise_1054_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-01-16_n_78_cruise_2049_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-01-25_n_287_cruise_2087_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-02-15_n_381_cruise_2050_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-03-01_n_1359_cruise_1046_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-03-04_n_230_cruise_2088_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-04-13_n_106_cruise_2051_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-05-04_n_307_cruise_2090_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-05-16_n_146_cruise_2052_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-05-31_n_2080_cruise_1020_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-06-16_n_263_cruise_2091_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-06-24_n_104_cruise_2053_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-07-05_n_837_cruise_2011_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-07-21_n_1102_cruise_1101_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-08-13_n_290_cruise_2054_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-09-25_n_160_cruise_2055_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-11-20_n_103_cruise_2056_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2016-12-25_n_3975_cruise_1045_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2017-01-12_n_103_cruise_2093_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2017-01-30_n_368_cruise_2057_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2017-02-16_n_269_cruise_2094_.png
    Modified:   output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2017-02-19_n_428_cruise_1055_.png
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1 Predictor fields

Currently, we use combined predictor fields:

  • WOA18: S, T, and derived variables
  • GLODAP16: Oxygen, PO4, NO3, Silicate, and derived variables
predictors <- 
    read_csv(here::here("data/mapping",
                         "W18_st_G16_opsn.csv"))

2 Load MLR models

lm_all_wide_cstar <-
  read_csv(here::here("data/eMLR",
                       "lm_all_wide_cstar.csv"))

3 Merge MLRs + climatologies

lm_all_wide_cstar <- lm_all_wide_cstar %>% 
  mutate(model = str_remove(model, "cstar ~ "))
         
cstar <- full_join(predictors, lm_all_wide_cstar)

rm(predictors, lm_all_wide_cstar)

4 Map cstar

4.1 Apply MLRs to predictor

cstar <- b_cstar_model(cstar)

cstar <- cstar %>% 
  select(lon, lat, depth, era, basin, cstar, gamma)
cstar_average <- m_cstar_model_average(cstar)

rm(cstar)

cstar_average <- m_cut_gamma(cstar_average, "gamma")

4.2 Mean cstar sections

For each basin and era combination, the zonal mean cstar is calculated. Likewise, sd is calculated for the averaging of the mean basin fields.

cstar_average <- left_join(cstar_average,
                           basinmask %>% select(-basin))


cstar_average_zonal <- m_cstar_zonal_mean(cstar_average)

cstar_average_zonal <- m_cut_gamma(cstar_average_zonal, "gamma_mean")

5 Write csv

cstar_average %>%
    write_csv(here::here("data/output",
                         "cstar_3d.csv"))

cstar_average_zonal %>%
    write_csv(here::here("data/output",
                         "cstar_zonal.csv"))

sessionInfo()
R version 4.0.2 (2020-06-22)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18363)

Matrix products: default

locale:
[1] LC_COLLATE=English_Germany.1252  LC_CTYPE=English_Germany.1252   
[3] LC_MONETARY=English_Germany.1252 LC_NUMERIC=C                    
[5] LC_TIME=English_Germany.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] metR_0.7.0      scico_1.2.0     patchwork_1.0.1 collapse_1.3.2 
 [5] forcats_0.5.0   stringr_1.4.0   dplyr_1.0.0     purrr_0.3.4    
 [9] readr_1.3.1     tidyr_1.1.0     tibble_3.0.3    ggplot2_3.3.2  
[13] tidyverse_1.3.0 workflowr_1.6.2

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.5        lubridate_1.7.9   here_0.1          lattice_0.20-41  
 [5] zoo_1.8-8         assertthat_0.2.1  rprojroot_1.3-2   digest_0.6.25    
 [9] lfe_2.8-5.1       R6_2.4.1          cellranger_1.1.0  backports_1.1.8  
[13] reprex_0.3.0      evaluate_0.14     httr_1.4.2        pillar_1.4.6     
[17] rlang_0.4.7       readxl_1.3.1      data.table_1.13.0 rstudioapi_0.11  
[21] whisker_0.4       blob_1.2.1        Matrix_1.2-18     checkmate_2.0.0  
[25] rmarkdown_2.3     munsell_0.5.0     broom_0.7.0       compiler_4.0.2   
[29] httpuv_1.5.4      modelr_0.1.8      xfun_0.16         pkgconfig_2.0.3  
[33] htmltools_0.5.0   tidyselect_1.1.0  fansi_0.4.1       crayon_1.3.4     
[37] dbplyr_1.4.4      withr_2.2.0       later_1.1.0.1     grid_4.0.2       
[41] xtable_1.8-4      jsonlite_1.7.0    gtable_0.3.0      lifecycle_0.2.0  
[45] DBI_1.1.0         git2r_0.27.1      magrittr_1.5      scales_1.1.1     
[49] cli_2.0.2         stringi_1.4.6     fs_1.4.2          promises_1.1.1   
[53] xml2_1.3.2        ellipsis_0.3.1    generics_0.0.2    vctrs_0.3.2      
[57] sandwich_2.5-1    Formula_1.2-3     tools_4.0.2       glue_1.4.1       
[61] hms_0.5.3         parallel_4.0.2    yaml_2.2.1        colorspace_1.4-1 
[65] rvest_0.3.6       knitr_1.30        haven_2.3.1